Wall clock time and date at job start Tue Mar 31 2020 09:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47215 * 2 1 4 4 C 1.52998 * 109.46973 * 240.00445 * 2 1 3 5 5 C 1.52998 * 109.47372 * 65.00313 * 4 2 1 6 6 C 1.50701 * 109.46985 * 180.02562 * 5 4 2 7 7 C 1.38270 * 119.98635 * 269.95163 * 6 5 4 8 8 C 1.38222 * 120.05376 * 180.02562 * 7 6 5 9 9 C 1.38221 * 120.02457 * 0.04145 * 8 7 6 10 10 C 1.38434 * 119.97369 * 359.97438 * 9 8 7 11 11 F 1.35100 * 120.02693 * 180.02562 * 10 9 8 12 12 C 1.38178 * 119.99044 * 90.00078 * 6 5 4 13 13 C 1.50699 * 109.46993 * 120.00115 * 2 1 3 14 14 O 1.21296 * 119.99544 * 120.00132 * 13 2 1 15 15 N 1.34766 * 120.00414 * 300.00300 * 13 2 1 16 16 C 1.37098 * 120.00592 * 179.97438 * 15 13 2 17 17 H 1.07995 * 120.00501 * 222.94974 * 16 15 13 18 18 C 1.38949 * 119.99938 * 42.93781 * 16 15 13 19 19 N 1.31418 * 119.99617 * 18.92972 * 18 16 15 20 20 Si 1.86798 * 120.00449 * 198.92317 * 18 16 15 21 21 H 1.48503 * 109.46689 * 60.00563 * 20 18 16 22 22 H 1.48500 * 109.47241 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47063 * 300.00633 * 20 18 16 24 24 C 1.46505 * 119.99824 * 359.97438 * 15 13 2 25 25 C 1.52998 * 117.49784 * 187.63241 * 24 15 13 26 26 C 1.52995 * 117.49935 * 118.97125 * 24 15 13 27 27 H 1.09005 * 109.47023 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47149 * 299.99920 * 1 2 3 29 29 H 1.09004 * 109.46780 * 60.00056 * 1 2 3 30 30 H 1.08998 * 109.47064 * 304.99773 * 4 2 1 31 31 H 1.09001 * 109.47113 * 185.00148 * 4 2 1 32 32 H 1.08998 * 109.47466 * 59.99708 * 5 4 2 33 33 H 1.08995 * 109.46786 * 299.99269 * 5 4 2 34 34 H 1.08007 * 119.97191 * 0.02562 * 7 6 5 35 35 H 1.08001 * 119.98852 * 180.02562 * 8 7 6 36 36 H 1.07996 * 120.01321 * 180.02562 * 9 8 7 37 37 H 1.08001 * 120.01169 * 0.24659 * 12 6 5 38 38 H 0.97001 * 119.99673 * 174.91213 * 19 18 16 39 39 H 1.09001 * 115.54829 * 333.29652 * 24 15 13 40 40 H 1.09001 * 117.50350 * 359.97438 * 25 24 15 41 41 H 1.09001 * 117.50280 * 145.01899 * 25 24 15 42 42 H 1.08999 * 117.49866 * 214.97928 * 26 24 15 43 43 H 1.09005 * 117.50220 * 359.97382 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6353 0.0691 -2.4953 6 6 2.1371 -0.6416 -3.7258 7 6 3.3904 -0.3480 -4.2307 8 6 3.8519 -0.9987 -5.3595 9 6 3.0603 -1.9431 -5.9855 10 6 1.8052 -2.2377 -5.4812 11 9 1.0308 -3.1610 -6.0919 12 6 1.3442 -1.5857 -4.3498 13 6 2.0323 -0.7104 1.2304 14 8 2.7297 -1.6966 1.1191 15 7 1.7068 -0.2501 2.4545 16 6 2.1633 -0.8967 3.5739 17 1 1.5001 -1.0627 4.4099 18 6 3.4792 -1.3388 3.6328 19 7 4.3785 -0.8355 2.8172 20 14 3.9703 -2.6481 4.8712 21 1 3.1874 -3.8849 4.6206 22 1 5.4193 -2.9423 4.7323 23 1 3.6947 -2.1577 6.2456 24 6 0.8649 0.9413 2.5890 25 6 0.6772 1.5188 3.9933 26 6 -0.4760 0.7814 3.3081 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6054 -1.7197 -1.2952 31 1 3.1263 -0.7994 -1.2057 32 1 2.0699 1.0676 -2.4494 33 1 0.5491 0.1472 -2.5390 34 1 4.0094 0.3904 -3.7425 35 1 4.8311 -0.7688 -5.7527 36 1 3.4212 -2.4517 -6.8673 37 1 0.3634 -1.8114 -3.9581 38 1 5.3104 -1.0891 2.9068 39 1 0.9093 1.6446 1.7574 40 1 1.1796 1.0121 4.8173 41 1 0.5976 2.6020 4.0857 42 1 -1.3137 1.3797 2.9499 43 1 -0.7321 -0.2105 3.6808 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079732716.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:24 Heat of formation + Delta-G solvation = -46.820410 kcal Electronic energy + Delta-G solvation = -24859.908307 eV Core-core repulsion = 21205.724137 eV Total energy + Delta-G solvation = -3654.184170 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.90398 -40.76856 -40.05071 -37.87089 -36.43947 -34.65332 -33.34618 -32.46388 -31.47221 -29.30202 -27.04717 -25.99065 -23.79100 -23.54543 -23.06178 -22.50065 -21.84974 -20.45301 -18.52088 -17.96430 -17.73029 -17.36280 -17.08423 -16.71055 -16.58913 -16.21808 -15.82712 -15.39581 -15.22926 -14.71158 -14.62907 -14.48254 -14.15540 -13.82844 -13.68867 -13.46812 -13.07948 -12.95098 -12.78481 -12.74027 -12.65877 -12.34471 -12.30046 -12.19076 -12.12398 -11.98065 -11.69905 -11.47066 -11.32628 -11.14455 -10.67931 -9.90516 -9.78340 -9.59228 -8.90693 -8.18266 -5.94067 0.20050 0.27277 1.34049 1.42857 1.45803 2.28608 2.47355 2.62417 3.11755 3.17200 3.27481 3.42120 3.71563 3.84825 3.99782 4.07403 4.14895 4.19300 4.23884 4.30404 4.33804 4.42353 4.46564 4.57873 4.62204 4.71204 4.82720 4.93108 4.99589 5.01129 5.09820 5.13281 5.17347 5.17562 5.19514 5.33811 5.38325 5.48357 5.48945 5.52407 5.54758 5.65461 5.97648 6.22703 7.07856 7.27246 7.77721 8.45059 8.90372 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016690 B = 0.003564 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.224316 B = 7854.744024 C = 8746.105870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.092 0.908 4 C -0.076 4.076 5 C -0.072 4.072 6 C -0.056 4.056 7 C -0.136 4.136 8 C -0.089 4.089 9 C -0.165 4.165 10 C 0.076 3.924 11 F -0.151 7.151 12 C -0.163 4.163 13 C 0.468 3.532 14 O -0.592 6.592 15 N -0.445 5.445 16 C -0.358 4.358 17 H 0.074 0.926 18 C 0.023 3.977 19 N -0.870 5.870 20 Si 0.964 3.036 21 H -0.284 1.284 22 H -0.288 1.288 23 H -0.256 1.256 24 C 0.053 3.947 25 C -0.179 4.179 26 C -0.180 4.180 27 H 0.039 0.961 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.043 0.957 31 H 0.036 0.964 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.141 0.859 35 H 0.160 0.840 36 H 0.152 0.848 37 H 0.139 0.861 38 H 0.257 0.743 39 H 0.132 0.868 40 H 0.076 0.924 41 H 0.117 0.883 42 H 0.127 0.873 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.043 6.844 -13.638 16.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.110 0.890 4 C -0.114 4.114 5 C -0.109 4.109 6 C -0.056 4.056 7 C -0.154 4.154 8 C -0.106 4.106 9 C -0.184 4.184 10 C 0.057 3.943 11 F -0.129 7.129 12 C -0.182 4.182 13 C 0.258 3.742 14 O -0.473 6.473 15 N -0.165 5.165 16 C -0.486 4.486 17 H 0.092 0.908 18 C -0.183 4.183 19 N -0.505 5.505 20 Si 0.790 3.210 21 H -0.210 1.210 22 H -0.214 1.214 23 H -0.181 1.181 24 C -0.052 4.052 25 C -0.217 4.217 26 C -0.219 4.219 27 H 0.058 0.942 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.159 0.841 35 H 0.177 0.823 36 H 0.170 0.830 37 H 0.157 0.843 38 H 0.067 0.933 39 H 0.149 0.851 40 H 0.094 0.906 41 H 0.135 0.865 42 H 0.145 0.855 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.530 6.254 -13.796 16.495 hybrid contribution 0.634 -1.291 0.805 1.648 sum -5.896 4.963 -12.991 15.105 Atomic orbital electron populations 1.22012 0.91630 1.02084 1.04335 1.21150 0.98549 0.99831 0.92078 0.88988 1.21122 0.99692 0.98150 0.92480 1.20704 1.02641 0.98582 0.88968 1.19938 0.94278 0.95461 0.95967 1.21486 0.95610 1.01344 0.96953 1.21345 1.00390 0.94282 0.94617 1.21398 0.92994 1.01091 1.02868 1.17965 0.91010 0.91010 0.94357 1.91461 1.74854 1.64159 1.82467 1.21209 1.02336 0.98691 0.95935 1.20908 0.82571 0.85503 0.85263 1.90475 1.40354 1.29997 1.86513 1.43008 1.45770 1.23203 1.04480 1.19035 0.94589 1.37752 0.97206 0.90818 1.25962 0.95880 0.98490 0.97967 1.69930 1.01193 1.41426 1.37952 0.85459 0.76675 0.79599 0.79267 1.21039 1.21355 1.18057 1.22020 0.94960 0.91127 0.97074 1.23181 1.02274 1.00254 0.95982 1.23341 0.92455 1.01412 1.04667 0.94216 0.90437 0.88861 0.93834 0.94469 0.88944 0.88543 0.84141 0.82285 0.83047 0.84302 0.93343 0.85082 0.90564 0.86467 0.85473 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 8.57 71.98 0.62 -3.36 16 2 C -0.09 -3.38 1.94 -11.54 -0.02 -3.40 16 3 H 0.09 3.01 7.57 -2.39 -0.02 2.99 16 4 C -0.08 -2.60 4.01 30.59 0.12 -2.48 16 5 C -0.07 -1.68 5.10 29.85 0.15 -1.53 16 6 C -0.06 -1.36 5.13 -19.87 -0.10 -1.47 16 7 C -0.14 -3.00 9.70 22.27 0.22 -2.79 16 8 C -0.09 -1.70 10.04 22.26 0.22 -1.48 16 9 C -0.16 -3.42 10.03 22.31 0.22 -3.19 16 10 C 0.08 1.87 7.30 22.37 0.16 2.03 16 11 F -0.15 -3.92 17.27 44.97 0.78 -3.14 16 12 C -0.16 -4.04 9.68 22.31 0.22 -3.82 16 13 C 0.47 23.71 6.37 87.66 0.56 24.27 16 14 O -0.59 -36.26 13.57 -3.08 -0.04 -36.30 16 15 N -0.44 -22.05 2.85 -613.15 -1.75 -23.80 16 16 C -0.36 -19.96 7.83 84.04 0.66 -19.30 16 17 H 0.07 3.99 7.40 -2.91 -0.02 3.97 16 18 C 0.02 1.34 4.36 84.93 0.37 1.71 16 19 N -0.87 -53.53 11.66 21.66 0.25 -53.28 16 20 Si 0.96 46.68 29.60 68.60 2.03 48.71 16 21 H -0.28 -14.03 7.11 99.48 0.71 -13.33 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 23 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 24 C 0.05 1.96 4.30 44.99 0.19 2.16 16 25 C -0.18 -6.00 9.81 30.62 0.30 -5.70 16 26 C -0.18 -5.46 9.39 30.62 0.29 -5.18 16 27 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.08 2.07 4.37 -2.39 -0.01 2.06 16 29 H 0.09 1.83 6.57 -2.38 -0.02 1.81 16 30 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.04 1.50 7.95 -2.39 -0.02 1.48 16 32 H 0.09 1.86 8.09 -2.39 -0.02 1.84 16 33 H 0.10 1.86 6.51 -2.39 -0.02 1.84 16 34 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 35 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 36 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 37 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 38 H 0.26 15.36 8.32 -92.71 -0.77 14.59 16 39 H 0.13 4.09 6.24 -2.39 -0.01 4.07 16 40 H 0.08 3.03 6.83 -2.39 -0.02 3.02 16 41 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 42 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 43 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 Total: -1.00 -75.81 352.62 6.46 -69.35 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 1.01 Total: 21.98 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 4.18 Total: -23.52 kcal Atomic # 7 Polarization: -75.58 SS G_CDS: -1.50 Total: -77.08 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -0.04 Total: -36.30 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.78 Total: -3.14 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -75.81 6.46 -69.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079732716.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.532 kcal (2) G-P(sol) polarization free energy of solvation -75.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds