Wall clock time and date at job start Tue Mar 31 2020 08:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47269 * 2 1 4 4 C 1.53000 * 109.47029 * 179.97438 * 3 2 1 5 5 H 1.08994 * 115.55028 * 29.33346 * 4 3 2 6 6 C 1.53000 * 117.49908 * 243.62079 * 4 3 2 7 7 C 1.52995 * 60.00422 * 252.51622 * 6 4 3 8 8 H 1.08998 * 117.49682 * 107.48955 * 7 6 4 9 9 C 1.50696 * 117.51929 * 252.52417 * 7 6 4 10 10 O 1.21284 * 120.00421 * 68.62599 * 9 7 6 11 11 N 1.34786 * 119.99803 * 248.62629 * 9 7 6 12 12 C 1.46500 * 119.99684 * 354.33548 * 11 9 7 13 13 C 1.50704 * 109.47022 * 90.00088 * 12 11 9 14 14 H 1.07996 * 119.99960 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99456 * 179.97438 * 13 12 11 16 16 N 1.31506 * 120.00497 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99576 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47216 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47256 * 119.99933 * 17 15 13 20 20 H 1.48505 * 109.46734 * 240.00016 * 17 15 13 21 21 C 1.40029 * 119.99709 * 174.33345 * 11 9 7 22 22 C 1.38847 * 120.04799 * 302.82200 * 21 11 9 23 23 C 1.38112 * 119.95778 * 179.76940 * 22 21 11 24 24 C 1.38476 * 120.04025 * 0.51159 * 23 22 21 25 25 F 1.35099 * 119.95381 * 179.71840 * 24 23 22 26 26 C 1.38472 * 120.09373 * 359.74396 * 24 23 22 27 27 C 1.38114 * 120.04325 * 359.97438 * 26 24 23 28 28 H 1.09002 * 109.47015 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47035 * 299.99511 * 1 2 3 30 30 H 1.09004 * 109.47087 * 59.99868 * 1 2 3 31 31 H 1.09006 * 109.47042 * 240.00480 * 2 1 3 32 32 H 1.09001 * 109.47339 * 120.00589 * 2 1 3 33 33 H 1.09006 * 109.46697 * 60.00268 * 3 2 1 34 34 H 1.08991 * 109.47352 * 300.00379 * 3 2 1 35 35 H 1.08998 * 117.49744 * 0.02562 * 6 4 3 36 36 H 1.09001 * 117.49408 * 145.02256 * 6 4 3 37 37 H 1.09005 * 109.46397 * 209.99756 * 12 11 9 38 38 H 1.09000 * 109.47254 * 329.99528 * 12 11 9 39 39 H 0.97004 * 120.00625 * 180.02562 * 16 15 13 40 40 H 1.08003 * 120.01949 * 0.02562 * 22 21 11 41 41 H 1.07998 * 119.97806 * 180.22823 * 23 22 21 42 42 H 1.07997 * 119.98005 * 179.97438 * 26 24 23 43 43 H 1.08003 * 120.02430 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0403 0.5851 -0.4808 6 6 4.2760 2.0456 1.2167 7 6 4.2765 2.7945 -0.1175 8 1 3.6513 3.6839 -0.1955 9 6 5.5693 2.8388 -0.8906 10 8 6.0118 1.8264 -1.3908 11 7 6.2338 4.0036 -1.0262 12 6 5.6400 5.2477 -0.5304 13 6 6.0564 5.4674 0.9012 14 1 6.6987 4.7518 1.3927 15 6 5.6172 6.5822 1.5834 16 7 4.8354 7.4539 0.9848 17 14 6.1339 6.8550 3.3577 18 1 7.0087 5.7380 3.7958 19 1 6.8755 8.1369 3.4658 20 1 4.9274 6.9067 4.2221 21 6 7.4918 4.0244 -1.6409 22 6 8.5240 3.2433 -1.1387 23 6 9.7627 3.2617 -1.7494 24 6 9.9784 4.0665 -2.8554 25 9 11.1924 4.0874 -3.4479 26 6 8.9519 4.8502 -3.3547 27 6 7.7101 4.8303 -2.7504 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6767 1.9564 -0.8899 35 1 3.6504 2.4421 2.0164 36 1 5.2109 1.5848 1.5356 37 1 5.9835 6.0827 -1.1411 38 1 4.5536 5.1793 -0.5865 39 1 4.5267 8.2384 1.4646 40 1 8.3573 2.6186 -0.2736 41 1 10.5648 2.6514 -1.3612 42 1 9.1223 5.4775 -4.2171 43 1 6.9097 5.4421 -3.1398 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080159135.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:53 Heat of formation + Delta-G solvation = -45.654999 kcal Electronic energy + Delta-G solvation = -24724.615099 eV Core-core repulsion = 21070.481465 eV Total energy + Delta-G solvation = -3654.133634 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.60986 -40.12453 -38.38630 -36.69980 -35.04344 -33.72522 -32.66796 -30.86295 -29.41971 -27.44572 -27.03611 -24.18371 -23.41193 -22.43487 -21.91172 -21.43433 -20.24098 -18.57692 -17.43628 -16.89797 -16.76164 -16.19063 -15.84135 -15.30082 -15.13616 -14.64885 -14.53166 -14.13895 -13.95112 -13.83926 -13.27304 -13.15567 -12.88359 -12.66719 -12.50665 -12.33343 -12.02793 -11.91634 -11.83578 -11.48432 -11.21850 -11.10912 -10.90787 -10.85641 -10.80010 -10.72274 -10.26885 -9.92793 -9.84413 -9.63070 -9.27241 -8.80034 -8.74825 -8.62335 -7.57030 -6.25110 -4.31750 1.44065 1.55690 3.03341 3.17781 3.26931 3.30571 3.56109 3.93072 4.27029 4.29609 4.55886 4.77144 5.02909 5.06466 5.07979 5.09334 5.11289 5.28180 5.30542 5.37984 5.55989 5.61756 5.66541 5.69845 5.79367 5.86710 5.88411 5.97101 6.04052 6.14192 6.17688 6.28205 6.31976 6.39710 6.41069 6.46803 6.60539 6.69009 6.73657 7.04571 7.09556 7.51141 7.69342 7.94559 8.06437 8.69073 8.83652 9.35512 10.82059 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.009044 B = 0.005116 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3095.273698 B = 5472.133363 C = 7814.168350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.089 4.089 4 C -0.132 4.132 5 H 0.112 0.888 6 C -0.136 4.136 7 C -0.166 4.166 8 H 0.130 0.870 9 C 0.551 3.449 10 O -0.557 6.557 11 N -0.555 5.555 12 C 0.238 3.762 13 C -0.532 4.532 14 H 0.062 0.938 15 C 0.067 3.933 16 N -0.892 5.892 17 Si 0.896 3.104 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.172 3.828 22 C -0.085 4.085 23 C -0.141 4.141 24 C 0.073 3.927 25 F -0.148 7.148 26 C -0.140 4.140 27 C -0.102 4.102 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.040 0.960 38 H 0.045 0.955 39 H 0.265 0.735 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.730 -8.402 -3.280 9.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.126 4.126 4 C -0.150 4.150 5 H 0.130 0.870 6 C -0.174 4.174 7 C -0.187 4.187 8 H 0.148 0.852 9 C 0.341 3.659 10 O -0.437 6.437 11 N -0.280 5.280 12 C 0.120 3.880 13 C -0.570 4.570 14 H 0.080 0.920 15 C -0.136 4.136 16 N -0.530 5.530 17 Si 0.723 3.277 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C 0.080 3.920 22 C -0.105 4.105 23 C -0.160 4.160 24 C 0.054 3.946 25 F -0.126 7.126 26 C -0.159 4.159 27 C -0.122 4.122 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.610 -8.727 -3.510 9.544 hybrid contribution 0.520 0.644 1.009 1.305 sum -1.091 -8.083 -2.501 8.531 Atomic orbital electron populations 1.21783 0.96152 1.01276 1.01798 1.21496 0.95361 0.96908 1.02076 1.21213 0.92401 0.96779 1.02230 1.22449 0.94332 0.96104 1.02162 0.87007 1.22936 1.02377 1.01467 0.90580 1.22168 0.97195 0.97883 1.01426 0.85242 1.19715 0.85054 0.82169 0.78958 1.90626 1.69680 1.34186 1.49172 1.45971 1.15686 1.10532 1.55824 1.19649 0.94355 0.79024 0.95007 1.21413 1.31261 1.07768 0.96575 0.91968 1.24893 0.94718 0.95479 0.98531 1.69915 1.33876 1.12018 1.37200 0.86462 0.78544 0.78330 0.84321 1.19616 1.20826 1.20773 1.17672 0.86034 0.96473 0.91862 1.20983 0.90942 0.99326 0.99235 1.20896 0.98299 1.00690 0.96127 1.17596 0.80910 1.00842 0.95300 1.91448 1.42233 1.95712 1.83248 1.20872 0.92428 1.00820 1.01823 1.20998 0.97043 1.00046 0.94144 0.93035 0.92783 0.92801 0.92024 0.91957 0.91596 0.91591 0.88002 0.88916 0.94211 0.93724 0.92496 0.85337 0.84991 0.84847 0.84793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.12 -1.27 5.89 -26.73 -0.16 -1.43 16 3 C -0.09 -1.09 5.50 -26.73 -0.15 -1.23 16 4 C -0.13 -1.95 5.25 -90.62 -0.48 -2.43 16 5 H 0.11 1.75 7.60 -51.93 -0.39 1.36 16 6 C -0.14 -2.15 9.88 -26.73 -0.26 -2.41 16 7 C -0.17 -2.95 5.07 -91.77 -0.47 -3.41 16 8 H 0.13 2.36 6.41 -51.93 -0.33 2.03 16 9 C 0.55 11.22 7.24 -10.98 -0.08 11.14 16 10 O -0.56 -12.21 15.66 5.55 0.09 -12.12 16 11 N -0.55 -11.57 2.56 -114.71 -0.29 -11.86 16 12 C 0.24 5.44 4.84 -5.19 -0.03 5.42 16 13 C -0.53 -13.35 9.38 -34.44 -0.32 -13.67 16 14 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 15 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -23.81 13.29 55.43 0.74 -23.08 16 17 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 C 0.17 3.39 5.15 -83.66 -0.43 2.96 16 22 C -0.08 -1.56 8.98 -39.40 -0.35 -1.92 16 23 C -0.14 -2.27 10.02 -39.54 -0.40 -2.66 16 24 C 0.07 1.17 7.30 -39.41 -0.29 0.88 16 25 F -0.15 -2.28 17.26 2.25 0.04 -2.24 16 26 C -0.14 -2.18 10.02 -39.54 -0.40 -2.57 16 27 C -0.10 -1.78 9.32 -39.40 -0.37 -2.15 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.78 7.87 -51.93 -0.41 0.38 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 1.48 8.03 -51.93 -0.42 1.07 16 36 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 37 H 0.04 0.96 7.36 -51.93 -0.38 0.57 16 38 H 0.04 1.04 6.11 -51.93 -0.32 0.72 16 39 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 40 H 0.13 2.37 8.06 -52.48 -0.42 1.95 16 41 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 42 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 43 H 0.13 2.18 7.83 -52.48 -0.41 1.77 16 LS Contribution 367.32 15.07 5.54 5.54 Total: -1.00 -27.73 367.32 -9.25 -36.99 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -6.44 Total: 4.57 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -3.90 Total: -12.90 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.44 Total: -34.94 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.73 -9.25 -36.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080159135.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.669 kcal (2) G-P(sol) polarization free energy of solvation -27.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds