Wall clock time and date at job start Tue Mar 31 2020 08:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47269 * 2 1 4 4 C 1.53000 * 109.47029 * 179.97438 * 3 2 1 5 5 H 1.08994 * 115.55028 * 29.33346 * 4 3 2 6 6 C 1.53000 * 117.49908 * 243.62079 * 4 3 2 7 7 C 1.52995 * 60.00422 * 252.51622 * 6 4 3 8 8 H 1.08998 * 117.49682 * 107.48955 * 7 6 4 9 9 C 1.50696 * 117.51929 * 252.52417 * 7 6 4 10 10 O 1.21284 * 120.00421 * 68.62599 * 9 7 6 11 11 N 1.34786 * 119.99803 * 248.62629 * 9 7 6 12 12 C 1.46500 * 119.99684 * 354.33548 * 11 9 7 13 13 C 1.50704 * 109.47022 * 90.00088 * 12 11 9 14 14 H 1.07996 * 119.99960 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99456 * 179.97438 * 13 12 11 16 16 N 1.31506 * 120.00497 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99576 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47216 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47256 * 119.99933 * 17 15 13 20 20 H 1.48505 * 109.46734 * 240.00016 * 17 15 13 21 21 C 1.40029 * 119.99709 * 174.33345 * 11 9 7 22 22 C 1.38847 * 120.04799 * 302.82200 * 21 11 9 23 23 C 1.38112 * 119.95778 * 179.76940 * 22 21 11 24 24 C 1.38476 * 120.04025 * 0.51159 * 23 22 21 25 25 F 1.35099 * 119.95381 * 179.71840 * 24 23 22 26 26 C 1.38472 * 120.09373 * 359.74396 * 24 23 22 27 27 C 1.38114 * 120.04325 * 359.97438 * 26 24 23 28 28 H 1.09002 * 109.47015 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47035 * 299.99511 * 1 2 3 30 30 H 1.09004 * 109.47087 * 59.99868 * 1 2 3 31 31 H 1.09006 * 109.47042 * 240.00480 * 2 1 3 32 32 H 1.09001 * 109.47339 * 120.00589 * 2 1 3 33 33 H 1.09006 * 109.46697 * 60.00268 * 3 2 1 34 34 H 1.08991 * 109.47352 * 300.00379 * 3 2 1 35 35 H 1.08998 * 117.49744 * 0.02562 * 6 4 3 36 36 H 1.09001 * 117.49408 * 145.02256 * 6 4 3 37 37 H 1.09005 * 109.46397 * 209.99756 * 12 11 9 38 38 H 1.09000 * 109.47254 * 329.99528 * 12 11 9 39 39 H 0.97004 * 120.00625 * 180.02562 * 16 15 13 40 40 H 1.08003 * 120.01949 * 0.02562 * 22 21 11 41 41 H 1.07998 * 119.97806 * 180.22823 * 23 22 21 42 42 H 1.07997 * 119.98005 * 179.97438 * 26 24 23 43 43 H 1.08003 * 120.02430 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0403 0.5851 -0.4808 6 6 4.2760 2.0456 1.2167 7 6 4.2765 2.7945 -0.1175 8 1 3.6513 3.6839 -0.1955 9 6 5.5693 2.8388 -0.8906 10 8 6.0118 1.8264 -1.3908 11 7 6.2338 4.0036 -1.0262 12 6 5.6400 5.2477 -0.5304 13 6 6.0564 5.4674 0.9012 14 1 6.6987 4.7518 1.3927 15 6 5.6172 6.5822 1.5834 16 7 4.8354 7.4539 0.9848 17 14 6.1339 6.8550 3.3577 18 1 7.0087 5.7380 3.7958 19 1 6.8755 8.1369 3.4658 20 1 4.9274 6.9067 4.2221 21 6 7.4918 4.0244 -1.6409 22 6 8.5240 3.2433 -1.1387 23 6 9.7627 3.2617 -1.7494 24 6 9.9784 4.0665 -2.8554 25 9 11.1924 4.0874 -3.4479 26 6 8.9519 4.8502 -3.3547 27 6 7.7101 4.8303 -2.7504 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6767 1.9564 -0.8899 35 1 3.6504 2.4421 2.0164 36 1 5.2109 1.5848 1.5356 37 1 5.9835 6.0827 -1.1411 38 1 4.5536 5.1793 -0.5865 39 1 4.5267 8.2384 1.4646 40 1 8.3573 2.6186 -0.2736 41 1 10.5648 2.6514 -1.3612 42 1 9.1223 5.4775 -4.2171 43 1 6.9097 5.4421 -3.1398 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080159135.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:52 Heat of formation + Delta-G solvation = -56.437153 kcal Electronic energy + Delta-G solvation = -24725.082648 eV Core-core repulsion = 21070.481465 eV Total energy + Delta-G solvation = -3654.601183 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.87836 -41.64406 -39.74212 -38.00526 -36.71759 -34.70710 -34.55809 -32.19747 -30.90017 -29.01024 -28.26497 -25.61697 -25.13557 -23.89536 -23.07346 -22.56628 -21.40454 -20.06599 -18.81710 -18.64443 -18.32302 -17.81400 -17.28001 -16.56431 -16.45562 -16.07282 -15.84217 -15.58425 -15.29250 -15.20075 -14.57886 -14.37413 -14.22174 -14.11598 -13.85472 -13.68561 -13.50976 -13.24719 -13.09718 -12.97433 -12.82967 -12.61947 -12.19498 -12.16877 -12.08543 -11.91440 -11.75858 -11.62672 -11.12237 -10.94552 -10.79139 -10.58431 -10.29546 -10.12724 -9.11236 -8.21146 -6.34418 0.05826 0.22376 1.39401 1.42822 1.49173 1.54235 2.04254 2.40394 2.56666 2.94541 3.10090 3.24179 3.53932 3.75164 3.84883 3.88046 3.94116 4.17857 4.21365 4.23746 4.32412 4.36742 4.43134 4.44296 4.66351 4.86048 4.87394 4.88629 4.92908 4.97278 5.03106 5.06652 5.09076 5.12005 5.15324 5.22859 5.37986 5.40073 5.44326 5.55281 5.61385 5.70526 5.99146 6.01881 6.39534 6.75063 7.19276 7.36983 8.84834 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.009044 B = 0.005116 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3095.273698 B = 5472.133363 C = 7814.168350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.086 4.086 4 C -0.107 4.107 5 H 0.104 0.896 6 C -0.132 4.132 7 C -0.190 4.190 8 H 0.122 0.878 9 C 0.546 3.454 10 O -0.578 6.578 11 N -0.557 5.557 12 C 0.254 3.746 13 C -0.536 4.536 14 H 0.051 0.949 15 C 0.026 3.974 16 N -0.919 5.919 17 Si 0.952 3.048 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.274 1.274 21 C 0.136 3.864 22 C -0.100 4.100 23 C -0.135 4.135 24 C 0.075 3.925 25 F -0.140 7.140 26 C -0.130 4.130 27 C -0.111 4.111 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.025 0.975 38 H 0.038 0.962 39 H 0.268 0.732 40 H 0.119 0.881 41 H 0.159 0.841 42 H 0.166 0.834 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.533 -8.816 -3.014 9.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.123 4.123 4 C -0.126 4.126 5 H 0.122 0.878 6 C -0.169 4.169 7 C -0.211 4.211 8 H 0.139 0.861 9 C 0.338 3.662 10 O -0.459 6.459 11 N -0.282 5.282 12 C 0.135 3.865 13 C -0.574 4.574 14 H 0.069 0.931 15 C -0.174 4.174 16 N -0.558 5.558 17 Si 0.778 3.222 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.200 1.200 21 C 0.044 3.956 22 C -0.120 4.120 23 C -0.154 4.154 24 C 0.055 3.945 25 F -0.119 7.119 26 C -0.149 4.149 27 C -0.131 4.131 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.134 0.866 36 H 0.106 0.894 37 H 0.043 0.957 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.137 0.863 41 H 0.176 0.824 42 H 0.183 0.817 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.404 -9.146 -3.251 9.808 hybrid contribution 0.543 0.760 0.851 1.264 sum -0.861 -8.386 -2.400 8.765 Atomic orbital electron populations 1.21765 0.94892 1.02142 1.02010 1.21475 0.96429 0.95446 1.02238 1.21246 0.90248 0.98284 1.02558 1.22493 0.95823 0.93792 1.00469 0.87809 1.23029 1.02610 1.00820 0.90492 1.22160 0.96573 0.99279 1.03093 0.86058 1.20137 0.85632 0.81733 0.78732 1.90592 1.70510 1.34612 1.50210 1.45891 1.16323 1.09930 1.56034 1.19288 0.93883 0.79509 0.93867 1.21533 1.30853 1.07517 0.97525 0.93101 1.25539 0.94727 0.95267 1.01867 1.69993 1.34781 1.12484 1.38583 0.85584 0.78317 0.77957 0.80324 1.19616 1.20725 1.19970 1.18067 0.85923 0.98318 0.93278 1.20995 0.91765 0.99661 0.99596 1.21122 0.97976 1.00519 0.95772 1.17673 0.81201 1.00521 0.95089 1.91471 1.41768 1.95625 1.83049 1.21168 0.91275 1.00349 1.02094 1.21141 0.98199 0.99879 0.93881 0.91875 0.92447 0.92744 0.92184 0.91538 0.90938 0.91595 0.86567 0.89445 0.95673 0.94385 0.92279 0.86260 0.82365 0.81689 0.84260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.91 71.98 0.71 -1.75 16 2 C -0.12 -2.30 5.89 30.59 0.18 -2.12 16 3 C -0.09 -2.01 5.50 30.60 0.17 -1.84 16 4 C -0.11 -3.14 5.25 -10.79 -0.06 -3.20 16 5 H 0.10 3.25 7.60 -2.39 -0.02 3.23 16 6 C -0.13 -4.14 9.88 30.59 0.30 -3.84 16 7 C -0.19 -6.90 5.07 -11.54 -0.06 -6.96 16 8 H 0.12 4.57 6.41 -2.39 -0.02 4.56 16 9 C 0.55 22.92 7.24 87.65 0.63 23.55 16 10 O -0.58 -25.98 15.66 -3.04 -0.05 -26.02 16 11 N -0.56 -23.94 2.56 -635.23 -1.63 -25.57 16 12 C 0.25 11.96 4.84 85.63 0.41 12.38 16 13 C -0.54 -27.31 9.38 25.60 0.24 -27.07 16 14 H 0.05 2.67 7.81 -2.91 -0.02 2.64 16 15 C 0.03 1.36 5.46 84.66 0.46 1.82 16 16 N -0.92 -49.31 13.29 21.45 0.28 -49.03 16 17 Si 0.95 41.08 29.54 68.60 2.03 43.10 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 C 0.14 5.44 5.15 38.12 0.20 5.64 16 22 C -0.10 -3.72 8.98 22.39 0.20 -3.52 16 23 C -0.13 -4.17 10.02 22.30 0.22 -3.95 16 24 C 0.07 2.24 7.30 22.38 0.16 2.41 16 25 F -0.14 -3.97 17.26 44.97 0.78 -3.19 16 26 C -0.13 -3.81 10.02 22.30 0.22 -3.58 16 27 C -0.11 -3.86 9.32 22.39 0.21 -3.65 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.62 7.87 -2.38 -0.02 1.60 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.12 3.28 8.03 -2.39 -0.02 3.26 16 36 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.03 1.25 7.36 -2.38 -0.02 1.23 16 38 H 0.04 1.84 6.11 -2.39 -0.01 1.82 16 39 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 40 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 41 H 0.16 3.95 8.06 -2.91 -0.02 3.93 16 42 H 0.17 3.72 8.06 -2.91 -0.02 3.70 16 43 H 0.14 4.56 7.83 -2.91 -0.02 4.54 16 Total: -1.00 -58.78 367.32 6.62 -52.15 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 0.99 Total: 24.24 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: 4.22 Total: -15.68 kcal Atomic # 7 Polarization: -73.25 SS G_CDS: -1.34 Total: -74.59 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.05 Total: -26.02 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.78 Total: -3.19 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.10 kcal Total: -58.78 6.62 -52.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080159135.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.283 kcal (2) G-P(sol) polarization free energy of solvation -58.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds