Wall clock time and date at job start Tue Mar 31 2020 09:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.29946 * 126.28244 * 300.02057 * 4 2 1 6 6 O 1.21300 * 110.24632 * 179.97438 * 5 4 2 7 7 C 1.33639 * 109.81676 * 0.02562 * 6 5 4 8 8 C 1.50697 * 126.55504 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.47456 * 164.97884 * 8 7 6 10 10 C 1.53000 * 109.47290 * 284.97842 * 8 7 6 11 11 N 1.46502 * 109.47074 * 44.97635 * 8 7 6 12 12 C 1.39987 * 120.00022 * 154.99915 * 11 8 7 13 13 C 1.40432 * 125.97315 * 0.02562 * 12 11 8 14 14 C 1.35255 * 107.86022 * 179.97438 * 13 12 11 15 15 N 1.34963 * 107.86374 * 359.97438 * 14 13 12 16 16 C 1.46493 * 125.97163 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47080 * 125.00259 * 16 15 14 18 18 H 1.07997 * 120.00155 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99953 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00124 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99878 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46909 * 90.00395 * 21 19 17 23 23 H 1.48493 * 109.47152 * 210.00191 * 21 19 17 24 24 H 1.48494 * 109.47267 * 330.00535 * 21 19 17 25 25 N 1.31217 * 125.97893 * 179.69183 * 12 11 8 26 26 N 1.31140 * 106.89440 * 359.76839 * 7 6 5 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 34 34 H 1.09001 * 109.46837 * 59.99663 * 10 8 7 35 35 H 1.08995 * 109.47326 * 179.97438 * 10 8 7 36 36 H 1.09004 * 109.46949 * 300.00282 * 10 8 7 37 37 H 0.96997 * 119.99976 * 335.00174 * 11 8 7 38 38 H 1.07998 * 126.07482 * 0.02562 * 13 12 11 39 39 H 1.08001 * 126.06422 * 180.02562 * 14 13 12 40 40 H 1.09002 * 109.47263 * 244.99969 * 16 15 14 41 41 H 1.08995 * 109.47339 * 4.99852 * 16 15 14 42 42 H 0.96999 * 120.00545 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7946 -0.3750 2.4631 6 8 2.3409 -1.1482 3.2215 7 6 2.9994 -2.0783 2.5235 8 6 3.8066 -3.2192 3.0870 9 1 3.9985 -3.9510 2.3022 10 6 5.1366 -2.6867 3.6239 11 7 3.0600 -3.8549 4.1754 12 6 3.3079 -5.1922 4.5066 13 6 4.2394 -6.0376 3.8824 14 6 4.1770 -7.2443 4.4901 15 7 3.2439 -7.1704 5.4624 16 6 2.8560 -8.2553 6.3670 17 6 2.9994 -7.7945 7.7946 18 1 3.3453 -6.7937 8.0069 19 6 2.6889 -8.6506 8.8299 20 7 2.2682 -9.8695 8.5716 21 14 2.8674 -8.0796 10.5995 22 1 1.5925 -7.4676 11.0531 23 1 3.1936 -9.2419 11.4642 24 1 3.9576 -7.0753 10.6881 25 7 2.7150 -5.8733 5.4587 26 7 2.8052 -1.8109 1.2544 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 4.9447 -1.9550 4.4087 35 1 5.7203 -3.5119 4.0319 36 1 5.6921 -2.2137 2.8141 37 1 2.3938 -3.3491 4.6666 38 1 4.8908 -5.7713 3.0631 39 1 4.7693 -8.1126 4.2418 40 1 1.8192 -8.5334 6.1774 41 1 3.5003 -9.1179 6.1972 42 1 2.0502 -10.4720 9.2999 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086154380.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:14:19 Heat of formation + Delta-G solvation = 141.160499 kcal Electronic energy + Delta-G solvation = -24008.858048 eV Core-core repulsion = 20415.038055 eV Total energy + Delta-G solvation = -3593.819993 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.80289 -40.30393 -37.16446 -37.04554 -34.69821 -33.54913 -32.22926 -30.95037 -29.89075 -28.84428 -27.62759 -26.54626 -25.05258 -24.75890 -22.98778 -22.68315 -20.68662 -20.02492 -19.38612 -18.25302 -17.77284 -16.81150 -16.55813 -15.92486 -15.40911 -14.99491 -14.75740 -14.41624 -14.34310 -13.98892 -13.83046 -13.54709 -12.88545 -12.73967 -12.66703 -12.38958 -12.29803 -12.27985 -12.05641 -11.96315 -11.73331 -11.65596 -11.51624 -11.43701 -11.13326 -10.97137 -10.84784 -10.24013 -10.19769 -10.05811 -9.69259 -9.35396 -8.60622 -8.00190 -7.18035 -6.21826 -4.26611 0.90191 1.97618 2.53364 2.84284 2.90335 3.25687 3.31495 3.36109 3.41265 3.65315 3.79395 4.11862 4.35615 4.42340 4.60954 4.61940 4.83998 4.93298 5.02567 5.13199 5.18731 5.31554 5.36833 5.37674 5.43141 5.51266 5.57045 5.61605 5.70424 5.76672 5.87754 5.90838 6.03342 6.18677 6.40855 6.72006 6.97491 7.12819 7.46560 7.72492 7.87355 7.94360 8.05190 8.09292 8.74609 8.86620 9.38929 10.86673 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.025622 B = 0.002496 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.545949 B =11214.041464 C =11465.895145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.004 4.004 3 C -0.145 4.145 4 C 0.174 3.826 5 N -0.379 5.379 6 O 0.083 5.917 7 C 0.184 3.816 8 C 0.270 3.730 9 H 0.122 0.878 10 C -0.169 4.169 11 N -0.724 5.724 12 C 0.306 3.694 13 C -0.333 4.333 14 C 0.070 3.930 15 N -0.325 5.325 16 C 0.259 3.741 17 C -0.526 4.526 18 H 0.069 0.931 19 C 0.061 3.939 20 N -0.896 5.896 21 Si 0.907 3.093 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.272 1.272 25 N -0.325 5.325 26 N -0.474 5.474 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.404 0.596 38 H 0.133 0.867 39 H 0.165 0.835 40 H 0.043 0.957 41 H 0.055 0.945 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.044 17.090 -17.300 24.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.024 4.024 3 C -0.203 4.203 4 C -0.099 4.099 5 N -0.085 5.085 6 O 0.024 5.976 7 C -0.038 4.038 8 C 0.161 3.839 9 H 0.139 0.861 10 C -0.229 4.229 11 N -0.368 5.368 12 C 0.050 3.950 13 C -0.366 4.366 14 C -0.082 4.082 15 N -0.104 5.104 16 C 0.141 3.859 17 C -0.564 4.564 18 H 0.087 0.913 19 C -0.142 4.142 20 N -0.535 5.535 21 Si 0.735 3.265 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 N -0.156 5.156 26 N -0.207 5.207 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.120 0.880 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.239 0.761 38 H 0.151 0.849 39 H 0.182 0.818 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.727 17.394 -16.507 24.042 hybrid contribution 0.497 0.157 0.633 0.820 sum 2.225 17.551 -15.874 23.769 Atomic orbital electron populations 1.21859 0.92793 1.02763 1.03004 1.19568 0.96490 0.95356 0.90947 1.21850 1.01465 0.93969 1.03015 1.25864 0.96667 0.92719 0.94670 1.74591 1.17266 1.13852 1.02831 1.85304 1.47426 1.29586 1.35269 1.29036 0.94626 0.93970 0.86166 1.19050 0.87771 0.86722 0.90386 0.86094 1.22392 0.95464 1.03093 1.01923 1.43161 1.46656 1.08345 1.38635 1.18981 0.95807 0.85333 0.94854 1.20742 1.10826 0.94322 1.10729 1.22363 0.94766 0.99195 0.91921 1.49045 1.27380 1.08727 1.25243 1.19690 0.97349 0.81181 0.87631 1.21261 1.45619 1.00223 0.89307 0.91267 1.24948 0.94680 0.94690 0.99843 1.69915 1.44565 1.06075 1.32930 0.86334 0.78730 0.78192 0.83277 1.20365 1.21046 1.19717 1.77460 1.24889 0.91415 1.21854 1.71889 1.17130 1.13974 1.17737 0.91003 0.91809 0.92156 0.87969 0.92258 0.91012 0.91838 0.91429 0.89408 0.91306 0.76053 0.84921 0.81808 0.93880 0.92734 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.18 37.16 0.34 -0.76 16 2 C 0.00 -0.03 3.39 -91.77 -0.31 -0.34 16 3 C -0.14 -1.00 9.17 37.15 0.34 -0.66 16 4 C 0.17 2.05 6.72 -156.37 -1.05 1.00 16 5 N -0.38 -4.90 12.16 30.90 0.38 -4.53 16 6 O 0.08 1.06 11.13 18.11 0.20 1.26 16 7 C 0.18 2.22 7.26 -13.05 -0.09 2.12 16 8 C 0.27 3.05 3.11 -69.08 -0.22 2.83 16 9 H 0.12 1.31 7.14 -51.93 -0.37 0.93 16 10 C -0.17 -1.61 9.48 37.16 0.35 -1.26 16 11 N -0.72 -10.46 5.28 -54.70 -0.29 -10.75 16 12 C 0.31 5.58 8.14 -154.55 -1.26 4.32 16 13 C -0.33 -5.50 9.92 -39.82 -0.39 -5.89 16 14 C 0.07 1.26 11.44 -17.24 -0.20 1.07 16 15 N -0.32 -7.29 3.67 -62.56 -0.23 -7.52 16 16 C 0.26 6.51 6.26 -5.20 -0.03 6.48 16 17 C -0.53 -14.57 9.23 -34.44 -0.32 -14.88 16 18 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.90 -25.35 13.29 55.43 0.74 -24.62 16 21 Si 0.91 21.42 29.54 -169.99 -5.02 16.40 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 N -0.32 -7.32 12.42 31.41 0.39 -6.94 16 26 N -0.47 -5.95 11.55 -9.87 -0.11 -6.06 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.40 5.81 8.58 -40.82 -0.35 5.46 16 38 H 0.13 1.73 7.45 -52.49 -0.39 1.34 16 39 H 0.16 2.39 8.06 -52.49 -0.42 1.97 16 40 H 0.04 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.05 1.34 8.07 -51.93 -0.42 0.92 16 42 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 364.09 15.07 5.49 5.49 Total: -1.00 -31.40 364.09 -7.55 -38.94 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.15 Total: 2.72 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -2.94 Total: -4.40 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: 0.87 Total: -60.42 kcal Atomic # 8 Polarization: 1.06 SS G_CDS: 0.20 Total: 1.26 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.40 -7.55 -38.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086154380.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.104 kcal (2) G-P(sol) polarization free energy of solvation -31.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds