Wall clock time and date at job start Tue Mar 31 2020 09:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.29946 * 126.28244 * 300.02057 * 4 2 1 6 6 O 1.21300 * 110.24632 * 179.97438 * 5 4 2 7 7 C 1.33639 * 109.81676 * 0.02562 * 6 5 4 8 8 C 1.50697 * 126.55504 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.47456 * 164.97884 * 8 7 6 10 10 C 1.53000 * 109.47290 * 284.97842 * 8 7 6 11 11 N 1.46502 * 109.47074 * 44.97635 * 8 7 6 12 12 C 1.39987 * 120.00022 * 154.99915 * 11 8 7 13 13 C 1.40432 * 125.97315 * 0.02562 * 12 11 8 14 14 C 1.35255 * 107.86022 * 179.97438 * 13 12 11 15 15 N 1.34963 * 107.86374 * 359.97438 * 14 13 12 16 16 C 1.46493 * 125.97163 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47080 * 125.00259 * 16 15 14 18 18 H 1.07997 * 120.00155 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99953 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00124 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99878 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46909 * 90.00395 * 21 19 17 23 23 H 1.48493 * 109.47152 * 210.00191 * 21 19 17 24 24 H 1.48494 * 109.47267 * 330.00535 * 21 19 17 25 25 N 1.31217 * 125.97893 * 179.69183 * 12 11 8 26 26 N 1.31140 * 106.89440 * 359.76839 * 7 6 5 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 34 34 H 1.09001 * 109.46837 * 59.99663 * 10 8 7 35 35 H 1.08995 * 109.47326 * 179.97438 * 10 8 7 36 36 H 1.09004 * 109.46949 * 300.00282 * 10 8 7 37 37 H 0.96997 * 119.99976 * 335.00174 * 11 8 7 38 38 H 1.07998 * 126.07482 * 0.02562 * 13 12 11 39 39 H 1.08001 * 126.06422 * 180.02562 * 14 13 12 40 40 H 1.09002 * 109.47263 * 244.99969 * 16 15 14 41 41 H 1.08995 * 109.47339 * 4.99852 * 16 15 14 42 42 H 0.96999 * 120.00545 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7946 -0.3750 2.4631 6 8 2.3409 -1.1482 3.2215 7 6 2.9994 -2.0783 2.5235 8 6 3.8066 -3.2192 3.0870 9 1 3.9985 -3.9510 2.3022 10 6 5.1366 -2.6867 3.6239 11 7 3.0600 -3.8549 4.1754 12 6 3.3079 -5.1922 4.5066 13 6 4.2394 -6.0376 3.8824 14 6 4.1770 -7.2443 4.4901 15 7 3.2439 -7.1704 5.4624 16 6 2.8560 -8.2553 6.3670 17 6 2.9994 -7.7945 7.7946 18 1 3.3453 -6.7937 8.0069 19 6 2.6889 -8.6506 8.8299 20 7 2.2682 -9.8695 8.5716 21 14 2.8674 -8.0796 10.5995 22 1 1.5925 -7.4676 11.0531 23 1 3.1936 -9.2419 11.4642 24 1 3.9576 -7.0753 10.6881 25 7 2.7150 -5.8733 5.4587 26 7 2.8052 -1.8109 1.2544 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 4.9447 -1.9550 4.4087 35 1 5.7203 -3.5119 4.0319 36 1 5.6921 -2.2137 2.8141 37 1 2.3938 -3.3491 4.6666 38 1 4.8908 -5.7713 3.0631 39 1 4.7693 -8.1126 4.2418 40 1 1.8192 -8.5334 6.1774 41 1 3.5003 -9.1179 6.1972 42 1 2.0502 -10.4720 9.2999 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086154380.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:14:18 Heat of formation + Delta-G solvation = 120.522669 kcal Electronic energy + Delta-G solvation = -24009.752972 eV Core-core repulsion = 20415.038055 eV Total energy + Delta-G solvation = -3594.714917 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -46.74840 -41.77983 -38.14701 -37.95339 -35.75030 -35.29692 -33.58318 -32.22705 -31.25322 -30.15716 -28.32132 -28.18702 -25.98061 -25.70193 -24.73338 -23.62725 -21.96669 -21.32931 -20.51347 -19.21900 -18.72239 -18.62045 -18.12972 -17.24240 -16.50484 -16.15653 -16.02358 -15.70402 -15.50652 -15.17460 -14.73351 -14.46702 -14.31913 -14.12374 -13.72183 -13.64778 -13.57797 -13.23450 -13.06767 -12.88234 -12.76931 -12.69013 -12.66546 -12.56633 -12.30865 -12.24524 -12.18088 -11.91188 -11.80692 -11.24132 -11.10301 -10.97818 -10.68383 -9.48738 -8.64795 -8.27342 -6.43591 -0.05272 1.05041 1.34746 1.38290 1.41412 1.50921 1.59296 1.66227 2.27239 2.32664 2.41892 2.77313 3.00109 3.01202 3.62497 3.94041 3.99064 4.01615 4.05043 4.13000 4.23125 4.43400 4.61313 4.65321 4.67074 4.70254 4.81728 4.82453 4.87295 4.93349 4.97089 5.00454 5.06041 5.10349 5.20229 5.25889 5.27849 5.55612 5.60708 5.87464 6.22054 6.41313 6.64684 6.73125 7.01405 7.26322 7.33936 8.77014 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.025622 B = 0.002496 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.545949 B =11214.041464 C =11465.895145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.007 4.007 3 C -0.139 4.139 4 C 0.173 3.827 5 N -0.397 5.397 6 O 0.070 5.930 7 C 0.186 3.814 8 C 0.272 3.728 9 H 0.134 0.866 10 C -0.163 4.163 11 N -0.719 5.719 12 C 0.314 3.686 13 C -0.318 4.318 14 C 0.065 3.935 15 N -0.356 5.356 16 C 0.275 3.725 17 C -0.542 4.542 18 H 0.051 0.949 19 C 0.016 3.984 20 N -0.922 5.922 21 Si 0.970 3.030 22 H -0.276 1.276 23 H -0.272 1.272 24 H -0.271 1.271 25 N -0.386 5.386 26 N -0.484 5.484 27 H 0.098 0.902 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.114 0.886 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.402 0.598 38 H 0.175 0.825 39 H 0.197 0.803 40 H 0.013 0.987 41 H 0.057 0.943 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.331 18.291 -18.793 26.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.027 4.027 3 C -0.198 4.198 4 C -0.100 4.100 5 N -0.106 5.106 6 O 0.014 5.986 7 C -0.036 4.036 8 C 0.164 3.836 9 H 0.152 0.848 10 C -0.222 4.222 11 N -0.363 5.363 12 C 0.057 3.943 13 C -0.351 4.351 14 C -0.084 4.084 15 N -0.137 5.137 16 C 0.155 3.845 17 C -0.581 4.581 18 H 0.069 0.931 19 C -0.184 4.184 20 N -0.561 5.561 21 Si 0.794 3.206 22 H -0.202 1.202 23 H -0.196 1.196 24 H -0.196 1.196 25 N -0.219 5.219 26 N -0.218 5.218 27 H 0.117 0.883 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.132 0.868 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.237 0.763 38 H 0.192 0.808 39 H 0.214 0.786 40 H 0.031 0.969 41 H 0.075 0.925 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.044 18.614 -18.026 26.090 hybrid contribution 0.100 -0.114 0.949 0.961 sum 3.143 18.500 -17.077 25.372 Atomic orbital electron populations 1.21848 0.92167 1.02269 1.03756 1.19834 0.96965 0.96050 0.89870 1.21829 1.01258 0.92954 1.03713 1.26541 0.95755 0.92342 0.95344 1.74595 1.18133 1.14474 1.03421 1.85286 1.47790 1.29894 1.35580 1.29157 0.94334 0.93898 0.86190 1.19290 0.87897 0.86658 0.89713 0.84849 1.22348 0.94293 1.03025 1.02534 1.43360 1.46744 1.07046 1.39123 1.19304 0.95016 0.86391 0.93607 1.21175 1.10097 0.92991 1.10793 1.23088 0.93723 1.01094 0.90483 1.48699 1.29706 1.08437 1.26825 1.19191 0.95675 0.82294 0.87295 1.21417 1.45952 0.99529 0.91153 0.93077 1.25738 0.94168 0.94763 1.03735 1.69992 1.44973 1.06891 1.34258 0.85378 0.78565 0.78063 0.78590 1.20183 1.19637 1.19598 1.77341 1.27490 0.92207 1.24821 1.71907 1.17636 1.14451 1.17819 0.88325 0.92976 0.93249 0.86755 0.92524 0.88463 0.92971 0.91793 0.89481 0.89094 0.76300 0.80775 0.78567 0.96912 0.92523 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.18 71.98 0.66 -1.28 16 2 C -0.01 -0.11 3.39 -11.54 -0.04 -0.15 16 3 C -0.14 -1.66 9.17 71.98 0.66 -1.00 16 4 C 0.17 3.90 6.72 138.47 0.93 4.83 16 5 N -0.40 -10.12 12.16 -60.33 -0.73 -10.86 16 6 O 0.07 1.77 11.13 74.87 0.83 2.60 16 7 C 0.19 4.26 7.26 88.38 0.64 4.90 16 8 C 0.27 5.60 3.11 44.24 0.14 5.74 16 9 H 0.13 2.46 7.14 -2.39 -0.02 2.45 16 10 C -0.16 -2.70 9.48 71.98 0.68 -2.02 16 11 N -0.72 -20.14 5.28 -326.97 -1.73 -21.87 16 12 C 0.31 11.21 8.14 133.39 1.09 12.29 16 13 C -0.32 -9.75 9.92 22.12 0.22 -9.53 16 14 C 0.07 2.29 11.44 83.52 0.96 3.24 16 15 N -0.36 -16.27 3.67 -351.86 -1.29 -17.56 16 16 C 0.27 14.30 6.26 85.63 0.54 14.83 16 17 C -0.54 -30.89 9.23 25.60 0.24 -30.65 16 18 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 19 C 0.02 0.89 5.46 84.66 0.46 1.35 16 20 N -0.92 -52.82 13.29 21.45 0.28 -52.54 16 21 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 N -0.39 -17.78 12.42 -54.55 -0.68 -18.45 16 26 N -0.48 -11.45 11.55 -303.21 -3.50 -14.95 16 27 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.40 11.58 8.58 -92.71 -0.80 10.78 16 38 H 0.17 3.78 7.45 -2.91 -0.02 3.76 16 39 H 0.20 5.28 8.06 -2.91 -0.02 5.25 16 40 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.06 2.86 8.07 -2.39 -0.02 2.84 16 42 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -69.56 364.09 2.62 -66.94 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.24 Total: 17.86 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 7.17 Total: 2.56 kcal Atomic # 7 Polarization: -128.58 SS G_CDS: -7.64 Total: -136.23 kcal Atomic # 8 Polarization: 1.77 SS G_CDS: 0.83 Total: 2.60 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -69.56 2.62 -66.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086154380.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.460 kcal (2) G-P(sol) polarization free energy of solvation -69.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds