Wall clock time and date at job start Tue Mar 31 2020 09:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.46991 * 2 1 4 4 C 1.50700 * 109.47171 * 119.99723 * 2 1 3 5 5 N 1.29946 * 126.28920 * 300.02495 * 4 2 1 6 6 O 1.21300 * 110.24622 * 179.97438 * 5 4 2 7 7 C 1.33635 * 109.81578 * 0.02562 * 6 5 4 8 8 C 1.50703 * 126.55020 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.47305 * 195.02035 * 8 7 6 10 10 C 1.53002 * 109.46755 * 75.02701 * 8 7 6 11 11 N 1.46497 * 109.47391 * 315.02767 * 8 7 6 12 12 C 1.39982 * 120.00251 * 204.99949 * 11 8 7 13 13 C 1.40437 * 125.97391 * 0.02562 * 12 11 8 14 14 C 1.35250 * 107.85958 * 180.28348 * 13 12 11 15 15 N 1.34961 * 107.86270 * 359.56877 * 14 13 12 16 16 C 1.46500 * 125.97119 * 180.12587 * 15 14 13 17 17 C 1.50689 * 109.47214 * 125.32898 * 16 15 14 18 18 H 1.08003 * 120.00190 * 0.02562 * 17 16 15 19 19 C 1.37883 * 120.00006 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99664 * 180.02562 * 19 17 16 21 21 Si 1.86789 * 120.00079 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47206 * 90.00153 * 21 19 17 23 23 H 1.48501 * 109.47231 * 210.00145 * 21 19 17 24 24 H 1.48505 * 109.47127 * 330.00063 * 21 19 17 25 25 N 1.31226 * 125.98130 * 180.02562 * 12 11 8 26 26 N 1.31126 * 106.89818 * 0.22372 * 7 6 5 27 27 H 1.09007 * 109.47063 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47489 * 299.99929 * 1 2 3 29 29 H 1.09001 * 109.47736 * 60.00441 * 1 2 3 30 30 H 1.09000 * 109.47175 * 240.00398 * 2 1 3 31 31 H 1.08995 * 109.47016 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.46796 * 299.99978 * 3 2 1 33 33 H 1.09000 * 109.46836 * 60.00191 * 3 2 1 34 34 H 1.08989 * 109.47504 * 60.00228 * 10 8 7 35 35 H 1.09003 * 109.46896 * 180.02562 * 10 8 7 36 36 H 1.09004 * 109.47093 * 299.99592 * 10 8 7 37 37 H 0.97008 * 119.99880 * 24.99568 * 11 8 7 38 38 H 1.08002 * 126.06597 * 0.02562 * 13 12 11 39 39 H 1.07999 * 126.06078 * 179.73612 * 14 13 12 40 40 H 1.08996 * 109.47147 * 245.33619 * 16 15 14 41 41 H 1.09005 * 109.46974 * 5.32861 * 16 15 14 42 42 H 0.97001 * 119.99836 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7945 -0.3748 2.4632 6 8 2.3409 -1.1480 3.2215 7 6 2.9994 -2.0780 2.5235 8 6 3.8067 -3.2190 3.0870 9 1 4.4334 -3.6430 2.3025 10 6 2.8618 -4.2964 3.6229 11 7 4.6538 -2.7267 4.1762 12 6 5.8323 -3.4054 4.5079 13 6 6.3207 -4.5642 3.8828 14 6 7.4760 -4.9103 4.4951 15 7 7.7187 -4.0030 5.4643 16 6 8.8700 -3.9987 6.3702 17 6 9.5710 -2.6675 6.2852 18 1 9.1961 -1.9010 5.6230 19 6 10.6910 -2.4278 7.0529 20 7 11.3025 -1.2658 6.9791 21 14 11.3398 -3.7536 8.1976 22 1 12.3229 -4.5971 7.4713 23 1 12.0004 -3.1187 9.3663 24 1 10.2121 -4.5991 8.6653 25 7 6.6739 -3.0701 5.4572 26 7 2.8133 -1.8050 1.2545 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.6765 1.9564 -0.8901 33 1 1.6766 1.9563 0.8900 34 1 2.2316 -4.6628 2.8127 35 1 3.4457 -5.1215 4.0310 36 1 2.2350 -3.8725 4.4075 37 1 4.3980 -1.9304 4.6676 38 1 5.8542 -5.0886 3.0618 39 1 8.0956 -5.7601 4.2498 40 1 8.5291 -4.1653 7.3919 41 1 9.5607 -4.7919 6.0837 42 1 12.0902 -1.0970 7.5194 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086154382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:14:21 Heat of formation + Delta-G solvation = 147.363702 kcal Electronic energy + Delta-G solvation = -24051.390178 eV Core-core repulsion = 20457.839176 eV Total energy + Delta-G solvation = -3593.551002 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.78807 -40.39636 -37.14570 -37.07541 -34.69391 -33.52496 -32.25264 -31.09700 -30.09147 -28.93142 -27.59699 -26.96755 -25.05155 -24.75096 -22.82376 -22.51929 -20.72100 -19.99836 -19.43644 -18.24147 -17.76992 -17.04768 -16.76903 -16.01140 -15.38889 -14.99119 -14.76306 -14.49564 -14.38108 -13.98161 -13.80894 -13.43559 -13.11311 -12.79861 -12.63856 -12.52028 -12.40981 -12.29003 -12.17960 -12.01054 -11.92470 -11.70086 -11.49493 -11.42696 -11.11578 -11.09020 -10.71583 -10.48976 -10.12230 -9.85261 -9.74694 -9.41905 -8.74443 -8.07434 -7.23082 -6.21110 -4.23041 0.91666 1.99348 2.53765 2.75984 2.84887 3.16316 3.23412 3.24805 3.39866 3.59439 3.78460 4.05071 4.24652 4.43641 4.63496 4.64764 4.82109 4.92972 5.02207 5.06716 5.21637 5.30527 5.34850 5.40060 5.42261 5.47111 5.55813 5.60826 5.71030 5.79048 5.80452 5.90888 5.97452 6.11487 6.31577 6.39409 6.62656 6.85858 7.29788 7.42813 7.83532 7.93299 7.99997 8.37061 8.69808 8.90256 9.33983 10.91747 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.024000 B = 0.002618 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.407049 B =10694.030767 C =11431.320099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.004 4.004 3 C -0.146 4.146 4 C 0.174 3.826 5 N -0.378 5.378 6 O 0.083 5.917 7 C 0.183 3.817 8 C 0.270 3.730 9 H 0.122 0.878 10 C -0.168 4.168 11 N -0.723 5.723 12 C 0.308 3.692 13 C -0.329 4.329 14 C 0.069 3.931 15 N -0.324 5.324 16 C 0.233 3.767 17 C -0.532 4.532 18 H 0.085 0.915 19 C 0.075 3.925 20 N -0.888 5.888 21 Si 0.873 3.127 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.264 1.264 25 N -0.318 5.318 26 N -0.473 5.473 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.405 0.595 38 H 0.135 0.865 39 H 0.166 0.834 40 H 0.041 0.959 41 H 0.047 0.953 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.920 -4.462 -12.669 24.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 C -0.205 4.205 4 C -0.099 4.099 5 N -0.085 5.085 6 O 0.024 5.976 7 C -0.039 4.039 8 C 0.160 3.840 9 H 0.139 0.861 10 C -0.228 4.228 11 N -0.367 5.367 12 C 0.052 3.948 13 C -0.362 4.362 14 C -0.082 4.082 15 N -0.104 5.104 16 C 0.114 3.886 17 C -0.571 4.571 18 H 0.103 0.897 19 C -0.129 4.129 20 N -0.526 5.526 21 Si 0.699 3.301 22 H -0.198 1.198 23 H -0.206 1.206 24 H -0.189 1.189 25 N -0.149 5.149 26 N -0.206 5.206 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.241 0.759 38 H 0.153 0.847 39 H 0.183 0.817 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.792 -2.998 -11.892 23.284 hybrid contribution 0.402 -0.931 0.243 1.043 sum -19.390 -3.929 -11.649 22.959 Atomic orbital electron populations 1.21851 0.92858 1.02547 1.03017 1.19572 0.96376 0.95489 0.90939 1.21864 1.01740 0.93854 1.03003 1.25864 0.96579 0.92753 0.94673 1.74588 1.17439 1.13601 1.02839 1.85299 1.47402 1.29603 1.35277 1.28997 0.94865 0.93863 0.86199 1.19051 0.89201 0.85347 0.90361 0.86077 1.22384 0.99662 0.98779 1.01963 1.43174 1.22148 1.32862 1.38524 1.18995 0.88103 0.92516 0.95153 1.20765 1.01886 1.03327 1.10188 1.22355 0.97603 0.96226 0.92043 1.48579 1.17937 1.17499 1.26338 1.19991 0.80472 0.99823 0.88305 1.21114 1.10973 0.98257 1.26710 0.89653 1.24847 0.96077 0.95611 0.96328 1.69880 1.20059 1.22307 1.40339 0.86905 0.79785 0.82169 0.81220 1.19763 1.20583 1.18864 1.77529 0.99124 1.15150 1.23050 1.71884 1.16877 1.14143 1.17734 0.92287 0.91834 0.91017 0.87960 0.92094 0.90996 0.91800 0.91257 0.89517 0.91429 0.75925 0.84711 0.81707 0.94165 0.93550 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.17 37.15 0.34 -0.69 16 2 C 0.00 -0.03 3.39 -91.77 -0.31 -0.34 16 3 C -0.15 -1.18 9.18 37.16 0.34 -0.84 16 4 C 0.17 2.11 6.72 -156.37 -1.05 1.06 16 5 N -0.38 -4.99 12.16 30.89 0.38 -4.62 16 6 O 0.08 1.07 11.13 18.12 0.20 1.27 16 7 C 0.18 2.23 7.26 -13.06 -0.09 2.14 16 8 C 0.27 3.01 3.11 -69.08 -0.22 2.80 16 9 H 0.12 1.31 7.14 -51.93 -0.37 0.94 16 10 C -0.17 -1.50 9.48 37.16 0.35 -1.14 16 11 N -0.72 -10.40 5.28 -54.70 -0.29 -10.69 16 12 C 0.31 5.56 8.14 -154.55 -1.26 4.30 16 13 C -0.33 -5.26 9.92 -39.82 -0.40 -5.66 16 14 C 0.07 1.20 11.44 -17.24 -0.20 1.00 16 15 N -0.32 -7.07 3.67 -62.56 -0.23 -7.30 16 16 C 0.23 5.45 5.33 -5.20 -0.03 5.42 16 17 C -0.53 -15.03 9.79 -34.44 -0.34 -15.37 16 18 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 19 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 20 N -0.89 -26.80 13.96 55.43 0.77 -26.02 16 21 Si 0.87 20.10 27.47 -169.99 -4.67 15.43 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 25 N -0.32 -7.11 12.42 31.41 0.39 -6.72 16 26 N -0.47 -6.08 11.55 -9.87 -0.11 -6.19 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.41 5.84 8.58 -40.82 -0.35 5.49 16 38 H 0.14 1.69 7.45 -52.49 -0.39 1.30 16 39 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 40 H 0.04 0.94 7.20 -51.93 -0.37 0.57 16 41 H 0.05 0.98 7.50 -51.93 -0.39 0.59 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 360.50 15.07 5.43 5.43 Total: -1.00 -33.16 360.50 -7.19 -40.36 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.11 Total: 4.35 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -2.95 Total: -5.31 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: 0.91 Total: -61.53 kcal Atomic # 8 Polarization: 1.07 SS G_CDS: 0.20 Total: 1.27 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.67 Total: 15.43 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.16 -7.19 -40.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086154382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.722 kcal (2) G-P(sol) polarization free energy of solvation -33.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds