Wall clock time and date at job start Tue Mar 31 2020 09:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46540 * 2 1 4 4 C 1.50699 * 109.47517 * 119.99961 * 2 1 3 5 5 O 1.21280 * 120.00081 * 106.50791 * 4 2 1 6 6 N 1.34785 * 119.99938 * 286.51018 * 4 2 1 7 7 C 1.46496 * 119.99871 * 184.90547 * 6 4 2 8 8 C 1.50703 * 109.47156 * 270.00060 * 7 6 4 9 9 H 1.08003 * 119.99878 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00361 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00672 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 119.99669 * 359.97438 * 10 8 7 13 13 H 1.48505 * 109.46696 * 90.00511 * 12 10 8 14 14 H 1.48499 * 109.47080 * 209.99922 * 12 10 8 15 15 H 1.48497 * 109.47476 * 330.00734 * 12 10 8 16 16 C 1.46496 * 119.99991 * 4.90592 * 6 4 2 17 17 C 1.53008 * 109.46972 * 264.67166 * 16 6 4 18 18 C 1.52997 * 117.49645 * 243.74686 * 17 16 6 19 19 C 1.52997 * 117.49983 * 175.08749 * 17 16 6 20 20 C 1.50696 * 109.47379 * 240.00265 * 2 1 3 21 21 C 1.38214 * 120.01258 * 299.72379 * 20 2 1 22 22 C 1.38225 * 120.02972 * 179.72285 * 21 20 2 23 23 C 1.38274 * 120.04258 * 0.54878 * 22 21 20 24 24 C 1.38172 * 120.02941 * 359.72798 * 23 22 21 25 25 C 1.38434 * 120.01340 * 119.99496 * 20 2 1 26 26 F 1.35108 * 120.02830 * 0.02562 * 25 20 2 27 27 H 1.08998 * 109.47796 * 49.72787 * 1 2 3 28 28 H 1.09010 * 109.46524 * 169.72890 * 1 2 3 29 29 H 1.09006 * 109.47131 * 289.71919 * 1 2 3 30 30 H 1.09001 * 109.47505 * 29.99608 * 7 6 4 31 31 H 1.09002 * 109.47306 * 149.99948 * 7 6 4 32 32 H 0.96993 * 120.00829 * 179.97438 * 11 10 8 33 33 H 1.09002 * 109.47421 * 24.66734 * 16 6 4 34 34 H 1.08999 * 109.47414 * 144.67419 * 16 6 4 35 35 H 1.08997 * 115.55166 * 29.41303 * 17 16 6 36 36 H 1.09004 * 117.50035 * 359.97438 * 18 17 16 37 37 H 1.08999 * 117.49856 * 145.01527 * 18 17 16 38 38 H 1.08999 * 117.50017 * 214.97899 * 19 17 16 39 39 H 1.09008 * 117.49816 * 359.97438 * 19 17 16 40 40 H 1.07999 * 119.99033 * 359.97438 * 21 20 2 41 41 H 1.07995 * 119.97894 * 180.27412 * 22 21 20 42 42 H 1.08011 * 119.98356 * 179.74712 * 23 22 21 43 43 H 1.08002 * 120.00845 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.5159 -1.8186 1.1359 6 7 1.9443 -0.1141 2.4360 7 6 2.5289 -0.7570 3.6155 8 6 1.5011 -1.6492 4.2625 9 1 0.5115 -1.7297 3.8373 10 6 1.8239 -2.3628 5.3972 11 7 0.9269 -3.1410 5.9622 12 14 3.5357 -2.2241 6.1322 13 1 3.5611 -1.1171 7.1219 14 1 3.8896 -3.4989 6.8064 15 1 4.5168 -1.9457 5.0529 16 6 1.2641 1.1767 2.5668 17 6 2.2948 2.3055 2.4986 18 6 2.4677 3.1802 3.7419 19 6 1.7698 3.7426 2.5011 20 6 2.0324 -0.7103 -1.2304 21 6 1.7034 -2.0352 -1.4466 22 6 2.1592 -2.6855 -2.5780 23 6 2.9542 -2.0146 -3.4890 24 6 3.2891 -0.6917 -3.2721 25 6 2.8282 -0.0377 -2.1419 26 9 3.1554 1.2557 -1.9286 27 1 -0.3634 0.6643 -0.7840 28 1 -0.3633 -1.0113 -0.1833 29 1 -0.3634 0.3468 0.9674 30 1 3.3901 -1.3536 3.3149 31 1 2.8459 0.0066 4.3259 32 1 1.1541 -3.6433 6.7602 33 1 0.5447 1.2922 1.7561 34 1 0.7432 1.2177 3.5234 35 1 3.1834 2.0954 1.9035 36 1 1.8470 2.9518 4.6084 37 1 3.4701 3.5458 3.9646 38 1 2.3132 4.4780 1.9079 39 1 0.6900 3.8839 2.5509 40 1 1.0865 -2.5616 -0.7333 41 1 1.8980 -3.7194 -2.7483 42 1 3.3133 -2.5248 -4.3707 43 1 3.9097 -0.1680 -3.9841 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108994557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:11:55 Heat of formation + Delta-G solvation = -44.524538 kcal Electronic energy + Delta-G solvation = -25594.783842 eV Core-core repulsion = 21940.699228 eV Total energy + Delta-G solvation = -3654.084614 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.91676 -41.41243 -39.67897 -38.37161 -36.15997 -35.41507 -34.46825 -31.47465 -30.98292 -29.85345 -27.84234 -25.90272 -24.58373 -23.60913 -23.16696 -22.53631 -21.64720 -20.00324 -19.09373 -18.65996 -18.06253 -17.64656 -17.05159 -16.60730 -16.54612 -16.27645 -16.02643 -15.79898 -15.16868 -15.04402 -14.83005 -14.62660 -14.33446 -14.08816 -13.86289 -13.65376 -13.51523 -13.23244 -12.95952 -12.91632 -12.85147 -12.59089 -12.41284 -12.28900 -12.16082 -12.03843 -11.84858 -11.77435 -11.27826 -10.83551 -10.81955 -10.54007 -9.87233 -9.60124 -9.44325 -8.34925 -6.38913 0.18530 0.30941 1.28722 1.32872 1.43521 1.72994 2.19082 2.29195 2.69734 2.94700 2.99177 3.28154 3.42472 3.55915 3.81380 3.92617 4.00830 4.08225 4.13228 4.16452 4.22266 4.36477 4.42352 4.45395 4.51068 4.71476 4.73691 4.76777 4.82551 4.84981 4.95164 4.98544 5.06174 5.11849 5.14417 5.22443 5.30131 5.32530 5.44197 5.45497 5.52591 5.63025 5.97595 6.23001 6.61284 6.65791 7.20467 7.37302 8.81943 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.012641 B = 0.005214 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.455003 B = 5368.460249 C = 6731.041960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.063 4.063 3 H 0.116 0.884 4 C 0.506 3.494 5 O -0.579 6.579 6 N -0.593 5.593 7 C 0.230 3.770 8 C -0.530 4.530 9 H 0.031 0.969 10 C 0.015 3.985 11 N -0.943 5.943 12 Si 0.942 3.058 13 H -0.251 1.251 14 H -0.280 1.280 15 H -0.260 1.260 16 C 0.127 3.873 17 C -0.187 4.187 18 C -0.186 4.186 19 C -0.147 4.147 20 C -0.117 4.117 21 C -0.073 4.073 22 C -0.136 4.136 23 C -0.085 4.085 24 C -0.157 4.157 25 C 0.084 3.916 26 F -0.144 7.144 27 H 0.098 0.902 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.014 0.986 31 H 0.043 0.957 32 H 0.268 0.732 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.147 0.853 42 H 0.168 0.832 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.196 12.517 -17.635 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.084 4.084 3 H 0.134 0.866 4 C 0.294 3.706 5 O -0.459 6.459 6 N -0.322 5.322 7 C 0.108 3.892 8 C -0.568 4.568 9 H 0.050 0.950 10 C -0.183 4.183 11 N -0.583 5.583 12 Si 0.765 3.235 13 H -0.176 1.176 14 H -0.206 1.206 15 H -0.185 1.185 16 C 0.005 3.995 17 C -0.207 4.207 18 C -0.223 4.223 19 C -0.184 4.184 20 C -0.119 4.119 21 C -0.091 4.091 22 C -0.154 4.154 23 C -0.103 4.103 24 C -0.176 4.176 25 C 0.065 3.935 26 F -0.123 7.123 27 H 0.117 0.883 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.032 0.968 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.127 0.873 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.165 0.835 42 H 0.185 0.815 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.423 11.882 -17.493 21.285 hybrid contribution 0.566 -0.407 1.184 1.374 sum 2.990 11.475 -16.309 20.165 Atomic orbital electron populations 1.21958 0.90221 1.03585 1.04036 1.20182 0.99227 1.00203 0.88824 0.86645 1.20998 0.78598 0.85786 0.85189 1.90636 1.47355 1.21285 1.86590 1.47877 1.55775 1.21312 1.07276 1.19249 0.93266 0.92704 0.83997 1.21500 0.98634 1.26396 1.10312 0.95036 1.25757 1.01354 0.94154 0.97041 1.70032 1.36575 1.29874 1.21868 0.85800 0.79816 0.78689 0.79221 1.17566 1.20572 1.18483 1.21588 0.93971 0.80098 1.03868 1.22697 1.01553 0.92573 1.03846 1.23115 1.02668 1.04019 0.92477 1.23043 1.01622 0.93711 1.00018 1.19508 1.00898 0.95751 0.95705 1.20947 0.98559 0.92860 0.96715 1.21512 0.98634 1.01375 0.93865 1.21401 0.95838 0.93154 0.99879 1.21405 1.02778 0.96474 0.96928 1.17722 0.99582 0.79094 0.97123 1.91444 1.91138 1.34691 1.94998 0.88319 0.92531 0.90783 0.96770 0.93888 0.92287 0.87313 0.90907 0.88852 0.89022 0.88411 0.87139 0.87209 0.87075 0.83473 0.81475 0.82252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 8.69 71.98 0.63 -3.03 16 2 C -0.06 -1.97 2.06 -12.29 -0.03 -1.99 16 3 H 0.12 3.22 6.49 -2.38 -0.02 3.21 16 4 C 0.51 21.37 6.85 87.66 0.60 21.97 16 5 O -0.58 -29.67 14.31 -3.03 -0.04 -29.71 16 6 N -0.59 -24.98 2.46 -826.14 -2.03 -27.01 16 7 C 0.23 11.60 4.21 85.63 0.36 11.96 16 8 C -0.53 -31.58 9.94 25.60 0.25 -31.33 16 9 H 0.03 2.09 8.06 -2.91 -0.02 2.06 16 10 C 0.02 0.90 5.47 84.65 0.46 1.36 16 11 N -0.94 -59.96 13.96 21.45 0.30 -59.66 16 12 Si 0.94 45.36 27.47 68.60 1.88 47.24 16 13 H -0.25 -11.11 7.11 99.48 0.71 -10.40 16 14 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 15 H -0.26 -12.30 6.54 99.48 0.65 -11.65 16 16 C 0.13 4.02 5.13 86.38 0.44 4.47 16 17 C -0.19 -4.95 5.79 -10.79 -0.06 -5.01 16 18 C -0.19 -4.39 10.18 30.62 0.31 -4.08 16 19 C -0.15 -2.79 10.25 30.62 0.31 -2.47 16 20 C -0.12 -3.59 4.54 -19.82 -0.09 -3.68 16 21 C -0.07 -2.22 7.71 22.26 0.17 -2.05 16 22 C -0.14 -3.20 10.05 22.28 0.22 -2.97 16 23 C -0.09 -1.61 10.04 22.26 0.22 -1.39 16 24 C -0.16 -3.31 10.03 22.31 0.22 -3.09 16 25 C 0.08 2.27 7.25 22.37 0.16 2.43 16 26 F -0.14 -3.88 16.20 44.97 0.73 -3.15 16 27 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.06 1.58 7.10 -2.38 -0.02 1.56 16 29 H 0.07 1.92 5.55 -2.38 -0.01 1.90 16 30 H 0.01 0.78 6.55 -2.39 -0.02 0.77 16 31 H 0.04 2.02 7.50 -2.39 -0.02 2.00 16 32 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 33 H 0.11 2.86 4.14 -2.39 -0.01 2.85 16 34 H 0.07 2.47 7.84 -2.39 -0.02 2.45 16 35 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.09 2.28 8.03 -2.39 -0.02 2.26 16 37 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.11 3.85 7.15 -2.91 -0.02 3.83 16 41 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 42 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 43 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -76.74 354.95 6.00 -70.74 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.96 Total: 20.45 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: 4.20 Total: -18.90 kcal Atomic # 7 Polarization: -84.94 SS G_CDS: -1.73 Total: -86.67 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.04 Total: -29.71 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.73 Total: -3.15 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.24 kcal Total: -76.74 6.00 -70.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108994557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.217 kcal (2) G-P(sol) polarization free energy of solvation -76.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds