Wall clock time and date at job start Tue Mar 31 2020 09:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.78906 * 2 1 4 4 S 1.81902 * 109.63329 * 120.49258 * 2 1 3 5 5 C 1.81899 * 101.91257 * 68.40179 * 4 2 1 6 6 C 1.53245 * 108.50364 * 51.30662 * 5 4 2 7 7 N 1.46467 * 109.86342 * 297.99292 * 6 5 4 8 8 C 1.46893 * 111.00377 * 197.76739 * 7 6 5 9 9 C 1.53004 * 109.46906 * 66.05020 * 8 7 6 10 10 C 1.53002 * 109.47190 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47346 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99570 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99899 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00316 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99827 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47280 * 89.99601 * 15 13 11 17 17 H 1.48497 * 109.47043 * 209.99896 * 15 13 11 18 18 H 1.48500 * 109.47362 * 329.99819 * 15 13 11 19 19 C 1.46469 * 112.55614 * 72.65841 * 7 6 5 20 20 H 1.09001 * 109.40948 * 47.38773 * 19 7 6 21 21 C 1.50701 * 109.40691 * 167.22630 * 19 7 6 22 22 C 1.38236 * 119.99694 * 39.72846 * 21 19 7 23 23 C 1.38236 * 119.99804 * 179.78776 * 22 21 19 24 24 C 1.38239 * 119.99997 * 0.43991 * 23 22 21 25 25 C 1.38233 * 119.99638 * 359.81418 * 24 23 22 26 26 C 1.38230 * 120.00178 * 219.99733 * 21 19 7 27 27 H 1.09002 * 109.47476 * 299.50241 * 1 2 3 28 28 H 1.09000 * 109.47646 * 59.50535 * 1 2 3 29 29 H 1.09006 * 109.46909 * 179.50890 * 1 2 3 30 30 H 1.08999 * 109.62879 * 171.01071 * 5 4 2 31 31 H 1.09000 * 109.63186 * 291.59772 * 5 4 2 32 32 H 1.09001 * 109.41098 * 58.11963 * 6 5 4 33 33 H 1.09003 * 109.40407 * 177.95895 * 6 5 4 34 34 H 1.09007 * 109.47076 * 186.04348 * 8 7 6 35 35 H 1.08995 * 109.47318 * 306.04794 * 8 7 6 36 36 H 1.08998 * 109.46884 * 299.99420 * 9 8 7 37 37 H 1.08995 * 109.47317 * 59.99774 * 9 8 7 38 38 H 1.09006 * 109.47122 * 299.99773 * 10 9 8 39 39 H 1.08995 * 109.47307 * 59.99606 * 10 9 8 40 40 H 0.96992 * 119.99987 * 180.02562 * 14 13 11 41 41 H 1.08000 * 120.00238 * 0.02562 * 22 21 19 42 42 H 1.07997 * 120.00177 * 180.27344 * 23 22 21 43 43 H 1.07998 * 120.00077 * 179.83095 * 24 23 22 44 44 H 1.08002 * 119.99783 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.00180 * 359.97438 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 16 2.1411 -0.8694 1.4763 5 6 1.6502 -2.5865 1.1310 6 6 2.1486 -2.9627 -0.2684 7 7 1.5188 -2.0991 -1.2699 8 6 1.6326 -2.6814 -2.6136 9 6 0.8147 -3.9728 -2.6807 10 6 0.9337 -4.5797 -4.0802 11 6 0.1286 -5.8520 -4.1462 12 1 -0.4133 -6.1937 -3.2767 13 6 0.0848 -6.5801 -5.3161 14 7 0.7451 -6.1642 -6.3747 15 14 -0.9124 -8.1575 -5.3976 16 1 -2.2979 -7.8454 -5.8316 17 1 -0.2869 -9.0889 -6.3705 18 1 -0.9454 -8.7923 -4.0555 19 6 2.0449 -0.7324 -1.2438 20 1 3.1341 -0.7640 -1.2191 21 6 1.5932 0.0017 -2.4800 22 6 0.3102 -0.1799 -2.9615 23 6 -0.1056 0.4968 -4.0930 24 6 0.7646 1.3481 -4.7481 25 6 2.0492 1.5256 -4.2694 26 6 2.4635 0.8522 -3.1355 27 1 -0.3634 0.5061 0.8944 28 1 -0.3634 0.5215 -0.8855 29 1 -0.3633 -1.0277 -0.0088 30 1 2.0978 -3.2509 1.8701 31 1 0.5642 -2.6714 1.1682 32 1 3.2307 -2.8395 -0.3129 33 1 1.8936 -4.0019 -0.4764 34 1 1.2535 -1.9727 -3.3500 35 1 2.6784 -2.9022 -2.8266 36 1 1.1937 -4.6815 -1.9444 37 1 -0.2312 -3.7520 -2.4678 38 1 0.5550 -3.8711 -4.8169 39 1 1.9796 -4.8006 -4.2928 40 1 0.7140 -6.6763 -7.1978 41 1 -0.3686 -0.8475 -2.4516 42 1 -1.1093 0.3584 -4.4667 43 1 0.4406 1.8747 -5.6336 44 1 2.7289 2.1910 -4.7810 45 1 3.4672 0.9911 -2.7615 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118423003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:33 Heat of formation + Delta-G solvation = 24.055832 kcal Electronic energy + Delta-G solvation = -23491.199115 eV Core-core repulsion = 20406.301545 eV Total energy + Delta-G solvation = -3084.897569 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.23341 -37.74999 -34.52836 -33.26289 -32.03508 -31.06159 -30.66133 -29.49246 -27.02319 -25.22398 -23.64133 -22.46880 -22.31666 -21.87936 -20.00496 -19.68832 -17.17469 -16.40568 -16.31178 -15.77287 -15.30898 -15.06218 -14.78065 -14.54352 -14.30671 -14.12702 -13.94236 -13.32633 -13.13171 -12.93875 -12.52461 -12.45608 -12.26781 -12.00124 -11.92330 -11.59652 -11.53245 -11.28823 -11.16035 -10.92430 -10.84891 -10.75597 -10.53733 -10.35349 -9.75944 -9.56785 -9.35608 -9.07403 -8.80344 -8.56947 -8.34621 -8.19953 -7.71718 -5.99873 -4.02159 1.34017 1.47514 1.76655 2.45576 3.31407 3.37757 3.40869 3.75386 3.89296 4.46028 4.66113 4.74403 4.84300 4.95556 5.01640 5.07940 5.17130 5.18533 5.24505 5.31271 5.36042 5.51339 5.56429 5.66546 5.71014 5.76810 5.82567 5.88460 5.92775 5.98978 6.02837 6.12520 6.29424 6.30946 6.49241 6.58822 6.60166 6.68104 6.73499 7.03919 7.09067 7.27808 7.28704 7.67956 7.82397 8.00323 8.43077 9.05042 9.61935 11.11472 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.012902 B = 0.004423 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.744379 B = 6328.316010 C = 7900.684694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.029 4.029 3 H 0.105 0.895 4 S -0.283 6.283 5 C -0.070 4.070 6 C 0.052 3.948 7 N -0.540 5.540 8 C 0.048 3.952 9 C -0.102 4.102 10 C 0.024 3.976 11 C -0.518 4.518 12 H 0.054 0.946 13 C 0.057 3.943 14 N -0.896 5.896 15 Si 0.890 3.110 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.131 3.869 20 H 0.057 0.943 21 C -0.080 4.080 22 C -0.086 4.086 23 C -0.124 4.124 24 C -0.118 4.118 25 C -0.125 4.125 26 C -0.115 4.115 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.028 0.972 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.015 0.985 39 H 0.012 0.988 40 H 0.260 0.740 41 H 0.135 0.865 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.083 15.736 10.740 19.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.158 4.158 3 H 0.123 0.877 4 S -0.055 6.055 5 C -0.219 4.219 6 C -0.077 4.077 7 N -0.265 5.265 8 C -0.078 4.078 9 C -0.140 4.140 10 C -0.014 4.014 11 C -0.556 4.556 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.535 5.535 15 Si 0.718 3.282 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C 0.021 3.979 20 H 0.075 0.925 21 C -0.082 4.082 22 C -0.104 4.104 23 C -0.142 4.142 24 C -0.136 4.136 25 C -0.143 4.143 26 C -0.133 4.133 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.062 0.938 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.153 0.847 42 H 0.141 0.859 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.206 16.115 11.639 20.000 hybrid contribution -0.190 -1.445 -1.426 2.039 sum 2.016 14.670 10.212 17.988 Atomic orbital electron populations 1.22056 0.92348 1.03710 1.01882 1.23198 0.99917 1.00240 0.92475 0.87668 1.86780 1.78790 1.08120 1.31773 1.23530 1.04879 0.93743 0.99727 1.22294 0.96769 0.98815 0.89860 1.61250 1.57807 1.00516 1.06937 1.22546 0.99087 0.98273 0.87859 1.21665 0.98594 0.93172 1.00599 1.19045 0.96950 0.95265 0.90135 1.21229 1.29700 1.07543 0.97174 0.92749 1.25015 0.95712 0.97853 0.95829 1.69966 1.42240 1.39264 1.02024 0.86621 0.80288 0.83427 0.77830 1.20665 1.21263 1.19904 1.20665 0.97015 0.88907 0.91349 0.92493 1.19627 0.94655 0.97818 0.96110 1.21175 0.95624 0.97828 0.95793 1.21218 1.00041 0.96991 0.95933 1.21155 0.94021 0.98754 0.99656 1.21034 0.96305 1.00277 0.96651 1.20964 0.99122 0.97293 0.95965 0.92513 0.91403 0.90744 0.87793 0.88893 0.93755 0.88372 0.89492 0.95387 0.93559 0.92699 0.96647 0.96933 0.93050 0.84711 0.85946 0.86324 0.86315 0.86453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.00 37.15 0.30 -1.27 16 2 C -0.03 -0.33 2.97 -26.61 -0.08 -0.41 16 3 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 4 S -0.28 -3.41 21.80 -107.50 -2.34 -5.75 16 5 C -0.07 -0.80 6.33 37.28 0.24 -0.56 16 6 C 0.05 0.67 5.29 -3.93 -0.02 0.65 16 7 N -0.54 -7.48 2.96 -228.43 -0.68 -8.16 16 8 C 0.05 0.82 4.26 -3.83 -0.02 0.80 16 9 C -0.10 -2.05 5.12 -26.73 -0.14 -2.19 16 10 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 11 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 12 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 15 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 C 0.13 1.64 1.86 -68.97 -0.13 1.51 16 20 H 0.06 0.75 7.77 -51.93 -0.40 0.35 16 21 C -0.08 -1.02 3.45 -104.62 -0.36 -1.38 16 22 C -0.09 -1.13 5.01 -39.58 -0.20 -1.33 16 23 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 24 C -0.12 -1.36 10.05 -39.58 -0.40 -1.75 16 25 C -0.12 -1.40 10.05 -39.59 -0.40 -1.80 16 26 C -0.11 -1.36 9.67 -39.59 -0.38 -1.74 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.75 5.73 -51.93 -0.30 0.45 16 29 H 0.07 0.91 6.68 -51.93 -0.35 0.56 16 30 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.09 1.07 7.56 -51.93 -0.39 0.68 16 32 H 0.04 0.58 7.91 -51.93 -0.41 0.17 16 33 H 0.10 1.35 5.88 -51.93 -0.31 1.05 16 34 H 0.09 1.52 4.59 -51.92 -0.24 1.29 16 35 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 36 H 0.05 0.91 6.26 -51.93 -0.33 0.58 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.14 1.85 6.78 -52.49 -0.36 1.50 16 42 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 44 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 45 H 0.12 1.21 8.04 -52.49 -0.42 0.79 16 LS Contribution 354.96 15.07 5.35 5.35 Total: -1.00 -29.63 354.96 -11.76 -41.38 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -7.27 Total: 1.06 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -2.53 Total: -24.29 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.06 Total: -34.35 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -2.34 Total: -5.75 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.63 -11.76 -41.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118423003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.437 kcal (2) G-P(sol) polarization free energy of solvation -29.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds