Wall clock time and date at job start Tue Mar 31 2020 09:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.78906 * 2 1 4 4 S 1.81902 * 109.63329 * 120.49258 * 2 1 3 5 5 C 1.81899 * 101.91257 * 68.40179 * 4 2 1 6 6 C 1.53245 * 108.50364 * 51.30662 * 5 4 2 7 7 N 1.46467 * 109.86342 * 297.99292 * 6 5 4 8 8 C 1.46893 * 111.00377 * 197.76739 * 7 6 5 9 9 C 1.53004 * 109.46906 * 66.05020 * 8 7 6 10 10 C 1.53002 * 109.47190 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47346 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99570 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99899 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00316 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99827 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47280 * 89.99601 * 15 13 11 17 17 H 1.48497 * 109.47043 * 209.99896 * 15 13 11 18 18 H 1.48500 * 109.47362 * 329.99819 * 15 13 11 19 19 C 1.46469 * 112.55614 * 72.65841 * 7 6 5 20 20 H 1.09001 * 109.40948 * 47.38773 * 19 7 6 21 21 C 1.50701 * 109.40691 * 167.22630 * 19 7 6 22 22 C 1.38236 * 119.99694 * 39.72846 * 21 19 7 23 23 C 1.38236 * 119.99804 * 179.78776 * 22 21 19 24 24 C 1.38239 * 119.99997 * 0.43991 * 23 22 21 25 25 C 1.38233 * 119.99638 * 359.81418 * 24 23 22 26 26 C 1.38230 * 120.00178 * 219.99733 * 21 19 7 27 27 H 1.09002 * 109.47476 * 299.50241 * 1 2 3 28 28 H 1.09000 * 109.47646 * 59.50535 * 1 2 3 29 29 H 1.09006 * 109.46909 * 179.50890 * 1 2 3 30 30 H 1.08999 * 109.62879 * 171.01071 * 5 4 2 31 31 H 1.09000 * 109.63186 * 291.59772 * 5 4 2 32 32 H 1.09001 * 109.41098 * 58.11963 * 6 5 4 33 33 H 1.09003 * 109.40407 * 177.95895 * 6 5 4 34 34 H 1.09007 * 109.47076 * 186.04348 * 8 7 6 35 35 H 1.08995 * 109.47318 * 306.04794 * 8 7 6 36 36 H 1.08998 * 109.46884 * 299.99420 * 9 8 7 37 37 H 1.08995 * 109.47317 * 59.99774 * 9 8 7 38 38 H 1.09006 * 109.47122 * 299.99773 * 10 9 8 39 39 H 1.08995 * 109.47307 * 59.99606 * 10 9 8 40 40 H 0.96992 * 119.99987 * 180.02562 * 14 13 11 41 41 H 1.08000 * 120.00238 * 0.02562 * 22 21 19 42 42 H 1.07997 * 120.00177 * 180.27344 * 23 22 21 43 43 H 1.07998 * 120.00077 * 179.83095 * 24 23 22 44 44 H 1.08002 * 119.99783 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.00180 * 359.97438 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 16 2.1411 -0.8694 1.4763 5 6 1.6502 -2.5865 1.1310 6 6 2.1486 -2.9627 -0.2684 7 7 1.5188 -2.0991 -1.2699 8 6 1.6326 -2.6814 -2.6136 9 6 0.8147 -3.9728 -2.6807 10 6 0.9337 -4.5797 -4.0802 11 6 0.1286 -5.8520 -4.1462 12 1 -0.4133 -6.1937 -3.2767 13 6 0.0848 -6.5801 -5.3161 14 7 0.7451 -6.1642 -6.3747 15 14 -0.9124 -8.1575 -5.3976 16 1 -2.2979 -7.8454 -5.8316 17 1 -0.2869 -9.0889 -6.3705 18 1 -0.9454 -8.7923 -4.0555 19 6 2.0449 -0.7324 -1.2438 20 1 3.1341 -0.7640 -1.2191 21 6 1.5932 0.0017 -2.4800 22 6 0.3102 -0.1799 -2.9615 23 6 -0.1056 0.4968 -4.0930 24 6 0.7646 1.3481 -4.7481 25 6 2.0492 1.5256 -4.2694 26 6 2.4635 0.8522 -3.1355 27 1 -0.3634 0.5061 0.8944 28 1 -0.3634 0.5215 -0.8855 29 1 -0.3633 -1.0277 -0.0088 30 1 2.0978 -3.2509 1.8701 31 1 0.5642 -2.6714 1.1682 32 1 3.2307 -2.8395 -0.3129 33 1 1.8936 -4.0019 -0.4764 34 1 1.2535 -1.9727 -3.3500 35 1 2.6784 -2.9022 -2.8266 36 1 1.1937 -4.6815 -1.9444 37 1 -0.2312 -3.7520 -2.4678 38 1 0.5550 -3.8711 -4.8169 39 1 1.9796 -4.8006 -4.2928 40 1 0.7140 -6.6763 -7.1978 41 1 -0.3686 -0.8475 -2.4516 42 1 -1.1093 0.3584 -4.4667 43 1 0.4406 1.8747 -5.6336 44 1 2.7289 2.1910 -4.7810 45 1 3.4672 0.9911 -2.7615 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118423003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:32 Heat of formation + Delta-G solvation = 10.576707 kcal Electronic energy + Delta-G solvation = -23491.783613 eV Core-core repulsion = 20406.301545 eV Total energy + Delta-G solvation = -3085.482068 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.26068 -38.80028 -36.14759 -34.74630 -33.51626 -32.14084 -31.81742 -30.60882 -28.53500 -26.65095 -24.81010 -23.98159 -23.24845 -22.96815 -21.63428 -20.74777 -18.54988 -18.07987 -17.32995 -16.89387 -16.51879 -16.42356 -16.06106 -15.87018 -15.53706 -15.29489 -14.96865 -14.41555 -14.28915 -14.13899 -14.04311 -13.67129 -13.51453 -13.35075 -13.03180 -12.98268 -12.84644 -12.66217 -12.43892 -12.38644 -12.26312 -12.08284 -11.83745 -11.71792 -11.38724 -11.23359 -11.10457 -10.63320 -10.53353 -9.74839 -9.54795 -9.36660 -8.67919 -8.19499 -6.30424 0.40045 0.53684 0.83173 1.40102 1.41118 1.51382 1.52147 2.40530 2.67177 2.90408 3.13901 3.65187 3.77302 3.85470 3.97053 4.09181 4.11289 4.19530 4.21248 4.31464 4.34453 4.35464 4.51941 4.60236 4.63279 4.67486 4.72994 4.80212 4.88803 4.91678 4.99118 5.02650 5.09955 5.10482 5.20547 5.25604 5.38393 5.51248 5.57807 5.64285 5.67220 5.74635 5.86287 5.97843 6.10029 6.16353 6.26673 6.86544 7.38967 8.92390 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.012902 B = 0.004423 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.744379 B = 6328.316010 C = 7900.684694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.023 4.023 3 H 0.116 0.884 4 S -0.291 6.291 5 C -0.062 4.062 6 C 0.051 3.949 7 N -0.536 5.536 8 C 0.065 3.935 9 C -0.085 4.085 10 C 0.030 3.970 11 C -0.539 4.539 12 H 0.060 0.940 13 C 0.001 3.999 14 N -0.934 5.934 15 Si 0.963 3.037 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.263 1.263 19 C 0.135 3.865 20 H 0.053 0.947 21 C -0.090 4.090 22 C -0.098 4.098 23 C -0.138 4.138 24 C -0.123 4.123 25 C -0.127 4.127 26 C -0.122 4.122 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.122 0.878 31 H 0.093 0.907 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.016 0.984 36 H 0.052 0.948 37 H 0.054 0.946 38 H -0.011 1.011 39 H -0.015 1.015 40 H 0.263 0.737 41 H 0.124 0.876 42 H 0.129 0.871 43 H 0.139 0.861 44 H 0.143 0.857 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.809 16.099 11.669 19.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.152 4.152 3 H 0.133 0.867 4 S -0.062 6.062 5 C -0.211 4.211 6 C -0.078 4.078 7 N -0.261 5.261 8 C -0.062 4.062 9 C -0.123 4.123 10 C -0.008 4.008 11 C -0.577 4.577 12 H 0.078 0.922 13 C -0.197 4.197 14 N -0.574 5.574 15 Si 0.787 3.213 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.187 1.187 19 C 0.025 3.975 20 H 0.071 0.929 21 C -0.092 4.092 22 C -0.117 4.117 23 C -0.156 4.156 24 C -0.141 4.141 25 C -0.144 4.144 26 C -0.141 4.141 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.140 0.860 31 H 0.111 0.889 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.007 0.993 39 H 0.004 0.996 40 H 0.072 0.928 41 H 0.141 0.859 42 H 0.147 0.853 43 H 0.157 0.843 44 H 0.161 0.839 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.930 16.489 12.593 20.838 hybrid contribution -0.074 -1.506 -1.741 2.303 sum 1.856 14.983 10.852 18.593 Atomic orbital electron populations 1.21976 0.92016 1.02981 1.02298 1.23181 1.00069 1.00445 0.91499 0.86652 1.86829 1.78905 1.08509 1.31995 1.23498 1.04941 0.93755 0.98889 1.22326 0.96749 0.98195 0.90548 1.61176 1.58296 1.01266 1.05316 1.22187 0.97488 0.96750 0.89742 1.21386 0.99193 0.94561 0.97159 1.18919 0.94684 0.94475 0.92724 1.21662 1.30000 1.08511 0.97554 0.92211 1.25954 0.96790 1.01577 0.95374 1.70100 1.43695 1.40902 1.02700 0.85484 0.78671 0.78837 0.78294 1.19771 1.20839 1.18702 1.20659 0.96692 0.87950 0.92174 0.92868 1.19676 0.94731 0.98373 0.96379 1.21132 0.95856 0.98288 0.96392 1.21428 1.00811 0.97382 0.96008 1.21460 0.94084 0.98434 1.00167 1.21371 0.96580 1.00142 0.96353 1.21222 0.99691 0.97030 0.96160 0.91599 0.91443 0.91994 0.85977 0.88884 0.93811 0.89201 0.90036 0.96617 0.92979 0.92744 0.99274 0.99614 0.92846 0.85852 0.85283 0.84294 0.83896 0.84955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 8.00 71.98 0.58 -2.25 16 2 C -0.02 -0.50 2.97 30.68 0.09 -0.41 16 3 H 0.12 2.29 8.14 -2.38 -0.02 2.27 16 4 S -0.29 -6.53 21.80 -56.49 -1.23 -7.76 16 5 C -0.06 -1.33 6.33 72.06 0.46 -0.87 16 6 C 0.05 1.28 5.29 86.47 0.46 1.74 16 7 N -0.54 -14.70 2.96 -876.63 -2.60 -17.29 16 8 C 0.07 2.24 4.26 86.31 0.37 2.61 16 9 C -0.09 -3.46 5.12 30.60 0.16 -3.31 16 10 C 0.03 1.57 4.97 29.85 0.15 1.72 16 11 C -0.54 -30.72 9.11 25.60 0.23 -30.48 16 12 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 13 C 0.00 0.04 5.46 84.65 0.46 0.50 16 14 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 15 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 18 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 19 C 0.13 3.29 1.86 44.34 0.08 3.38 16 20 H 0.05 1.36 7.77 -2.39 -0.02 1.34 16 21 C -0.09 -2.23 3.45 -19.87 -0.07 -2.30 16 22 C -0.10 -2.59 5.01 22.27 0.11 -2.48 16 23 C -0.14 -3.41 10.05 22.27 0.22 -3.19 16 24 C -0.12 -2.70 10.05 22.27 0.22 -2.47 16 25 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16 26 C -0.12 -2.75 9.67 22.27 0.22 -2.53 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 1.44 5.73 -2.39 -0.01 1.42 16 29 H 0.06 1.47 6.68 -2.38 -0.02 1.45 16 30 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.09 2.01 7.56 -2.39 -0.02 1.99 16 32 H 0.04 1.12 7.91 -2.39 -0.02 1.10 16 33 H 0.09 2.42 5.88 -2.39 -0.01 2.41 16 34 H 0.08 2.93 4.59 -2.38 -0.01 2.92 16 35 H 0.02 0.57 8.12 -2.39 -0.02 0.55 16 36 H 0.05 2.05 6.26 -2.39 -0.01 2.03 16 37 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 38 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 39 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 40 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 41 H 0.12 3.47 6.78 -2.91 -0.02 3.45 16 42 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 43 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 44 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 45 H 0.13 2.50 8.04 -2.91 -0.02 2.47 16 Total: -1.00 -63.51 354.96 3.40 -60.11 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.95 Total: 18.22 kcal Atomic # 6 Polarization: -46.71 SS G_CDS: 3.96 Total: -42.75 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: -2.31 Total: -74.12 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: -6.53 SS G_CDS: -1.23 Total: -7.76 kcal Total: -63.51 3.40 -60.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118423003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.691 kcal (2) G-P(sol) polarization free energy of solvation -63.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds