Wall clock time and date at job start Tue Mar 31 2020 09:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.47147 * 2 1 4 4 C 1.50699 * 109.47057 * 119.99382 * 2 1 3 5 5 H 1.08006 * 119.99940 * 120.00001 * 4 2 1 6 6 C 1.37876 * 120.00339 * 300.00783 * 4 2 1 7 7 N 1.31513 * 120.00297 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 119.99955 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.46687 * 90.00392 * 8 6 4 10 10 H 1.48498 * 109.47425 * 210.00270 * 8 6 4 11 11 H 1.48501 * 109.47409 * 330.01000 * 8 6 4 12 12 S 1.81393 * 109.47351 * 239.99931 * 2 1 3 13 13 C 1.76206 * 103.00156 * 172.12507 * 12 2 1 14 14 C 1.38728 * 120.09990 * 354.28355 * 13 12 2 15 15 C 1.38240 * 119.99250 * 179.97438 * 14 13 12 16 16 C 1.38268 * 120.20115 * 359.97438 * 15 14 13 17 17 C 1.38288 * 120.20228 * 0.02562 * 16 15 14 18 18 C 1.38646 * 120.00283 * 359.97438 * 17 16 15 19 19 N 1.40001 * 120.09930 * 180.02562 * 18 17 16 20 20 C 1.46503 * 120.00228 * 0.02562 * 19 18 17 21 21 C 1.52995 * 109.47617 * 180.02562 * 20 19 18 22 22 C 1.54275 * 110.02737 * 292.90805 * 21 20 19 23 23 C 1.54969 * 104.15332 * 217.13567 * 22 21 20 24 24 C 1.54889 * 102.78090 * 37.88780 * 23 22 21 25 25 C 1.53867 * 110.03413 * 175.68992 * 21 20 19 26 26 H 1.09000 * 109.47857 * 306.07515 * 1 2 3 27 27 H 1.09007 * 109.47195 * 66.07611 * 1 2 3 28 28 H 1.09001 * 109.47189 * 186.07441 * 1 2 3 29 29 H 0.97001 * 120.00444 * 179.97438 * 7 6 4 30 30 H 1.08005 * 119.99966 * 359.95691 * 14 13 12 31 31 H 1.08003 * 119.90017 * 180.02562 * 15 14 13 32 32 H 1.07995 * 119.89946 * 180.28160 * 16 15 14 33 33 H 1.07997 * 120.00246 * 180.02562 * 17 16 15 34 34 H 0.97000 * 120.00200 * 180.02562 * 19 18 17 35 35 H 1.09006 * 109.46499 * 299.99979 * 20 19 18 36 36 H 1.09004 * 109.46906 * 59.99235 * 20 19 18 37 37 H 1.08999 * 110.01669 * 54.29453 * 21 20 19 38 38 H 1.08997 * 110.48482 * 335.77952 * 22 21 20 39 39 H 1.09000 * 110.48383 * 98.43035 * 22 21 20 40 40 H 1.08999 * 110.72249 * 279.56860 * 23 22 21 41 41 H 1.09003 * 110.91518 * 156.29784 * 23 22 21 42 42 H 1.09001 * 110.48470 * 203.40167 * 24 23 22 43 43 H 1.09008 * 110.59642 * 80.81417 * 24 23 22 44 44 H 1.09004 * 110.03530 * 238.56554 * 25 21 20 45 45 H 1.09002 * 110.03509 * 359.94694 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 2.1370 -0.8594 3.5566 8 14 0.6256 1.2798 2.6541 9 1 -0.8023 0.8743 2.6993 10 1 0.9767 1.9955 3.9070 11 1 0.8486 2.1773 1.4921 12 16 2.1347 -0.8551 -1.4810 13 6 3.8702 -0.5548 -1.4313 14 6 4.4031 0.2884 -0.4671 15 6 5.7651 0.5221 -0.4298 16 6 6.6000 -0.0829 -1.3511 17 6 6.0776 -0.9248 -2.3158 18 6 4.7129 -1.1651 -2.3609 19 7 4.1819 -2.0176 -3.3363 20 6 5.0688 -2.6578 -4.3110 21 6 4.2417 -3.5304 -5.2571 22 6 3.6406 -4.7236 -4.4855 23 6 3.7110 -5.8998 -5.4920 24 6 5.0629 -5.6576 -6.2081 25 6 5.1452 -4.1239 -6.3520 26 1 -0.3635 0.6051 0.8306 27 1 -0.3634 0.4168 -0.9394 28 1 -0.3633 -1.0219 0.1087 29 1 1.9029 -0.5278 4.4376 30 1 3.7537 0.7625 0.2541 31 1 6.1783 1.1784 0.3217 32 1 7.6638 0.0995 -1.3147 33 1 6.7328 -1.3960 -3.0335 34 1 3.2269 -2.1844 -3.3668 35 1 5.5898 -1.8921 -4.8858 36 1 5.7969 -3.2775 -3.7875 37 1 3.4456 -2.9393 -5.7097 38 1 4.2360 -4.9437 -3.5995 39 1 2.6063 -4.5176 -4.2100 40 1 2.8843 -5.8511 -6.2006 41 1 3.7157 -6.8576 -4.9715 42 1 5.0658 -6.1336 -7.1887 43 1 5.8896 -6.0289 -5.6024 44 1 4.7872 -3.8215 -7.3362 45 1 6.1729 -3.7895 -6.2100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151929697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:40 Heat of formation + Delta-G solvation = 7.015675 kcal Electronic energy + Delta-G solvation = -22584.952185 eV Core-core repulsion = 19499.315699 eV Total energy + Delta-G solvation = -3085.636486 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.17834 -38.20021 -35.00776 -34.10822 -31.21616 -30.77770 -30.22999 -28.90047 -27.69014 -25.31002 -24.46801 -22.26998 -21.75548 -20.93486 -20.51510 -19.77541 -17.17421 -16.80910 -16.34897 -16.09883 -15.57107 -15.16521 -14.79847 -14.33130 -14.13006 -13.61618 -13.55224 -13.40320 -13.35373 -12.94602 -12.70156 -12.38507 -12.14343 -11.92783 -11.44718 -11.32368 -11.20710 -11.20068 -11.11691 -10.94370 -10.79033 -10.75282 -10.62384 -10.54636 -10.24199 -9.78068 -9.65427 -9.42211 -8.97490 -8.88250 -8.68747 -7.31805 -6.28259 -6.16435 -4.21649 1.93172 2.18048 2.60266 3.17125 3.26340 3.30025 3.48269 3.78140 4.27365 4.40691 4.42427 4.45994 4.55246 5.05985 5.10546 5.22475 5.27146 5.32880 5.42086 5.46846 5.49147 5.59477 5.63820 5.69104 5.72469 5.84990 5.86949 5.91866 6.05600 6.09119 6.13798 6.16064 6.23307 6.23960 6.27156 6.28638 6.54771 6.63807 6.74383 6.94137 7.03218 7.21085 7.39002 7.41886 7.75516 8.08306 8.29801 8.86727 9.37472 10.92622 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.018131 B = 0.003816 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.968258 B = 7336.100213 C = 8189.454813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.054 3.946 3 H 0.048 0.952 4 C -0.518 4.518 5 H 0.086 0.914 6 C 0.080 3.920 7 N -0.887 5.887 8 Si 0.879 3.121 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.266 1.266 12 S -0.171 6.171 13 C -0.126 4.126 14 C -0.062 4.062 15 C -0.164 4.164 16 C -0.090 4.090 17 C -0.195 4.195 18 C 0.223 3.777 19 N -0.746 5.746 20 C 0.137 3.863 21 C -0.104 4.104 22 C -0.121 4.121 23 C -0.125 4.125 24 C -0.125 4.125 25 C -0.116 4.116 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.266 0.734 30 H 0.140 0.860 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.402 0.598 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.777 -3.981 -17.530 18.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.075 4.075 3 H 0.066 0.934 4 C -0.556 4.556 5 H 0.104 0.896 6 C -0.125 4.125 7 N -0.524 5.524 8 Si 0.709 3.291 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.191 1.191 12 S 0.073 5.927 13 C -0.243 4.243 14 C -0.086 4.086 15 C -0.186 4.186 16 C -0.112 4.112 17 C -0.220 4.220 18 C 0.116 3.884 19 N -0.378 5.378 20 C 0.012 3.988 21 C -0.123 4.123 22 C -0.159 4.159 23 C -0.163 4.163 24 C -0.162 4.162 25 C -0.154 4.154 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.158 0.842 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.238 0.762 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.152 -4.682 -18.246 19.529 hybrid contribution -0.172 1.375 1.348 1.933 sum 4.980 -3.307 -16.898 17.924 Atomic orbital electron populations 1.21972 0.96118 1.02118 0.99475 1.21352 0.95003 0.97455 0.93671 0.93412 1.21072 1.32850 1.14101 0.87584 0.89615 1.24964 0.95378 0.96460 0.95651 1.69867 1.44674 1.39880 0.97988 0.86972 0.80993 0.83844 0.77306 1.20255 1.22054 1.19073 1.84132 0.99339 1.73062 1.36199 1.21036 0.96772 1.05185 1.01265 1.21328 0.95745 0.95590 0.95944 1.20811 0.93413 1.03644 1.00739 1.20761 0.98731 0.96772 0.94904 1.20347 0.92525 1.05756 1.03337 1.17303 0.91713 0.90510 0.88914 1.44681 1.09383 1.50988 1.32787 1.21381 0.92778 0.94866 0.89737 1.21990 0.98088 0.96590 0.95602 1.22474 1.01330 0.93950 0.98127 1.22510 0.97261 0.98427 0.98095 1.22358 0.97848 0.95713 1.00298 1.22116 0.99732 0.95411 0.98158 0.92876 0.94014 0.91796 0.92339 0.84229 0.86789 0.86954 0.86797 0.76208 0.92840 0.92587 0.90523 0.91050 0.91402 0.91659 0.91629 0.91885 0.91623 0.91676 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.59 37.15 0.32 -2.61 16 2 C 0.05 1.25 1.60 -27.89 -0.04 1.20 16 3 H 0.05 1.13 6.05 -51.92 -0.31 0.81 16 4 C -0.52 -14.00 7.49 -34.44 -0.26 -14.26 16 5 H 0.09 2.62 7.96 -52.48 -0.42 2.20 16 6 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 7 N -0.89 -26.29 13.96 55.43 0.77 -25.52 16 8 Si 0.88 20.93 24.31 -169.99 -4.13 16.79 16 9 H -0.28 -6.40 6.92 56.52 0.39 -6.01 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.27 -6.03 6.53 56.52 0.37 -5.66 16 12 S -0.17 -3.55 19.77 -107.50 -2.13 -5.68 16 13 C -0.13 -2.58 6.05 -38.92 -0.24 -2.82 16 14 C -0.06 -1.30 8.80 -39.40 -0.35 -1.64 16 15 C -0.16 -2.99 10.04 -39.57 -0.40 -3.38 16 16 C -0.09 -1.45 10.04 -39.55 -0.40 -1.85 16 17 C -0.20 -3.15 9.31 -39.41 -0.37 -3.52 16 18 C 0.22 3.98 6.66 -83.50 -0.56 3.43 16 19 N -0.75 -11.26 5.52 -58.44 -0.32 -11.58 16 20 C 0.14 1.59 3.97 -4.04 -0.02 1.58 16 21 C -0.10 -1.02 2.97 -89.50 -0.27 -1.28 16 22 C -0.12 -1.25 6.05 -25.02 -0.15 -1.40 16 23 C -0.13 -1.08 6.91 -24.69 -0.17 -1.25 16 24 C -0.12 -0.97 6.83 -25.07 -0.17 -1.14 16 25 C -0.12 -0.94 6.46 -25.62 -0.17 -1.10 16 26 H 0.05 1.15 3.46 -51.93 -0.18 0.97 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.14 3.19 5.09 -52.48 -0.27 2.92 16 31 H 0.11 1.86 8.06 -52.48 -0.42 1.43 16 32 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.11 1.54 6.74 -52.49 -0.35 1.19 16 34 H 0.40 6.22 6.88 -40.82 -0.28 5.94 16 35 H 0.05 0.59 7.95 -51.93 -0.41 0.18 16 36 H 0.06 0.66 7.84 -51.93 -0.41 0.25 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.82 7.77 -51.93 -0.40 0.42 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.51 7.67 -51.93 -0.40 0.11 16 LS Contribution 356.44 15.07 5.37 5.37 Total: -1.00 -28.96 356.44 -11.02 -39.98 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -7.26 Total: 8.56 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: -3.32 Total: -27.92 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.45 Total: -37.10 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.13 Total: 16.79 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -2.13 Total: -5.68 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.96 -11.02 -39.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151929697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.993 kcal (2) G-P(sol) polarization free energy of solvation -28.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds