Wall clock time and date at job start Tue Mar 31 2020 09:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47419 * 2 1 4 4 C 1.50706 * 109.47086 * 239.99723 * 2 1 3 5 5 H 1.07997 * 120.00192 * 242.68696 * 4 2 1 6 6 C 1.37881 * 119.99826 * 62.68672 * 4 2 1 7 7 N 1.31514 * 119.99785 * 201.47528 * 6 4 2 8 8 Si 1.86797 * 119.99958 * 21.47927 * 6 4 2 9 9 H 1.48497 * 109.47170 * 93.04351 * 8 6 4 10 10 H 1.48497 * 109.47197 * 213.04324 * 8 6 4 11 11 H 1.48498 * 109.47419 * 333.04341 * 8 6 4 12 12 S 1.81406 * 109.46983 * 120.00064 * 2 1 3 13 13 C 1.76201 * 102.99665 * 288.27151 * 12 2 1 14 14 C 1.38725 * 120.10369 * 353.33068 * 13 12 2 15 15 C 1.38246 * 119.99582 * 179.74390 * 14 13 12 16 16 C 1.38276 * 120.19089 * 0.53962 * 15 14 13 17 17 C 1.38277 * 120.20552 * 359.73810 * 16 15 14 18 18 C 1.38637 * 120.00623 * 359.97438 * 17 16 15 19 19 N 1.40009 * 120.09871 * 180.02562 * 18 17 16 20 20 C 1.46494 * 120.00102 * 359.97438 * 19 18 17 21 21 C 1.53007 * 109.47229 * 179.97438 * 20 19 18 22 22 C 1.54265 * 110.03127 * 292.91029 * 21 20 19 23 23 C 1.54961 * 104.15810 * 217.13182 * 22 21 20 24 24 C 1.54890 * 102.77807 * 37.89486 * 23 22 21 25 25 C 1.53872 * 110.03068 * 175.69443 * 21 20 19 26 26 H 1.09001 * 109.47011 * 295.34963 * 1 2 3 27 27 H 1.08998 * 109.46859 * 55.35203 * 1 2 3 28 28 H 1.09005 * 109.47109 * 175.34597 * 1 2 3 29 29 H 0.96997 * 119.99747 * 179.97438 * 7 6 4 30 30 H 1.07999 * 120.00255 * 0.02562 * 14 13 12 31 31 H 1.07993 * 119.90589 * 180.29930 * 15 14 13 32 32 H 1.08005 * 119.89498 * 179.76753 * 16 15 14 33 33 H 1.08006 * 119.99663 * 180.02562 * 17 16 15 34 34 H 0.97003 * 119.99986 * 179.97438 * 19 18 17 35 35 H 1.08997 * 109.47685 * 300.00533 * 20 19 18 36 36 H 1.09003 * 109.47048 * 60.00306 * 20 19 18 37 37 H 1.09000 * 110.01108 * 54.30412 * 21 20 19 38 38 H 1.08995 * 110.49373 * 335.78354 * 22 21 20 39 39 H 1.09004 * 110.48213 * 98.43148 * 22 21 20 40 40 H 1.08999 * 110.72575 * 279.57654 * 23 22 21 41 41 H 1.09008 * 110.92223 * 156.29733 * 23 22 21 42 42 H 1.09001 * 110.48551 * 203.40599 * 24 23 22 43 43 H 1.08995 * 110.60168 * 80.81520 * 24 23 22 44 44 H 1.09003 * 110.03100 * 238.57230 * 25 21 20 45 45 H 1.08997 * 110.03418 * 359.95553 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6169 -1.6132 -1.1320 6 6 1.7455 -0.2080 -2.4820 7 7 1.7947 -0.9958 -3.5340 8 14 1.2873 1.5917 -2.6834 9 1 2.5069 2.3817 -2.9893 10 1 0.3140 1.7331 -3.7960 11 1 0.6768 2.0909 -1.4252 12 16 2.1346 -0.8552 1.4812 13 6 1.7592 0.2802 2.7753 14 6 1.2694 1.5424 2.4731 15 6 0.9706 2.4296 3.4904 16 6 1.1690 2.0669 4.8100 17 6 1.6622 0.8129 5.1201 18 6 1.9591 -0.0855 4.1068 19 7 2.4581 -1.3559 4.4187 20 6 2.6679 -1.7374 5.8175 21 6 3.2148 -3.1650 5.8803 22 6 2.1430 -4.1632 5.3962 23 6 2.3304 -5.3963 6.3158 24 6 2.6560 -4.7544 7.6873 25 6 3.5412 -3.5407 7.3363 26 1 -0.3633 0.4400 0.9287 27 1 -0.3633 0.5843 -0.8454 28 1 -0.3633 -1.0243 -0.0834 29 1 1.5926 -0.6424 -4.4143 30 1 1.1172 1.8304 1.4434 31 1 0.5848 3.4101 3.2538 32 1 0.9374 2.7651 5.6008 33 1 1.8155 0.5330 6.1520 34 1 2.6650 -1.9835 3.7086 35 1 3.3815 -1.0539 6.2775 36 1 1.7201 -1.6879 6.3536 37 1 4.1094 -3.2492 5.2634 38 1 1.1453 -3.7424 5.5212 39 1 2.3162 -4.4335 4.3545 40 1 3.1609 -6.0122 5.9707 41 1 1.4135 -5.9831 6.3719 42 1 3.2031 -5.4563 8.3167 43 1 1.7425 -4.4291 8.1851 44 1 4.5941 -3.8082 7.4258 45 1 3.3108 -2.7058 7.9980 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151929786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:43 Heat of formation + Delta-G solvation = 3.616985 kcal Electronic energy + Delta-G solvation = -22429.876491 eV Core-core repulsion = 19344.092627 eV Total energy + Delta-G solvation = -3085.783864 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.31960 -38.33934 -35.15857 -34.05978 -31.46278 -30.88949 -30.21778 -28.94240 -27.84206 -25.26463 -24.60579 -22.45778 -21.71209 -21.01213 -20.69088 -19.84195 -17.65597 -16.64851 -16.44147 -16.27528 -15.63573 -15.12805 -14.67078 -14.43715 -14.18287 -13.68062 -13.64218 -13.58490 -13.46182 -13.04199 -12.73355 -12.35240 -12.18134 -12.02135 -11.61597 -11.39873 -11.33794 -11.23368 -11.09863 -10.98787 -10.93721 -10.80712 -10.66312 -10.48582 -10.35581 -9.85760 -9.72274 -9.66905 -9.12225 -9.00631 -8.50245 -7.51588 -6.37904 -6.29066 -4.23237 1.67698 1.92741 2.47195 3.18404 3.27604 3.30805 3.46231 3.69694 4.15763 4.28235 4.37345 4.41657 4.50817 5.00968 5.01158 5.16278 5.18607 5.23867 5.31634 5.32981 5.42070 5.45331 5.57023 5.60417 5.64225 5.69197 5.79707 5.82312 5.88483 6.00113 6.07499 6.10267 6.18586 6.22565 6.26508 6.36615 6.40505 6.48916 6.66971 6.78862 6.91476 7.12234 7.18853 7.45311 7.57983 7.94990 8.22586 8.77755 9.33263 10.82657 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016765 B = 0.003778 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.743101 B = 7409.421877 C = 8764.988853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.522 4.522 5 H 0.083 0.917 6 C 0.092 3.908 7 N -0.875 5.875 8 Si 0.861 3.139 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.257 1.257 12 S -0.144 6.144 13 C -0.142 4.142 14 C -0.091 4.091 15 C -0.162 4.162 16 C -0.092 4.092 17 C -0.189 4.189 18 C 0.226 3.774 19 N -0.744 5.744 20 C 0.136 3.864 21 C -0.105 4.105 22 C -0.121 4.121 23 C -0.126 4.126 24 C -0.124 4.124 25 C -0.116 4.116 26 H 0.033 0.967 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.268 0.732 30 H 0.126 0.874 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.404 0.596 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.120 -1.514 21.431 21.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.064 4.064 3 H 0.063 0.937 4 C -0.560 4.560 5 H 0.101 0.899 6 C -0.114 4.114 7 N -0.510 5.510 8 Si 0.687 3.313 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.181 1.181 12 S 0.102 5.898 13 C -0.259 4.259 14 C -0.116 4.116 15 C -0.184 4.184 16 C -0.114 4.114 17 C -0.213 4.213 18 C 0.118 3.882 19 N -0.376 5.376 20 C 0.012 3.988 21 C -0.124 4.124 22 C -0.159 4.159 23 C -0.163 4.163 24 C -0.162 4.162 25 C -0.154 4.154 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.144 0.856 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.241 0.759 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.679 -2.738 21.371 21.556 hybrid contribution -0.735 2.051 -0.670 2.279 sum -0.056 -0.687 20.701 20.713 Atomic orbital electron populations 1.22414 0.96677 1.02010 0.99281 1.21254 0.95104 0.97542 0.92526 0.93730 1.20290 1.36484 1.12147 0.87107 0.89942 1.24761 0.93887 0.97402 0.95348 1.69996 1.46599 1.34787 0.99616 0.87169 0.78858 0.86754 0.78563 1.20150 1.20877 1.18145 1.84974 1.76742 1.28135 0.99902 1.21528 1.09429 0.99297 0.95613 1.21136 0.98459 0.92208 0.99843 1.20770 1.05306 0.99657 0.92652 1.20755 0.98960 0.95577 0.96076 1.20423 1.08800 0.94824 0.97301 1.17298 0.93981 0.85722 0.91191 1.44760 1.72327 1.13628 1.06853 1.21407 0.99536 0.94551 0.83338 1.22002 0.99167 0.94020 0.97188 1.22471 0.98869 0.94978 0.99574 1.22511 1.01371 0.97373 0.95050 1.22356 0.99580 0.96959 0.97311 1.22116 0.99934 0.98132 0.95232 0.94802 0.92912 0.92053 0.92189 0.85604 0.86795 0.86755 0.86548 0.75878 0.92714 0.92551 0.90334 0.91188 0.91265 0.91545 0.91633 0.91843 0.91683 0.91588 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.22 37.16 0.31 -2.87 16 2 C 0.06 1.52 1.52 -27.88 -0.04 1.48 16 3 H 0.04 1.06 5.25 -51.93 -0.27 0.79 16 4 C -0.52 -14.39 8.98 -34.44 -0.31 -14.70 16 5 H 0.08 2.49 7.96 -52.49 -0.42 2.07 16 6 C 0.09 2.56 5.28 -17.82 -0.09 2.47 16 7 N -0.87 -25.72 13.96 55.43 0.77 -24.95 16 8 Si 0.86 20.45 25.97 -169.99 -4.42 16.04 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.26 -5.74 5.63 56.52 0.32 -5.43 16 12 S -0.14 -3.02 19.74 -107.50 -2.12 -5.14 16 13 C -0.14 -2.66 6.00 -38.92 -0.23 -2.90 16 14 C -0.09 -1.66 8.13 -39.40 -0.32 -1.98 16 15 C -0.16 -2.49 10.04 -39.56 -0.40 -2.89 16 16 C -0.09 -1.27 10.04 -39.55 -0.40 -1.67 16 17 C -0.19 -2.70 9.31 -39.42 -0.37 -3.07 16 18 C 0.23 3.69 6.66 -83.50 -0.56 3.14 16 19 N -0.74 -10.56 5.52 -58.45 -0.32 -10.88 16 20 C 0.14 1.47 3.97 -4.04 -0.02 1.45 16 21 C -0.10 -0.99 2.97 -89.50 -0.27 -1.25 16 22 C -0.12 -1.19 6.05 -25.03 -0.15 -1.34 16 23 C -0.13 -1.04 6.91 -24.70 -0.17 -1.21 16 24 C -0.12 -0.92 6.83 -25.07 -0.17 -1.09 16 25 C -0.12 -0.89 6.46 -25.61 -0.17 -1.06 16 26 H 0.03 0.67 6.38 -51.93 -0.33 0.34 16 27 H 0.05 1.16 5.21 -51.93 -0.27 0.89 16 28 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 29 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.13 2.41 5.06 -52.49 -0.27 2.14 16 31 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.11 1.25 8.06 -52.48 -0.42 0.82 16 33 H 0.12 1.39 6.74 -52.48 -0.35 1.03 16 34 H 0.40 6.09 6.88 -40.82 -0.28 5.81 16 35 H 0.05 0.57 7.95 -51.93 -0.41 0.15 16 36 H 0.06 0.59 7.83 -51.93 -0.41 0.18 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.74 7.77 -51.93 -0.40 0.33 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.47 7.67 -51.93 -0.40 0.07 16 LS Contribution 356.66 15.07 5.37 5.37 Total: -1.00 -28.90 356.66 -11.32 -40.22 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -7.26 Total: 6.81 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: -3.35 Total: -27.48 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.45 Total: -35.83 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.42 Total: 16.04 kcal Atomic # 16 Polarization: -3.02 SS G_CDS: -2.12 Total: -5.14 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.90 -11.32 -40.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151929786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.839 kcal (2) G-P(sol) polarization free energy of solvation -28.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds