Wall clock time and date at job start Tue Mar 31 2020 09:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47419 * 2 1 4 4 C 1.50706 * 109.47086 * 239.99723 * 2 1 3 5 5 H 1.07997 * 120.00192 * 242.68696 * 4 2 1 6 6 C 1.37881 * 119.99826 * 62.68672 * 4 2 1 7 7 N 1.31514 * 119.99785 * 201.47528 * 6 4 2 8 8 Si 1.86797 * 119.99958 * 21.47927 * 6 4 2 9 9 H 1.48497 * 109.47170 * 93.04351 * 8 6 4 10 10 H 1.48497 * 109.47197 * 213.04324 * 8 6 4 11 11 H 1.48498 * 109.47419 * 333.04341 * 8 6 4 12 12 S 1.81406 * 109.46983 * 120.00064 * 2 1 3 13 13 C 1.76201 * 102.99665 * 288.27151 * 12 2 1 14 14 C 1.38725 * 120.10369 * 353.33068 * 13 12 2 15 15 C 1.38246 * 119.99582 * 179.74390 * 14 13 12 16 16 C 1.38276 * 120.19089 * 0.53962 * 15 14 13 17 17 C 1.38277 * 120.20552 * 359.73810 * 16 15 14 18 18 C 1.38637 * 120.00623 * 359.97438 * 17 16 15 19 19 N 1.40009 * 120.09871 * 180.02562 * 18 17 16 20 20 C 1.46494 * 120.00102 * 359.97438 * 19 18 17 21 21 C 1.53007 * 109.47229 * 179.97438 * 20 19 18 22 22 C 1.54265 * 110.03127 * 292.91029 * 21 20 19 23 23 C 1.54961 * 104.15810 * 217.13182 * 22 21 20 24 24 C 1.54890 * 102.77807 * 37.89486 * 23 22 21 25 25 C 1.53872 * 110.03068 * 175.69443 * 21 20 19 26 26 H 1.09001 * 109.47011 * 295.34963 * 1 2 3 27 27 H 1.08998 * 109.46859 * 55.35203 * 1 2 3 28 28 H 1.09005 * 109.47109 * 175.34597 * 1 2 3 29 29 H 0.96997 * 119.99747 * 179.97438 * 7 6 4 30 30 H 1.07999 * 120.00255 * 0.02562 * 14 13 12 31 31 H 1.07993 * 119.90589 * 180.29930 * 15 14 13 32 32 H 1.08005 * 119.89498 * 179.76753 * 16 15 14 33 33 H 1.08006 * 119.99663 * 180.02562 * 17 16 15 34 34 H 0.97003 * 119.99986 * 179.97438 * 19 18 17 35 35 H 1.08997 * 109.47685 * 300.00533 * 20 19 18 36 36 H 1.09003 * 109.47048 * 60.00306 * 20 19 18 37 37 H 1.09000 * 110.01108 * 54.30412 * 21 20 19 38 38 H 1.08995 * 110.49373 * 335.78354 * 22 21 20 39 39 H 1.09004 * 110.48213 * 98.43148 * 22 21 20 40 40 H 1.08999 * 110.72575 * 279.57654 * 23 22 21 41 41 H 1.09008 * 110.92223 * 156.29733 * 23 22 21 42 42 H 1.09001 * 110.48551 * 203.40599 * 24 23 22 43 43 H 1.08995 * 110.60168 * 80.81520 * 24 23 22 44 44 H 1.09003 * 110.03100 * 238.57230 * 25 21 20 45 45 H 1.08997 * 110.03418 * 359.95553 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6169 -1.6132 -1.1320 6 6 1.7455 -0.2080 -2.4820 7 7 1.7947 -0.9958 -3.5340 8 14 1.2873 1.5917 -2.6834 9 1 2.5069 2.3817 -2.9893 10 1 0.3140 1.7331 -3.7960 11 1 0.6768 2.0909 -1.4252 12 16 2.1346 -0.8552 1.4812 13 6 1.7592 0.2802 2.7753 14 6 1.2694 1.5424 2.4731 15 6 0.9706 2.4296 3.4904 16 6 1.1690 2.0669 4.8100 17 6 1.6622 0.8129 5.1201 18 6 1.9591 -0.0855 4.1068 19 7 2.4581 -1.3559 4.4187 20 6 2.6679 -1.7374 5.8175 21 6 3.2148 -3.1650 5.8803 22 6 2.1430 -4.1632 5.3962 23 6 2.3304 -5.3963 6.3158 24 6 2.6560 -4.7544 7.6873 25 6 3.5412 -3.5407 7.3363 26 1 -0.3633 0.4400 0.9287 27 1 -0.3633 0.5843 -0.8454 28 1 -0.3633 -1.0243 -0.0834 29 1 1.5926 -0.6424 -4.4143 30 1 1.1172 1.8304 1.4434 31 1 0.5848 3.4101 3.2538 32 1 0.9374 2.7651 5.6008 33 1 1.8155 0.5330 6.1520 34 1 2.6650 -1.9835 3.7086 35 1 3.3815 -1.0539 6.2775 36 1 1.7201 -1.6879 6.3536 37 1 4.1094 -3.2492 5.2634 38 1 1.1453 -3.7424 5.5212 39 1 2.3162 -4.4335 4.3545 40 1 3.1609 -6.0122 5.9707 41 1 1.4135 -5.9831 6.3719 42 1 3.2031 -5.4563 8.3167 43 1 1.7425 -4.4291 8.1851 44 1 4.5941 -3.8082 7.4258 45 1 3.3108 -2.7058 7.9980 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151929786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:42 Heat of formation + Delta-G solvation = -10.642954 kcal Electronic energy + Delta-G solvation = -22430.494849 eV Core-core repulsion = 19344.092627 eV Total energy + Delta-G solvation = -3086.402222 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.37787 -39.21663 -36.39393 -35.84113 -33.39085 -31.93239 -31.44345 -29.64615 -28.83412 -27.28845 -25.53603 -23.70579 -23.34574 -22.25554 -21.48311 -20.62477 -19.25652 -18.37370 -17.52792 -17.43257 -16.81478 -16.35307 -15.85654 -15.72238 -15.39200 -15.14675 -14.97941 -14.71970 -14.51412 -14.25352 -14.17362 -13.86400 -13.67468 -13.25622 -13.02382 -12.91559 -12.45974 -12.39832 -12.05922 -11.99043 -11.92261 -11.86517 -11.79390 -11.66534 -11.53960 -11.44128 -11.34223 -10.91394 -10.78180 -10.65168 -10.38485 -8.78679 -8.44194 -7.83450 -6.43632 0.44133 0.72777 0.90366 1.28886 1.34563 1.42419 1.88444 2.26855 2.57565 2.88554 2.95386 3.65682 3.70545 3.77282 3.98778 4.25595 4.32864 4.34512 4.43205 4.50007 4.51058 4.52811 4.57534 4.58337 4.66039 4.68877 4.73500 4.82474 4.89998 4.92125 4.93534 5.04352 5.08188 5.09819 5.25212 5.29442 5.33601 5.34981 5.44536 5.46691 5.48821 5.51062 5.73103 5.99750 6.06637 6.48077 6.54520 6.73891 7.16023 8.71725 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016765 B = 0.003778 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.743101 B = 7409.421877 C = 8764.988853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.066 3.934 3 H 0.045 0.955 4 C -0.533 4.533 5 H 0.038 0.962 6 C 0.041 3.959 7 N -0.922 5.922 8 Si 0.925 3.075 9 H -0.272 1.272 10 H -0.276 1.276 11 H -0.234 1.234 12 S -0.170 6.170 13 C -0.170 4.170 14 C -0.108 4.108 15 C -0.168 4.168 16 C -0.077 4.077 17 C -0.187 4.187 18 C 0.220 3.780 19 N -0.747 5.747 20 C 0.136 3.864 21 C -0.102 4.102 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.112 4.112 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.272 0.728 30 H 0.110 0.890 31 H 0.138 0.862 32 H 0.155 0.845 33 H 0.146 0.854 34 H 0.396 0.604 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.624 0.701 24.957 24.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.063 4.063 3 H 0.063 0.937 4 C -0.571 4.571 5 H 0.056 0.944 6 C -0.162 4.162 7 N -0.559 5.559 8 Si 0.747 3.253 9 H -0.197 1.197 10 H -0.201 1.201 11 H -0.157 1.157 12 S 0.074 5.926 13 C -0.287 4.287 14 C -0.132 4.132 15 C -0.189 4.189 16 C -0.098 4.098 17 C -0.211 4.211 18 C 0.111 3.889 19 N -0.377 5.377 20 C 0.012 3.988 21 C -0.121 4.121 22 C -0.161 4.161 23 C -0.163 4.163 24 C -0.158 4.158 25 C -0.150 4.150 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.128 0.872 31 H 0.156 0.844 32 H 0.172 0.828 33 H 0.164 0.836 34 H 0.231 0.769 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.065 -0.519 24.943 24.949 hybrid contribution -0.459 1.290 -1.627 2.127 sum -0.524 0.770 23.316 23.334 Atomic orbital electron populations 1.22275 0.95362 1.01431 1.00339 1.21036 0.95983 0.97060 0.92172 0.93719 1.20446 1.36118 1.11121 0.89409 0.94397 1.25623 0.93838 1.01921 0.94771 1.70110 1.48378 1.37053 1.00365 0.86135 0.78927 0.80599 0.79596 1.19741 1.20121 1.15693 1.84893 1.77809 1.29529 1.00392 1.21460 1.12644 0.99248 0.95316 1.21156 0.99439 0.92649 0.99981 1.21063 1.05021 1.00128 0.92717 1.21238 0.96354 0.95749 0.96409 1.20812 1.07711 0.94534 0.98080 1.17559 0.93778 0.86802 0.90738 1.44984 1.71697 1.12908 1.08105 1.21602 1.00315 0.95370 0.81476 1.21975 0.98364 0.93236 0.98476 1.22452 0.98614 0.96082 0.98990 1.22516 1.01599 0.96735 0.95414 1.22354 0.99900 0.96939 0.96651 1.22107 1.00401 0.98700 0.93774 0.92659 0.92910 0.93302 0.91820 0.87238 0.84447 0.82776 0.83616 0.76891 0.91546 0.91597 0.91407 0.91961 0.93134 0.91557 0.91314 0.90642 0.91196 0.90975 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.94 8.22 71.98 0.59 -5.35 16 2 C 0.07 3.21 1.52 29.85 0.05 3.25 16 3 H 0.04 2.15 5.25 -2.39 -0.01 2.13 16 4 C -0.53 -30.78 8.98 25.60 0.23 -30.55 16 5 H 0.04 2.46 7.96 -2.91 -0.02 2.44 16 6 C 0.04 2.33 5.28 84.66 0.45 2.77 16 7 N -0.92 -56.27 13.96 21.45 0.30 -55.97 16 8 Si 0.93 42.49 25.97 68.60 1.78 44.27 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.23 -9.78 5.63 99.48 0.56 -9.22 16 12 S -0.17 -7.44 19.74 -56.49 -1.12 -8.56 16 13 C -0.17 -6.30 6.00 22.70 0.14 -6.16 16 14 C -0.11 -3.76 8.13 22.39 0.18 -3.58 16 15 C -0.17 -4.59 10.04 22.28 0.22 -4.37 16 16 C -0.08 -1.76 10.04 22.29 0.22 -1.54 16 17 C -0.19 -4.63 9.31 22.37 0.21 -4.42 16 18 C 0.22 6.84 6.66 38.24 0.25 7.09 16 19 N -0.75 -20.64 5.52 -338.83 -1.87 -22.51 16 20 C 0.14 2.64 3.97 86.38 0.34 2.99 16 21 C -0.10 -1.80 2.97 -10.07 -0.03 -1.83 16 22 C -0.12 -2.41 6.05 31.69 0.19 -2.22 16 23 C -0.13 -1.95 6.91 31.91 0.22 -1.72 16 24 C -0.12 -1.50 6.83 31.67 0.22 -1.29 16 25 C -0.11 -1.45 6.46 31.32 0.20 -1.25 16 26 H 0.05 2.17 6.38 -2.39 -0.02 2.15 16 27 H 0.05 2.28 5.21 -2.39 -0.01 2.27 16 28 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 29 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 30 H 0.11 4.10 5.06 -2.91 -0.01 4.09 16 31 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 32 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 33 H 0.15 2.74 6.74 -2.91 -0.02 2.72 16 34 H 0.40 12.23 6.88 -92.71 -0.64 11.59 16 35 H 0.07 1.17 7.95 -2.39 -0.02 1.15 16 36 H 0.07 1.19 7.83 -2.39 -0.02 1.17 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.06 1.29 7.77 -2.39 -0.02 1.28 16 39 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.08 0.85 7.67 -2.39 -0.02 0.83 16 Total: -1.00 -65.42 356.66 2.97 -62.45 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.19 Total: 28.49 kcal Atomic # 6 Polarization: -51.86 SS G_CDS: 3.69 Total: -48.18 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: -1.57 Total: -78.48 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.78 Total: 44.27 kcal Atomic # 16 Polarization: -7.44 SS G_CDS: -1.12 Total: -8.56 kcal Total: -65.42 2.97 -62.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151929786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.803 kcal (2) G-P(sol) polarization free energy of solvation -65.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds