Wall clock time and date at job start Tue Mar 31 2020 09:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47347 * 2 1 4 4 C 1.50701 * 109.46980 * 239.99904 * 2 1 3 5 5 O 1.21281 * 120.00032 * 253.83713 * 4 2 1 6 6 N 1.34769 * 120.00050 * 73.83918 * 4 2 1 7 7 C 1.46504 * 120.00109 * 4.23308 * 6 4 2 8 8 C 1.50698 * 109.47281 * 95.48001 * 7 6 4 9 9 H 1.08004 * 120.00137 * 0.02562 * 8 7 6 10 10 C 1.37873 * 119.99848 * 179.97438 * 8 7 6 11 11 N 1.31519 * 120.00012 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 120.00315 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47080 * 89.99675 * 12 10 8 14 14 H 1.48500 * 109.47247 * 210.00189 * 12 10 8 15 15 H 1.48505 * 109.47054 * 329.99806 * 12 10 8 16 16 C 1.46499 * 120.00051 * 184.23322 * 6 4 2 17 17 C 1.53000 * 109.47363 * 85.98706 * 16 6 4 18 18 C 1.52997 * 117.50003 * 243.75101 * 17 16 6 19 19 C 1.53001 * 117.50277 * 175.08636 * 17 16 6 20 20 C 1.50696 * 109.47291 * 119.99904 * 2 1 3 21 21 C 1.38271 * 119.98906 * 239.99661 * 20 2 1 22 22 C 1.38226 * 120.05267 * 179.97438 * 21 20 2 23 23 C 1.38216 * 120.02434 * 0.02562 * 22 21 20 24 24 C 1.38434 * 119.97578 * 359.97438 * 23 22 21 25 25 F 1.35106 * 120.02627 * 180.02562 * 24 23 22 26 26 C 1.38174 * 119.98749 * 59.72736 * 20 2 1 27 27 H 1.09005 * 109.46882 * 303.01819 * 1 2 3 28 28 H 1.08998 * 109.47460 * 63.01665 * 1 2 3 29 29 H 1.09002 * 109.47382 * 183.02498 * 1 2 3 30 30 H 1.08999 * 109.47172 * 215.48531 * 7 6 4 31 31 H 1.08995 * 109.47205 * 335.47791 * 7 6 4 32 32 H 0.96996 * 120.00109 * 179.97438 * 11 10 8 33 33 H 1.09000 * 109.47214 * 205.98411 * 16 6 4 34 34 H 1.08997 * 109.47345 * 325.98661 * 16 6 4 35 35 H 1.09004 * 115.54840 * 29.41099 * 17 16 6 36 36 H 1.09007 * 117.49864 * 359.97438 * 18 17 16 37 37 H 1.09005 * 117.50388 * 145.01945 * 18 17 16 38 38 H 1.08994 * 117.50012 * 214.97999 * 19 17 16 39 39 H 1.08997 * 117.49821 * 359.97438 * 19 17 16 40 40 H 1.07998 * 119.97141 * 0.02564 * 21 20 2 41 41 H 1.07999 * 119.98769 * 180.02562 * 22 21 20 42 42 H 1.08002 * 120.01239 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.01484 * 359.97438 * 26 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.5100 -1.8212 -1.1368 6 7 1.9506 -0.1114 -2.4350 7 6 1.4597 1.2652 -2.5367 8 6 2.6292 2.2154 -2.5560 9 1 3.6374 1.8322 -2.4987 10 6 2.4123 3.5738 -2.6479 11 7 3.4329 4.4032 -2.6642 12 14 0.6687 4.2366 -2.7478 13 1 0.1597 4.4991 -1.3777 14 1 0.6632 5.4998 -3.5285 15 1 -0.2031 3.2376 -3.4167 16 6 2.3526 -0.8369 -3.6426 17 6 1.1715 -1.6606 -4.1597 18 6 1.3216 -3.1832 -4.1673 19 6 1.3547 -2.4039 -5.4844 20 6 2.0323 -0.7104 1.2304 21 6 2.8273 -0.0382 2.1404 22 6 3.2884 -0.6883 3.2697 23 6 2.9555 -2.0115 3.4903 24 6 2.1597 -2.6856 2.5800 25 9 1.8333 -3.9789 2.7949 26 6 1.6937 -2.0316 1.4517 27 1 -0.3633 0.5600 0.8617 28 1 -0.3634 0.4663 -0.9158 29 1 -0.3634 -1.0262 0.0542 30 1 0.8841 1.3787 -3.4553 31 1 0.8242 1.4886 -1.6799 32 1 3.2803 5.3588 -2.7293 33 1 2.6619 -0.1251 -4.4080 34 1 3.1838 -1.5015 -3.4074 35 1 0.1838 -1.2534 -3.9434 36 1 2.2620 -3.5981 -3.8042 37 1 0.4327 -3.7777 -3.9565 38 1 0.4875 -2.4859 -6.1395 39 1 2.3165 -2.3057 -5.9878 40 1 3.0875 0.9959 1.9690 41 1 3.9089 -0.1621 3.9800 42 1 3.3156 -2.5192 4.3730 43 1 1.0688 -2.5551 0.7433 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173526071.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:11:59 Heat of formation + Delta-G solvation = -34.244913 kcal Electronic energy + Delta-G solvation = -25405.584478 eV Core-core repulsion = 21751.945623 eV Total energy + Delta-G solvation = -3653.638856 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.70929 -40.03213 -38.49988 -36.95491 -34.91783 -33.75986 -32.50390 -30.36643 -29.48801 -28.36717 -26.55831 -24.37973 -22.68706 -22.42598 -22.13627 -21.59659 -20.31682 -18.46655 -17.14510 -17.05801 -16.63713 -16.04806 -15.96731 -15.53822 -15.35991 -14.81371 -14.70307 -14.26237 -13.87559 -13.62444 -13.49501 -13.21477 -13.06238 -12.64893 -12.36726 -12.23914 -12.03891 -11.86038 -11.68262 -11.47370 -11.35753 -11.30195 -11.07814 -10.84158 -10.72279 -10.69641 -10.39789 -10.15572 -9.66456 -9.63301 -9.09537 -8.76766 -8.74200 -8.45692 -7.80491 -6.26362 -4.28438 1.32132 1.42025 3.12483 3.20633 3.22548 3.26808 3.59631 3.87330 4.11075 4.21517 4.39014 4.76490 4.89432 5.01538 5.04452 5.12140 5.15316 5.20801 5.29997 5.35870 5.48003 5.56793 5.58437 5.69059 5.79741 5.86886 6.02251 6.06659 6.08375 6.09344 6.17041 6.23589 6.24312 6.30306 6.31861 6.43450 6.45879 6.56851 6.63726 6.76554 7.07557 7.29142 7.40286 8.07282 8.37312 8.77614 8.87888 9.32690 10.86266 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.010814 B = 0.005576 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.597062 B = 5020.623412 C = 6874.218908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.078 4.078 3 H 0.120 0.880 4 C 0.526 3.474 5 O -0.556 6.556 6 N -0.585 5.585 7 C 0.201 3.799 8 C -0.543 4.543 9 H 0.078 0.922 10 C 0.077 3.923 11 N -0.890 5.890 12 Si 0.868 3.132 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.263 1.263 16 C 0.151 3.849 17 C -0.161 4.161 18 C -0.173 4.173 19 C -0.180 4.180 20 C -0.031 4.031 21 C -0.120 4.120 22 C -0.097 4.097 23 C -0.160 4.160 24 C 0.087 3.913 25 F -0.146 7.146 26 C -0.113 4.113 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.033 0.967 31 H 0.038 0.962 32 H 0.267 0.733 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.800 -9.361 5.611 12.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.099 4.099 3 H 0.138 0.862 4 C 0.314 3.686 5 O -0.436 6.436 6 N -0.315 5.315 7 C 0.080 3.920 8 C -0.581 4.581 9 H 0.096 0.904 10 C -0.126 4.126 11 N -0.527 5.527 12 Si 0.694 3.306 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.188 1.188 16 C 0.028 3.972 17 C -0.181 4.181 18 C -0.210 4.210 19 C -0.218 4.218 20 C -0.032 4.032 21 C -0.138 4.138 22 C -0.115 4.115 23 C -0.179 4.179 24 C 0.068 3.932 25 F -0.124 7.124 26 C -0.132 4.132 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.511 -9.764 5.632 12.547 hybrid contribution -0.838 0.452 -0.152 0.964 sum -6.349 -9.312 5.480 12.532 Atomic orbital electron populations 1.21843 0.92317 1.02451 1.03217 1.20333 0.97473 1.01671 0.90390 0.86213 1.20129 0.78407 0.85670 0.84423 1.90624 1.46316 1.20491 1.86149 1.47791 1.63515 1.15055 1.05107 1.19985 0.96013 0.78222 0.97776 1.21382 0.93925 0.90483 1.52307 0.90360 1.24869 0.96795 0.96736 0.94235 1.69890 1.30344 1.03270 1.49202 0.86971 0.85339 0.79290 0.78967 1.19714 1.20834 1.18799 1.20855 0.94406 0.94884 0.87082 1.22784 1.00870 0.93984 1.00441 1.22963 1.03012 0.94332 1.00702 1.22922 1.02872 1.05241 0.90745 1.19315 0.96106 0.93068 0.94701 1.21225 0.97576 1.00826 0.94146 1.20907 0.99386 0.93642 0.97597 1.21052 1.00910 0.95863 1.00081 1.17672 1.00041 0.78883 0.96587 1.91465 1.91302 1.34800 1.94881 1.20939 1.01545 0.94906 0.95764 0.91423 0.90988 0.92296 0.94951 0.94412 0.92317 0.89599 0.90739 0.88097 0.88673 0.89568 0.89194 0.88816 0.84969 0.85197 0.85303 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.67 37.15 0.32 -1.68 16 2 C -0.08 -1.31 2.04 -92.93 -0.19 -1.50 16 3 H 0.12 2.14 7.02 -51.93 -0.36 1.78 16 4 C 0.53 10.23 6.82 -10.99 -0.07 10.16 16 5 O -0.56 -11.82 14.33 5.56 0.08 -11.74 16 6 N -0.59 -11.47 2.46 -175.06 -0.43 -11.90 16 7 C 0.20 4.22 3.66 -5.19 -0.02 4.20 16 8 C -0.54 -13.79 9.93 -34.44 -0.34 -14.13 16 9 H 0.08 2.25 8.06 -52.48 -0.42 1.83 16 10 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 11 N -0.89 -25.19 13.96 55.43 0.77 -24.42 16 12 Si 0.87 19.03 27.47 -169.99 -4.67 14.36 16 13 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 14 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.26 -5.45 6.54 56.52 0.37 -5.08 16 16 C 0.15 2.71 5.70 -4.04 -0.02 2.68 16 17 C -0.16 -2.47 5.99 -90.62 -0.54 -3.01 16 18 C -0.17 -2.41 10.18 -26.69 -0.27 -2.68 16 19 C -0.18 -2.30 10.26 -26.69 -0.27 -2.57 16 20 C -0.03 -0.50 4.53 -104.64 -0.47 -0.98 16 21 C -0.12 -1.73 9.67 -39.57 -0.38 -2.11 16 22 C -0.10 -1.23 10.04 -39.59 -0.40 -1.62 16 23 C -0.16 -2.09 10.03 -39.52 -0.40 -2.49 16 24 C 0.09 1.32 7.30 -39.42 -0.29 1.03 16 25 F -0.15 -2.22 17.27 2.25 0.04 -2.19 16 26 C -0.11 -1.81 7.79 -39.51 -0.31 -2.11 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 1.03 6.16 -51.93 -0.32 0.71 16 29 H 0.06 0.79 7.27 -51.93 -0.38 0.41 16 30 H 0.03 0.68 7.17 -51.93 -0.37 0.31 16 31 H 0.04 0.75 3.90 -51.93 -0.20 0.54 16 32 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.09 1.56 8.04 -51.93 -0.42 1.14 16 34 H 0.07 1.39 7.22 -51.93 -0.38 1.01 16 35 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.09 1.40 8.03 -51.93 -0.42 0.98 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.13 1.79 7.94 -52.49 -0.42 1.37 16 41 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.13 2.17 7.16 -52.49 -0.38 1.79 16 LS Contribution 357.44 15.07 5.39 5.39 Total: -1.00 -29.04 357.44 -8.77 -37.80 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.19 Total: 7.59 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -3.76 Total: -14.90 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.34 Total: -36.32 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.08 Total: -11.74 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.67 Total: 14.36 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.04 -8.77 -37.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173526071.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.560 kcal (2) G-P(sol) polarization free energy of solvation -29.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds