Wall clock time and date at job start Tue Mar 31 2020 09:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47347 * 2 1 4 4 C 1.50701 * 109.46980 * 239.99904 * 2 1 3 5 5 O 1.21281 * 120.00032 * 253.83713 * 4 2 1 6 6 N 1.34769 * 120.00050 * 73.83918 * 4 2 1 7 7 C 1.46504 * 120.00109 * 4.23308 * 6 4 2 8 8 C 1.50698 * 109.47281 * 95.48001 * 7 6 4 9 9 H 1.08004 * 120.00137 * 0.02562 * 8 7 6 10 10 C 1.37873 * 119.99848 * 179.97438 * 8 7 6 11 11 N 1.31519 * 120.00012 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 120.00315 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47080 * 89.99675 * 12 10 8 14 14 H 1.48500 * 109.47247 * 210.00189 * 12 10 8 15 15 H 1.48505 * 109.47054 * 329.99806 * 12 10 8 16 16 C 1.46499 * 120.00051 * 184.23322 * 6 4 2 17 17 C 1.53000 * 109.47363 * 85.98706 * 16 6 4 18 18 C 1.52997 * 117.50003 * 243.75101 * 17 16 6 19 19 C 1.53001 * 117.50277 * 175.08636 * 17 16 6 20 20 C 1.50696 * 109.47291 * 119.99904 * 2 1 3 21 21 C 1.38271 * 119.98906 * 239.99661 * 20 2 1 22 22 C 1.38226 * 120.05267 * 179.97438 * 21 20 2 23 23 C 1.38216 * 120.02434 * 0.02562 * 22 21 20 24 24 C 1.38434 * 119.97578 * 359.97438 * 23 22 21 25 25 F 1.35106 * 120.02627 * 180.02562 * 24 23 22 26 26 C 1.38174 * 119.98749 * 59.72736 * 20 2 1 27 27 H 1.09005 * 109.46882 * 303.01819 * 1 2 3 28 28 H 1.08998 * 109.47460 * 63.01665 * 1 2 3 29 29 H 1.09002 * 109.47382 * 183.02498 * 1 2 3 30 30 H 1.08999 * 109.47172 * 215.48531 * 7 6 4 31 31 H 1.08995 * 109.47205 * 335.47791 * 7 6 4 32 32 H 0.96996 * 120.00109 * 179.97438 * 11 10 8 33 33 H 1.09000 * 109.47214 * 205.98411 * 16 6 4 34 34 H 1.08997 * 109.47345 * 325.98661 * 16 6 4 35 35 H 1.09004 * 115.54840 * 29.41099 * 17 16 6 36 36 H 1.09007 * 117.49864 * 359.97438 * 18 17 16 37 37 H 1.09005 * 117.50388 * 145.01945 * 18 17 16 38 38 H 1.08994 * 117.50012 * 214.97999 * 19 17 16 39 39 H 1.08997 * 117.49821 * 359.97438 * 19 17 16 40 40 H 1.07998 * 119.97141 * 0.02564 * 21 20 2 41 41 H 1.07999 * 119.98769 * 180.02562 * 22 21 20 42 42 H 1.08002 * 120.01239 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.01484 * 359.97438 * 26 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.5100 -1.8212 -1.1368 6 7 1.9506 -0.1114 -2.4350 7 6 1.4597 1.2652 -2.5367 8 6 2.6292 2.2154 -2.5560 9 1 3.6374 1.8322 -2.4987 10 6 2.4123 3.5738 -2.6479 11 7 3.4329 4.4032 -2.6642 12 14 0.6687 4.2366 -2.7478 13 1 0.1597 4.4991 -1.3777 14 1 0.6632 5.4998 -3.5285 15 1 -0.2031 3.2376 -3.4167 16 6 2.3526 -0.8369 -3.6426 17 6 1.1715 -1.6606 -4.1597 18 6 1.3216 -3.1832 -4.1673 19 6 1.3547 -2.4039 -5.4844 20 6 2.0323 -0.7104 1.2304 21 6 2.8273 -0.0382 2.1404 22 6 3.2884 -0.6883 3.2697 23 6 2.9555 -2.0115 3.4903 24 6 2.1597 -2.6856 2.5800 25 9 1.8333 -3.9789 2.7949 26 6 1.6937 -2.0316 1.4517 27 1 -0.3633 0.5600 0.8617 28 1 -0.3634 0.4663 -0.9158 29 1 -0.3634 -1.0262 0.0542 30 1 0.8841 1.3787 -3.4553 31 1 0.8242 1.4886 -1.6799 32 1 3.2803 5.3588 -2.7293 33 1 2.6619 -0.1251 -4.4080 34 1 3.1838 -1.5015 -3.4074 35 1 0.1838 -1.2534 -3.9434 36 1 2.2620 -3.5981 -3.8042 37 1 0.4327 -3.7777 -3.9565 38 1 0.4875 -2.4859 -6.1395 39 1 2.3165 -2.3057 -5.9878 40 1 3.0875 0.9959 1.9690 41 1 3.9089 -0.1621 3.9800 42 1 3.3156 -2.5192 4.3730 43 1 1.0688 -2.5551 0.7433 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173526071.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:11:58 Heat of formation + Delta-G solvation = -48.060880 kcal Electronic energy + Delta-G solvation = -25406.183583 eV Core-core repulsion = 21751.945623 eV Total energy + Delta-G solvation = -3654.237961 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.87710 -41.44065 -39.73984 -38.19070 -36.54263 -35.00704 -34.44417 -31.49329 -30.68020 -30.10587 -28.01619 -25.65815 -24.37254 -23.61945 -23.22352 -22.85235 -21.57088 -19.91272 -19.02807 -18.43151 -18.00254 -17.39543 -17.10624 -16.85894 -16.57016 -16.30112 -15.99950 -15.89346 -15.10622 -14.91091 -14.72493 -14.63587 -14.37279 -14.23281 -13.88695 -13.60817 -13.34286 -13.15503 -12.92516 -12.78120 -12.76568 -12.58641 -12.38840 -12.32022 -12.17957 -12.02610 -11.85567 -11.68182 -11.31367 -10.87550 -10.78686 -10.55416 -9.86932 -9.61833 -9.43194 -8.28512 -6.36506 0.18576 0.30101 1.41851 1.43977 1.53087 1.73857 2.20249 2.36132 2.68225 2.93876 3.05549 3.24112 3.59553 3.66606 3.83384 3.90166 4.01849 4.10740 4.12875 4.18325 4.32171 4.35696 4.39013 4.48551 4.61510 4.68197 4.75132 4.79007 4.80963 4.87776 4.89728 4.97845 5.00575 5.12467 5.17457 5.18996 5.25214 5.27074 5.37083 5.46927 5.59783 5.72152 5.96617 6.18740 6.63488 6.70534 7.24154 7.35720 8.87912 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.010814 B = 0.005576 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.597062 B = 5020.623412 C = 6874.218908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.074 4.074 3 H 0.106 0.894 4 C 0.520 3.480 5 O -0.579 6.579 6 N -0.591 5.591 7 C 0.212 3.788 8 C -0.543 4.543 9 H 0.026 0.974 10 C 0.021 3.979 11 N -0.943 5.943 12 Si 0.937 3.063 13 H -0.255 1.255 14 H -0.288 1.288 15 H -0.237 1.237 16 C 0.150 3.850 17 C -0.177 4.177 18 C -0.173 4.173 19 C -0.157 4.157 20 C -0.049 4.049 21 C -0.131 4.131 22 C -0.088 4.088 23 C -0.153 4.153 24 C 0.072 3.928 25 F -0.150 7.150 26 C -0.125 4.125 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.268 0.732 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.137 0.863 41 H 0.165 0.835 42 H 0.159 0.841 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.924 -9.634 6.433 14.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.095 4.095 3 H 0.124 0.876 4 C 0.309 3.691 5 O -0.460 6.460 6 N -0.320 5.320 7 C 0.090 3.910 8 C -0.582 4.582 9 H 0.045 0.955 10 C -0.178 4.178 11 N -0.582 5.582 12 Si 0.759 3.241 13 H -0.180 1.180 14 H -0.214 1.214 15 H -0.160 1.160 16 C 0.027 3.973 17 C -0.197 4.197 18 C -0.210 4.210 19 C -0.195 4.195 20 C -0.049 4.049 21 C -0.149 4.149 22 C -0.106 4.106 23 C -0.171 4.171 24 C 0.053 3.947 25 F -0.129 7.129 26 C -0.144 4.144 27 H 0.107 0.893 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.122 0.878 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.132 0.868 39 H 0.116 0.884 40 H 0.155 0.845 41 H 0.183 0.817 42 H 0.176 0.824 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.641 -10.068 6.452 14.191 hybrid contribution -0.005 0.479 -0.385 0.614 sum -7.646 -9.589 6.067 13.683 Atomic orbital electron populations 1.21851 0.90129 1.03266 1.04142 1.20316 0.99333 1.00344 0.89541 0.87618 1.20669 0.77855 0.85571 0.85036 1.90600 1.47280 1.21604 1.86508 1.47864 1.63535 1.14693 1.05885 1.19821 0.94392 0.77842 0.98961 1.21518 0.93194 0.91635 1.51812 0.95539 1.25780 1.01603 0.96824 0.93581 1.70058 1.33327 1.03702 1.51131 0.85875 0.79685 0.78664 0.79916 1.17968 1.21365 1.16007 1.20868 0.95413 0.94612 0.86424 1.22627 0.99513 0.94452 1.03064 1.22969 1.02989 0.93348 1.01690 1.23036 1.04124 1.02309 0.89984 1.19328 0.97355 0.93328 0.94920 1.21438 0.97444 1.01275 0.94727 1.21291 0.98592 0.93489 0.97197 1.21409 0.99465 0.95954 1.00278 1.17884 1.00864 0.78923 0.97031 1.91451 1.91452 1.35068 1.94897 1.20875 1.02224 0.95045 0.96266 0.89268 0.90986 0.91748 0.93934 0.92250 0.92266 0.90600 0.92366 0.87845 0.90040 0.88156 0.86825 0.88355 0.84532 0.81706 0.82353 0.86036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 8.67 71.98 0.62 -3.05 16 2 C -0.07 -2.50 2.04 -12.29 -0.03 -2.52 16 3 H 0.11 3.82 7.02 -2.39 -0.02 3.80 16 4 C 0.52 20.62 6.82 87.66 0.60 21.22 16 5 O -0.58 -25.34 14.33 -3.03 -0.04 -25.39 16 6 N -0.59 -23.54 2.46 -826.17 -2.04 -25.58 16 7 C 0.21 8.77 3.66 85.63 0.31 9.09 16 8 C -0.54 -28.37 9.93 25.60 0.25 -28.12 16 9 H 0.03 1.61 8.06 -2.91 -0.02 1.59 16 10 C 0.02 1.11 5.47 84.65 0.46 1.58 16 11 N -0.94 -54.97 13.96 21.45 0.30 -54.67 16 12 Si 0.94 38.27 27.47 68.60 1.88 40.16 16 13 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 14 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 15 H -0.24 -8.63 6.54 99.48 0.65 -7.98 16 16 C 0.15 5.52 5.70 86.38 0.49 6.01 16 17 C -0.18 -5.30 5.99 -10.79 -0.06 -5.37 16 18 C -0.17 -4.65 10.18 30.62 0.31 -4.34 16 19 C -0.16 -3.72 10.26 30.62 0.31 -3.40 16 20 C -0.05 -1.55 4.53 -19.87 -0.09 -1.64 16 21 C -0.13 -3.65 9.67 22.27 0.22 -3.44 16 22 C -0.09 -2.00 10.04 22.26 0.22 -1.77 16 23 C -0.15 -3.61 10.03 22.31 0.22 -3.39 16 24 C 0.07 2.11 7.30 22.38 0.16 2.27 16 25 F -0.15 -4.46 17.27 44.97 0.78 -3.69 16 26 C -0.13 -4.00 7.79 22.31 0.17 -3.83 16 27 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 28 H 0.07 1.91 6.16 -2.39 -0.01 1.90 16 29 H 0.06 1.65 7.27 -2.39 -0.02 1.64 16 30 H 0.04 1.70 7.17 -2.39 -0.02 1.69 16 31 H 0.06 2.24 3.90 -2.39 -0.01 2.23 16 32 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 33 H 0.08 2.86 8.04 -2.39 -0.02 2.84 16 34 H 0.06 2.29 7.22 -2.39 -0.02 2.27 16 35 H 0.10 3.05 8.14 -2.38 -0.02 3.03 16 36 H 0.08 2.41 8.03 -2.38 -0.02 2.39 16 37 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 38 H 0.11 2.19 8.14 -2.39 -0.02 2.18 16 39 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.14 3.62 7.94 -2.91 -0.02 3.59 16 41 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 42 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 43 H 0.12 4.06 7.16 -2.91 -0.02 4.04 16 Total: -1.00 -65.30 357.44 6.02 -59.27 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.95 Total: 30.60 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: 4.19 Total: -20.71 kcal Atomic # 7 Polarization: -78.51 SS G_CDS: -1.74 Total: -80.25 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.04 Total: -25.39 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.78 Total: -3.69 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 1.88 Total: 40.16 kcal Total: -65.30 6.02 -59.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173526071.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.214 kcal (2) G-P(sol) polarization free energy of solvation -65.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds