Wall clock time and date at job start Tue Mar 31 2020 09:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 110.06841 * 2 1 4 4 C 1.53997 * 109.91939 * 121.20585 * 2 1 3 5 5 H 1.09003 * 110.30438 * 359.20962 * 4 2 1 6 6 C 1.50700 * 110.30937 * 237.04330 * 4 2 1 7 7 C 1.38233 * 120.00418 * 299.72835 * 6 4 2 8 8 C 1.38235 * 120.00170 * 179.76618 * 7 6 4 9 9 C 1.38227 * 120.00092 * 0.50262 * 8 7 6 10 10 C 1.38244 * 119.99925 * 359.75190 * 9 8 7 11 11 C 1.38230 * 119.99660 * 359.97438 * 10 9 8 12 12 C 1.54597 * 105.14143 * 118.12800 * 4 2 1 13 13 C 1.54940 * 102.92122 * 338.04586 * 12 4 2 14 14 N 1.47906 * 109.92038 * 238.79554 * 2 1 3 15 15 C 1.46903 * 110.99377 * 26.49175 * 14 2 1 16 16 C 1.53003 * 109.46721 * 170.00244 * 15 14 2 17 17 C 1.52995 * 109.46919 * 179.97438 * 16 15 14 18 18 S 1.81005 * 109.47284 * 179.97438 * 17 16 15 19 19 C 1.76197 * 100.00308 * 180.02562 * 18 17 16 20 20 H 1.07995 * 119.99657 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99781 * 180.02562 * 19 18 17 22 22 N 1.31626 * 120.00217 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99723 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47186 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.47009 * 119.99900 * 23 21 19 26 26 H 1.48500 * 109.47382 * 239.99887 * 23 21 19 27 27 H 1.09005 * 109.47162 * 179.75231 * 1 2 3 28 28 H 1.09003 * 109.47037 * 299.75110 * 1 2 3 29 29 H 1.09004 * 109.47173 * 59.74902 * 1 2 3 30 30 H 1.08001 * 119.99805 * 359.97438 * 7 6 4 31 31 H 1.08003 * 119.99792 * 180.22873 * 8 7 6 32 32 H 1.08003 * 120.00243 * 179.72248 * 9 8 7 33 33 H 1.07995 * 120.00068 * 179.97438 * 10 9 8 34 34 H 1.07999 * 119.99825 * 179.97438 * 11 10 9 35 35 H 1.08999 * 110.72068 * 219.68783 * 12 4 2 36 36 H 1.08999 * 110.87753 * 96.47205 * 12 4 2 37 37 H 1.09004 * 110.66250 * 278.98057 * 13 12 4 38 38 H 1.08992 * 110.81060 * 155.91750 * 13 12 4 39 39 H 1.08998 * 109.47095 * 289.99610 * 15 14 2 40 40 H 1.08994 * 109.47199 * 50.00054 * 15 14 2 41 41 H 1.09000 * 109.47334 * 299.99557 * 16 15 14 42 42 H 1.09002 * 109.47247 * 59.99748 * 16 15 14 43 43 H 1.08996 * 109.47711 * 299.99855 * 17 16 15 44 44 H 1.08998 * 109.47395 * 60.00379 * 17 16 15 45 45 H 0.97004 * 119.99754 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9039 1.0238 0.0000 4 6 2.0546 -0.7501 1.2383 5 1 1.2224 -1.1028 1.8477 6 6 2.9556 0.1451 2.0493 7 6 4.1047 0.6648 1.4834 8 6 4.9287 1.4899 2.2258 9 6 4.6091 1.7869 3.5375 10 6 3.4626 1.2628 4.1051 11 6 2.6358 0.4424 3.3609 12 6 2.8536 -1.9483 0.6762 13 6 2.2661 -2.1193 -0.7473 14 7 2.0338 -0.7204 -1.1894 15 6 1.0591 -0.6702 -2.2873 16 6 1.7060 -1.2012 -3.5682 17 6 0.6907 -1.1495 -4.7115 18 16 1.4561 -1.7769 -6.2270 19 6 0.1049 -1.6074 -7.3451 20 1 -0.8374 -1.2108 -6.9971 21 6 0.2513 -1.9846 -8.6728 22 7 1.3996 -2.4685 -9.0967 23 14 -1.1814 -1.8056 -9.8580 24 1 -2.3513 -1.2407 -9.1386 25 1 -0.7960 -0.8956 -10.9666 26 1 -1.5357 -3.1374 -10.4112 27 1 -0.3634 -1.0277 -0.0044 28 1 -0.3633 0.5100 0.8922 29 1 -0.3634 0.5177 -0.8878 30 1 4.3570 0.4290 0.4601 31 1 5.8245 1.8989 1.7824 32 1 5.2552 2.4279 4.1189 33 1 3.2131 1.4945 5.1300 34 1 1.7404 0.0327 3.8045 35 1 2.6803 -2.8424 1.2750 36 1 3.9179 -1.7176 0.6290 37 1 1.3275 -2.6725 -0.7121 38 1 2.9799 -2.6167 -1.4037 39 1 0.1953 -1.2851 -2.0347 40 1 0.7389 0.3601 -2.4420 41 1 2.5698 -0.5863 -3.8209 42 1 2.0262 -2.2315 -3.4134 43 1 -0.1729 -1.7646 -4.4587 44 1 0.3701 -0.1193 -4.8665 45 1 1.5018 -2.7325 -10.0245 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177545303.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:24 Heat of formation + Delta-G solvation = -6.427050 kcal Electronic energy + Delta-G solvation = -21949.318141 eV Core-core repulsion = 18863.098735 eV Total energy + Delta-G solvation = -3086.219406 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.20208 -39.41285 -35.76654 -34.60862 -33.08303 -32.21977 -31.68850 -30.16860 -27.85375 -26.56957 -26.33660 -23.67377 -23.09255 -22.81478 -21.07179 -20.42381 -19.55909 -17.95539 -16.98003 -16.90357 -16.66946 -16.32604 -16.07028 -15.89706 -15.47751 -14.98400 -14.71016 -14.34351 -14.16024 -14.10399 -13.85646 -13.69318 -13.45342 -13.26103 -13.04382 -13.02299 -12.92030 -12.51615 -12.48242 -12.28373 -12.17895 -12.00922 -11.86400 -11.64446 -11.49823 -11.43644 -11.30996 -11.15651 -10.31675 -9.75338 -9.51441 -9.32172 -8.67105 -8.37782 -6.14079 0.49854 0.56580 1.31012 1.37910 1.49050 1.74469 2.27838 2.90259 2.96259 3.00873 3.33065 3.61890 3.70216 3.79272 4.03886 4.13416 4.19579 4.21946 4.27314 4.34402 4.37937 4.39897 4.46023 4.48672 4.53033 4.64524 4.69563 4.70956 4.73239 4.80586 4.82957 5.01449 5.04507 5.12848 5.15815 5.19568 5.23126 5.26361 5.31793 5.35277 5.39450 5.65293 5.69827 5.79208 6.02830 6.10799 6.17971 6.19238 7.04321 8.71901 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.035413 B = 0.002248 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.476919 B =12454.382493 C =12653.491471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.073 3.927 3 H 0.078 0.922 4 C -0.049 4.049 5 H 0.096 0.904 6 C -0.078 4.078 7 C -0.122 4.122 8 C -0.131 4.131 9 C -0.133 4.133 10 C -0.127 4.127 11 C -0.126 4.126 12 C -0.109 4.109 13 C 0.031 3.969 14 N -0.521 5.521 15 C 0.064 3.936 16 C -0.079 4.079 17 C -0.086 4.086 18 S -0.200 6.200 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.013 3.987 22 N -0.907 5.907 23 Si 0.996 3.004 24 H -0.263 1.263 25 H -0.271 1.271 26 H -0.271 1.271 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.118 0.882 31 H 0.130 0.870 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.045 0.955 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.714 5.914 28.352 29.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.035 4.035 3 H 0.096 0.904 4 C -0.068 4.068 5 H 0.114 0.886 6 C -0.079 4.079 7 C -0.140 4.140 8 C -0.149 4.149 9 C -0.151 4.151 10 C -0.145 4.145 11 C -0.144 4.144 12 C -0.147 4.147 13 C -0.097 4.097 14 N -0.245 5.245 15 C -0.066 4.066 16 C -0.118 4.118 17 C -0.235 4.235 18 S 0.029 5.971 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.192 4.192 22 N -0.544 5.544 23 Si 0.818 3.182 24 H -0.187 1.187 25 H -0.197 1.197 26 H -0.196 1.196 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.136 0.864 31 H 0.148 0.852 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.343 5.693 27.806 28.579 hybrid contribution -2.469 0.114 -0.734 2.578 sum 0.874 5.806 27.072 27.701 Atomic orbital electron populations 1.22431 0.95683 1.02211 1.02953 1.22524 0.93812 0.98340 0.88813 0.90404 1.21073 0.97009 0.93990 0.94742 0.88623 1.19836 0.95435 0.98076 0.94512 1.21170 0.94867 0.97827 1.00176 1.21395 1.00115 0.98401 0.95021 1.21436 0.97809 1.00442 0.95389 1.21426 0.94837 0.97457 1.00753 1.21306 1.00462 0.98962 0.93645 1.22591 0.99959 0.97730 0.94458 1.23301 1.00075 0.89858 0.96469 1.64849 1.42022 1.11614 1.06012 1.22167 0.93255 1.01024 0.90141 1.21104 0.97158 1.01487 0.92077 1.23144 1.01253 1.02219 0.96896 1.84667 1.23906 1.84354 1.04185 1.23062 0.98959 1.49521 0.96885 0.90957 1.26097 0.99793 0.93894 0.99389 1.70167 1.25848 1.41132 1.17252 0.84947 0.77487 0.78380 0.77422 1.18650 1.19659 1.19613 0.92465 0.90816 0.92285 0.86416 0.85199 0.84485 0.84206 0.84732 0.89496 0.90921 0.93397 0.90588 0.93715 0.90648 0.91976 0.92145 0.92052 0.92041 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 7.77 71.98 0.56 -2.50 16 2 C 0.07 1.44 3.18 45.06 0.14 1.58 16 3 H 0.08 1.70 7.36 -2.39 -0.02 1.68 16 4 C -0.05 -0.81 2.85 -10.66 -0.03 -0.85 16 5 H 0.10 1.34 7.47 -2.39 -0.02 1.32 16 6 C -0.08 -1.36 4.72 -19.87 -0.09 -1.45 16 7 C -0.12 -2.32 8.19 22.27 0.18 -2.14 16 8 C -0.13 -2.21 10.05 22.27 0.22 -1.98 16 9 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 10 C -0.13 -1.74 10.05 22.27 0.22 -1.52 16 11 C -0.13 -1.88 9.68 22.27 0.22 -1.66 16 12 C -0.11 -1.90 6.48 31.80 0.21 -1.69 16 13 C 0.03 0.65 5.90 86.65 0.51 1.16 16 14 N -0.52 -12.33 5.23 -858.09 -4.49 -16.82 16 15 C 0.06 1.69 3.58 86.30 0.31 2.00 16 16 C -0.08 -2.66 5.31 30.59 0.16 -2.50 16 17 C -0.09 -3.52 5.67 71.98 0.41 -3.12 16 18 S -0.20 -10.89 21.44 -56.49 -1.21 -12.10 16 19 C -0.54 -31.50 9.50 67.95 0.65 -30.86 16 20 H 0.07 4.09 7.80 -2.91 -0.02 4.07 16 21 C 0.01 0.75 5.49 84.86 0.47 1.22 16 22 N -0.91 -55.51 13.22 21.65 0.29 -55.22 16 23 Si 1.00 44.44 29.55 68.60 2.03 46.47 16 24 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 27 H 0.06 1.00 7.72 -2.38 -0.02 0.98 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 1.12 6.42 -2.39 -0.02 1.11 16 30 H 0.12 2.44 7.67 -2.91 -0.02 2.41 16 31 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 32 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 33 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 34 H 0.13 1.49 7.97 -2.91 -0.02 1.47 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.36 6.83 -2.39 -0.02 1.34 16 37 H 0.05 1.00 7.81 -2.38 -0.02 0.98 16 38 H 0.08 1.77 7.80 -2.39 -0.02 1.75 16 39 H 0.04 1.13 6.74 -2.39 -0.02 1.11 16 40 H 0.08 1.97 7.13 -2.39 -0.02 1.95 16 41 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.06 2.06 7.37 -2.39 -0.02 2.04 16 43 H 0.06 2.47 8.14 -2.40 -0.02 2.45 16 44 H 0.06 2.49 8.14 -2.40 -0.02 2.47 16 45 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -67.39 368.51 1.91 -65.48 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.94 Total: 18.20 kcal Atomic # 6 Polarization: -50.36 SS G_CDS: 4.36 Total: -46.00 kcal Atomic # 7 Polarization: -67.84 SS G_CDS: -4.20 Total: -72.05 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: -10.89 SS G_CDS: -1.21 Total: -12.10 kcal Total: -67.39 1.91 -65.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177545303.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.052 kcal (2) G-P(sol) polarization free energy of solvation -67.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds