Wall clock time and date at job start Tue Mar 31 2020 09:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.01120 * 2 1 4 4 C 1.54317 * 109.88854 * 121.12100 * 2 1 3 5 5 H 1.09007 * 110.85122 * 215.57652 * 4 2 1 6 6 C 1.50697 * 110.70547 * 338.73370 * 4 2 1 7 7 C 1.38238 * 120.00484 * 254.96965 * 6 4 2 8 8 C 1.38231 * 120.00231 * 179.78555 * 7 6 4 9 9 C 1.38238 * 119.99828 * 0.44743 * 8 7 6 10 10 C 1.38235 * 120.00126 * 359.80846 * 9 8 7 11 11 C 1.38234 * 119.99966 * 359.97438 * 10 9 8 12 12 C 1.55135 * 103.02290 * 97.11941 * 4 2 1 13 13 C 1.54911 * 101.65379 * 35.65424 * 12 4 2 14 14 N 1.47446 * 109.88772 * 238.88406 * 2 1 3 15 15 C 1.46900 * 110.99605 * 117.33708 * 14 2 1 16 16 C 1.53003 * 109.47125 * 190.71829 * 15 14 2 17 17 C 1.52997 * 109.47351 * 179.97438 * 16 15 14 18 18 S 1.80999 * 109.47230 * 179.97438 * 17 16 15 19 19 C 1.76197 * 100.00177 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99711 * 359.97438 * 19 18 17 21 21 C 1.38800 * 120.00446 * 180.02562 * 19 18 17 22 22 N 1.31635 * 119.99243 * 359.97438 * 21 19 18 23 23 Si 1.86790 * 120.00244 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47340 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47083 * 120.00046 * 23 21 19 26 26 H 1.48497 * 109.47206 * 239.99672 * 23 21 19 27 27 H 1.09007 * 109.47029 * 176.45317 * 1 2 3 28 28 H 1.09004 * 109.47204 * 296.45150 * 1 2 3 29 29 H 1.08993 * 109.47146 * 56.45095 * 1 2 3 30 30 H 1.08003 * 119.99623 * 0.02562 * 7 6 4 31 31 H 1.07997 * 120.00318 * 180.27367 * 8 7 6 32 32 H 1.08003 * 119.99868 * 179.83242 * 9 8 7 33 33 H 1.08000 * 120.00179 * 180.02562 * 10 9 8 34 34 H 1.07998 * 120.00073 * 180.02562 * 11 10 9 35 35 H 1.08994 * 110.99152 * 277.56029 * 12 4 2 36 36 H 1.09005 * 110.99165 * 153.74190 * 12 4 2 37 37 H 1.08993 * 110.37355 * 204.10429 * 13 12 4 38 38 H 1.09001 * 110.36996 * 81.75548 * 13 12 4 39 39 H 1.08998 * 109.47428 * 70.72111 * 15 14 2 40 40 H 1.09003 * 109.47388 * 310.71399 * 15 14 2 41 41 H 1.09008 * 109.46694 * 59.99909 * 16 15 14 42 42 H 1.08999 * 109.46860 * 300.00470 * 16 15 14 43 43 H 1.08998 * 109.46671 * 60.00116 * 17 16 15 44 44 H 1.08997 * 109.47208 * 300.00402 * 17 16 15 45 45 H 0.97003 * 119.99669 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0550 -0.7500 1.2423 5 1 2.9661 -0.2856 1.6197 6 6 1.0010 -0.8023 2.3180 7 6 1.1067 0.0126 3.4297 8 6 0.1376 -0.0321 4.4143 9 6 -0.9327 -0.8985 4.2917 10 6 -1.0358 -1.7172 3.1827 11 6 -0.0689 -1.6692 2.1959 12 6 2.3501 -2.1709 0.6940 13 6 2.8586 -1.8556 -0.7349 14 7 2.0316 -0.7165 -1.1870 15 6 2.8029 0.1814 -2.0569 16 6 3.0774 -0.5135 -3.3921 17 6 3.8802 0.4219 -4.2984 18 16 4.2055 -0.4005 -5.8776 19 6 5.1166 0.8642 -6.6992 20 1 5.3100 1.8019 -6.1994 21 6 5.5848 0.6559 -7.9892 22 7 5.3486 -0.4868 -8.5984 23 14 6.5501 1.9969 -8.8604 24 1 6.6777 3.1755 -7.9662 25 1 7.9019 1.4887 -9.2063 26 1 5.8376 2.3928 -10.1017 27 1 -0.3633 -1.0258 -0.0636 28 1 -0.3634 0.4578 0.9201 29 1 -0.3633 0.5679 -0.8564 30 1 1.9447 0.6871 3.5270 31 1 0.2179 0.6077 5.2806 32 1 -1.6885 -0.9354 5.0623 33 1 -1.8721 -2.3937 3.0868 34 1 -0.1496 -2.3085 1.3292 35 1 1.4422 -2.7731 0.6613 36 1 3.1230 -2.6642 1.2834 37 1 2.7105 -2.7150 -1.3886 38 1 3.9112 -1.5738 -0.7095 39 1 3.7487 0.4299 -1.5755 40 1 2.2338 1.0943 -2.2328 41 1 2.1315 -0.7619 -3.8736 42 1 3.6464 -1.4264 -3.2163 43 1 4.8260 0.6707 -3.8171 44 1 3.3108 1.3346 -4.4741 45 1 5.6761 -0.6326 -9.4998 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177545331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:30 Heat of formation + Delta-G solvation = 13.248720 kcal Electronic energy + Delta-G solvation = -21950.433998 eV Core-core repulsion = 18865.067797 eV Total energy + Delta-G solvation = -3085.366201 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.55979 -38.52558 -34.74396 -32.42163 -32.07936 -31.28864 -31.14339 -29.12009 -26.31830 -25.68186 -24.63621 -23.02355 -22.50130 -21.40033 -20.38873 -19.63262 -17.42126 -17.10294 -16.36971 -15.71180 -15.26598 -14.95958 -14.83027 -14.78652 -14.18508 -14.11206 -13.72019 -13.54931 -13.24194 -13.18369 -12.74931 -12.43935 -12.39381 -12.16028 -11.87884 -11.51176 -11.34704 -11.27486 -11.18955 -11.09885 -11.05761 -10.77536 -10.75727 -10.67947 -10.53608 -10.27461 -9.48711 -9.14024 -9.04613 -8.90303 -8.29786 -8.26004 -6.49733 -6.20838 -3.90489 1.09852 1.15600 3.22002 3.23441 3.31071 3.50676 3.56804 3.93662 4.24725 4.33735 4.42229 4.59228 4.73986 4.75106 4.87475 4.99251 5.12577 5.15066 5.18574 5.22491 5.28864 5.30803 5.39824 5.44203 5.51543 5.63378 5.67847 5.70645 5.78395 5.79315 5.86184 5.87727 5.90472 5.99416 6.01082 6.13912 6.21368 6.26253 6.28038 6.38695 6.41552 6.63993 6.74880 6.80679 7.02367 7.14820 7.62828 8.38982 9.25523 10.87406 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.044312 B = 0.002154 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.727128 B =12995.781416 C =13170.698261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.079 3.921 3 H 0.062 0.938 4 C -0.070 4.070 5 H 0.082 0.918 6 C -0.060 4.060 7 C -0.120 4.120 8 C -0.120 4.120 9 C -0.128 4.128 10 C -0.121 4.121 11 C -0.109 4.109 12 C -0.124 4.124 13 C 0.041 3.959 14 N -0.523 5.523 15 C 0.056 3.944 16 C -0.091 4.091 17 C -0.112 4.112 18 S -0.133 6.133 19 C -0.515 4.515 20 H 0.072 0.928 21 C 0.069 3.931 22 N -0.869 5.869 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.127 0.873 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.049 0.951 39 H 0.033 0.967 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.663 -1.486 26.081 28.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.030 4.030 3 H 0.080 0.920 4 C -0.090 4.090 5 H 0.100 0.900 6 C -0.061 4.061 7 C -0.138 4.138 8 C -0.138 4.138 9 C -0.146 4.146 10 C -0.139 4.139 11 C -0.127 4.127 12 C -0.161 4.161 13 C -0.086 4.086 14 N -0.247 5.247 15 C -0.073 4.073 16 C -0.130 4.130 17 C -0.262 4.262 18 S 0.095 5.905 19 C -0.663 4.663 20 H 0.090 0.910 21 C -0.139 4.139 22 N -0.505 5.505 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.145 0.855 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.067 0.933 39 H 0.051 0.949 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.342 -2.795 25.231 27.803 hybrid contribution 1.714 2.451 0.273 3.003 sum -9.628 -0.344 25.504 27.263 Atomic orbital electron populations 1.21941 0.94050 1.02300 1.00930 1.22269 0.96554 0.96407 0.87725 0.92011 1.21449 0.96564 0.97330 0.93640 0.89989 1.19609 0.95701 0.96056 0.94691 1.21046 0.99357 0.99388 0.94052 1.21104 0.94708 0.99080 0.98950 1.21128 0.98346 0.96864 0.98220 1.21150 0.99052 0.99399 0.94288 1.21174 0.93989 0.98773 0.98769 1.22887 1.01877 0.95714 0.95662 1.23085 0.95621 0.94917 0.94996 1.63519 1.36453 1.09003 1.15761 1.22388 0.95549 0.95513 0.93839 1.21224 1.00611 0.98093 0.93042 1.23234 1.00999 1.01333 1.00585 1.84633 1.71825 1.25593 1.08413 1.22737 1.39403 1.01924 1.02245 0.90970 1.25024 0.96069 0.96377 0.96441 1.70042 1.43992 1.23088 1.13407 0.86111 0.79279 0.80897 0.79220 1.19642 1.20601 1.20576 0.91875 0.92551 0.92732 0.86334 0.86313 0.86388 0.86178 0.85514 0.90174 0.90799 0.89787 0.93270 0.94897 0.91034 0.90831 0.91786 0.92462 0.92212 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 8.06 37.16 0.30 -1.08 16 2 C 0.08 0.84 3.19 -66.72 -0.21 0.63 16 3 H 0.06 0.67 7.54 -51.93 -0.39 0.28 16 4 C -0.07 -0.65 3.12 -89.95 -0.28 -0.93 16 5 H 0.08 0.73 8.04 -51.92 -0.42 0.32 16 6 C -0.06 -0.53 3.63 -104.62 -0.38 -0.91 16 7 C -0.12 -1.01 9.69 -39.58 -0.38 -1.39 16 8 C -0.12 -0.93 10.05 -39.58 -0.40 -1.32 16 9 C -0.13 -0.96 10.05 -39.58 -0.40 -1.36 16 10 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 11 C -0.11 -0.93 6.79 -39.58 -0.27 -1.20 16 12 C -0.12 -1.12 6.37 -24.59 -0.16 -1.28 16 13 C 0.04 0.46 5.82 -2.30 -0.01 0.45 16 14 N -0.52 -6.45 4.78 -223.34 -1.07 -7.52 16 15 C 0.06 0.78 4.58 -3.82 -0.02 0.76 16 16 C -0.09 -1.53 5.27 -26.73 -0.14 -1.67 16 17 C -0.11 -2.31 5.67 37.16 0.21 -2.10 16 18 S -0.13 -3.54 21.44 -107.50 -2.30 -5.84 16 19 C -0.51 -14.97 9.50 30.94 0.29 -14.68 16 20 H 0.07 2.04 7.80 -52.48 -0.41 1.63 16 21 C 0.07 2.00 5.49 -17.43 -0.10 1.91 16 22 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 23 Si 0.92 21.77 29.55 -169.99 -5.02 16.74 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H 0.06 0.64 6.24 -51.93 -0.32 0.32 16 28 H 0.06 0.55 6.60 -51.93 -0.34 0.21 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.12 0.85 8.05 -52.48 -0.42 0.43 16 31 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 32 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 33 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.13 1.03 5.30 -52.49 -0.28 0.75 16 35 H 0.08 0.71 5.93 -51.93 -0.31 0.40 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.05 0.56 7.61 -51.93 -0.40 0.17 16 39 H 0.03 0.45 7.83 -51.93 -0.41 0.04 16 40 H 0.07 0.98 8.01 -51.93 -0.42 0.57 16 41 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 42 H 0.06 1.09 7.52 -51.93 -0.39 0.70 16 43 H 0.06 1.17 8.14 -51.92 -0.42 0.74 16 44 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -31.25 365.44 -11.94 -43.19 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -7.44 Total: -1.05 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: -2.34 Total: -25.51 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: -0.33 Total: -33.04 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.30 Total: -5.84 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.25 -11.94 -43.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177545331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.438 kcal (2) G-P(sol) polarization free energy of solvation -31.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds