Wall clock time and date at job start Tue Mar 31 2020 09:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.01120 * 2 1 4 4 C 1.54317 * 109.88854 * 121.12100 * 2 1 3 5 5 H 1.09007 * 110.85122 * 215.57652 * 4 2 1 6 6 C 1.50697 * 110.70547 * 338.73370 * 4 2 1 7 7 C 1.38238 * 120.00484 * 254.96965 * 6 4 2 8 8 C 1.38231 * 120.00231 * 179.78555 * 7 6 4 9 9 C 1.38238 * 119.99828 * 0.44743 * 8 7 6 10 10 C 1.38235 * 120.00126 * 359.80846 * 9 8 7 11 11 C 1.38234 * 119.99966 * 359.97438 * 10 9 8 12 12 C 1.55135 * 103.02290 * 97.11941 * 4 2 1 13 13 C 1.54911 * 101.65379 * 35.65424 * 12 4 2 14 14 N 1.47446 * 109.88772 * 238.88406 * 2 1 3 15 15 C 1.46900 * 110.99605 * 117.33708 * 14 2 1 16 16 C 1.53003 * 109.47125 * 190.71829 * 15 14 2 17 17 C 1.52997 * 109.47351 * 179.97438 * 16 15 14 18 18 S 1.80999 * 109.47230 * 179.97438 * 17 16 15 19 19 C 1.76197 * 100.00177 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99711 * 359.97438 * 19 18 17 21 21 C 1.38800 * 120.00446 * 180.02562 * 19 18 17 22 22 N 1.31635 * 119.99243 * 359.97438 * 21 19 18 23 23 Si 1.86790 * 120.00244 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47340 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47083 * 120.00046 * 23 21 19 26 26 H 1.48497 * 109.47206 * 239.99672 * 23 21 19 27 27 H 1.09007 * 109.47029 * 176.45317 * 1 2 3 28 28 H 1.09004 * 109.47204 * 296.45150 * 1 2 3 29 29 H 1.08993 * 109.47146 * 56.45095 * 1 2 3 30 30 H 1.08003 * 119.99623 * 0.02562 * 7 6 4 31 31 H 1.07997 * 120.00318 * 180.27367 * 8 7 6 32 32 H 1.08003 * 119.99868 * 179.83242 * 9 8 7 33 33 H 1.08000 * 120.00179 * 180.02562 * 10 9 8 34 34 H 1.07998 * 120.00073 * 180.02562 * 11 10 9 35 35 H 1.08994 * 110.99152 * 277.56029 * 12 4 2 36 36 H 1.09005 * 110.99165 * 153.74190 * 12 4 2 37 37 H 1.08993 * 110.37355 * 204.10429 * 13 12 4 38 38 H 1.09001 * 110.36996 * 81.75548 * 13 12 4 39 39 H 1.08998 * 109.47428 * 70.72111 * 15 14 2 40 40 H 1.09003 * 109.47388 * 310.71399 * 15 14 2 41 41 H 1.09008 * 109.46694 * 59.99909 * 16 15 14 42 42 H 1.08999 * 109.46860 * 300.00470 * 16 15 14 43 43 H 1.08998 * 109.46671 * 60.00116 * 17 16 15 44 44 H 1.08997 * 109.47208 * 300.00402 * 17 16 15 45 45 H 0.97003 * 119.99669 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0550 -0.7500 1.2423 5 1 2.9661 -0.2856 1.6197 6 6 1.0010 -0.8023 2.3180 7 6 1.1067 0.0126 3.4297 8 6 0.1376 -0.0321 4.4143 9 6 -0.9327 -0.8985 4.2917 10 6 -1.0358 -1.7172 3.1827 11 6 -0.0689 -1.6692 2.1959 12 6 2.3501 -2.1709 0.6940 13 6 2.8586 -1.8556 -0.7349 14 7 2.0316 -0.7165 -1.1870 15 6 2.8029 0.1814 -2.0569 16 6 3.0774 -0.5135 -3.3921 17 6 3.8802 0.4219 -4.2984 18 16 4.2055 -0.4005 -5.8776 19 6 5.1166 0.8642 -6.6992 20 1 5.3100 1.8019 -6.1994 21 6 5.5848 0.6559 -7.9892 22 7 5.3486 -0.4868 -8.5984 23 14 6.5501 1.9969 -8.8604 24 1 6.6777 3.1755 -7.9662 25 1 7.9019 1.4887 -9.2063 26 1 5.8376 2.3928 -10.1017 27 1 -0.3633 -1.0258 -0.0636 28 1 -0.3634 0.4578 0.9201 29 1 -0.3633 0.5679 -0.8564 30 1 1.9447 0.6871 3.5270 31 1 0.2179 0.6077 5.2806 32 1 -1.6885 -0.9354 5.0623 33 1 -1.8721 -2.3937 3.0868 34 1 -0.1496 -2.3085 1.3292 35 1 1.4422 -2.7731 0.6613 36 1 3.1230 -2.6642 1.2834 37 1 2.7105 -2.7150 -1.3886 38 1 3.9112 -1.5738 -0.7095 39 1 3.7487 0.4299 -1.5755 40 1 2.2338 1.0943 -2.2328 41 1 2.1315 -0.7619 -3.8736 42 1 3.6464 -1.4264 -3.2163 43 1 4.8260 0.6707 -3.8171 44 1 3.3108 1.3346 -4.4741 45 1 5.6761 -0.6326 -9.4998 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177545331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:29 Heat of formation + Delta-G solvation = -2.685377 kcal Electronic energy + Delta-G solvation = -21951.124952 eV Core-core repulsion = 18865.067797 eV Total energy + Delta-G solvation = -3086.057155 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.30041 -39.27717 -35.85791 -34.60949 -33.10236 -32.06132 -31.79155 -30.01838 -27.84432 -27.10493 -25.94171 -23.73224 -23.14580 -22.54470 -21.39828 -20.41087 -19.53288 -17.71188 -17.31178 -16.90534 -16.51203 -16.37227 -16.04104 -15.70485 -15.56059 -15.01594 -14.85696 -14.44959 -14.30857 -14.10835 -13.96062 -13.51668 -13.41280 -13.16486 -13.00617 -12.97999 -12.89736 -12.54908 -12.43653 -12.33284 -12.08601 -12.00180 -11.84712 -11.65559 -11.53401 -11.38929 -11.24585 -11.15875 -10.32012 -9.72762 -9.55971 -9.22360 -8.67228 -8.38013 -6.14266 0.50088 0.57195 1.30905 1.37800 1.48924 1.74024 2.27602 2.90620 2.92976 2.96016 3.32561 3.60221 3.67478 3.82610 3.99471 4.12560 4.19502 4.23422 4.30381 4.33056 4.34089 4.36730 4.44851 4.47377 4.54507 4.67183 4.72833 4.76521 4.79352 4.82637 4.88394 5.01944 5.07234 5.07777 5.15604 5.21887 5.24134 5.27114 5.32194 5.39247 5.43344 5.65217 5.70273 5.78695 6.07271 6.14381 6.17774 6.18720 7.04094 8.71681 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.044312 B = 0.002154 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.727128 B =12995.781416 C =13170.698261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.078 3.922 3 H 0.060 0.940 4 C -0.063 4.063 5 H 0.086 0.914 6 C -0.070 4.070 7 C -0.131 4.131 8 C -0.127 4.127 9 C -0.133 4.133 10 C -0.129 4.129 11 C -0.118 4.118 12 C -0.116 4.116 13 C 0.038 3.962 14 N -0.533 5.533 15 C 0.068 3.932 16 C -0.078 4.078 17 C -0.087 4.087 18 S -0.198 6.198 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.013 3.987 22 N -0.907 5.907 23 Si 0.996 3.004 24 H -0.263 1.263 25 H -0.271 1.271 26 H -0.271 1.271 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.044 0.956 30 H 0.127 0.873 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.127 0.873 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.046 0.954 39 H 0.039 0.961 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.735 -0.492 27.719 29.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.030 4.030 3 H 0.079 0.921 4 C -0.082 4.082 5 H 0.104 0.896 6 C -0.070 4.070 7 C -0.149 4.149 8 C -0.145 4.145 9 C -0.150 4.150 10 C -0.147 4.147 11 C -0.136 4.136 12 C -0.154 4.154 13 C -0.089 4.089 14 N -0.257 5.257 15 C -0.062 4.062 16 C -0.117 4.117 17 C -0.236 4.236 18 S 0.030 5.970 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.192 4.192 22 N -0.544 5.544 23 Si 0.818 3.182 24 H -0.187 1.187 25 H -0.196 1.196 26 H -0.196 1.196 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.145 0.855 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.144 0.856 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.424 -1.808 26.884 29.267 hybrid contribution 1.664 2.106 -0.142 2.688 sum -9.760 0.298 26.742 28.469 Atomic orbital electron populations 1.21866 0.93792 1.02110 1.00676 1.22295 0.96657 0.96355 0.87713 0.92144 1.21365 0.96837 0.96937 0.93109 0.89613 1.19598 0.95822 0.96740 0.94884 1.21240 0.99965 0.99527 0.94131 1.21380 0.94488 0.99279 0.99354 1.21428 0.98697 0.96402 0.98520 1.21398 0.99334 0.99727 0.94215 1.21249 0.94277 0.98930 0.99115 1.22850 1.02278 0.95928 0.94337 1.23113 0.95394 0.94242 0.96199 1.63460 1.36382 1.09175 1.16685 1.22175 0.96189 0.95390 0.92437 1.21088 0.99279 0.97429 0.93868 1.23152 1.01715 1.01404 0.97350 1.84654 1.72029 1.27514 1.12762 1.23069 1.40065 1.02245 1.03119 0.90975 1.26099 0.96935 0.98999 0.97134 1.70170 1.44998 1.25233 1.13974 0.84942 0.77725 0.77637 0.77915 1.18675 1.19607 1.19646 0.91932 0.92055 0.93729 0.85501 0.84591 0.84531 0.84739 0.85568 0.89879 0.89632 0.90482 0.93549 0.94319 0.90753 0.91819 0.92037 0.92102 0.92015 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.06 71.98 0.58 -1.90 16 2 C 0.08 1.56 3.19 45.26 0.14 1.71 16 3 H 0.06 1.24 7.54 -2.39 -0.02 1.22 16 4 C -0.06 -1.07 3.12 -10.36 -0.03 -1.10 16 5 H 0.09 1.39 8.04 -2.38 -0.02 1.37 16 6 C -0.07 -1.13 3.63 -19.86 -0.07 -1.21 16 7 C -0.13 -1.96 9.69 22.27 0.22 -1.75 16 8 C -0.13 -1.69 10.05 22.27 0.22 -1.47 16 9 C -0.13 -1.71 10.05 22.27 0.22 -1.49 16 10 C -0.13 -1.79 10.05 22.27 0.22 -1.56 16 11 C -0.12 -1.84 6.79 22.27 0.15 -1.69 16 12 C -0.12 -1.96 6.37 31.98 0.20 -1.75 16 13 C 0.04 0.81 5.82 86.77 0.50 1.32 16 14 N -0.53 -12.67 4.78 -860.53 -4.12 -16.79 16 15 C 0.07 1.81 4.58 86.30 0.40 2.21 16 16 C -0.08 -2.60 5.27 30.59 0.16 -2.44 16 17 C -0.09 -3.57 5.67 71.98 0.41 -3.16 16 18 S -0.20 -10.80 21.44 -56.49 -1.21 -12.01 16 19 C -0.54 -31.56 9.50 67.95 0.65 -30.92 16 20 H 0.07 4.09 7.80 -2.91 -0.02 4.07 16 21 C 0.01 0.76 5.49 84.86 0.47 1.22 16 22 N -0.91 -55.45 13.22 21.65 0.29 -55.17 16 23 Si 1.00 44.46 29.55 68.60 2.03 46.48 16 24 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 27 H 0.06 1.22 6.24 -2.38 -0.01 1.20 16 28 H 0.06 1.13 6.60 -2.38 -0.02 1.12 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.13 1.61 8.05 -2.91 -0.02 1.58 16 31 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 32 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 33 H 0.13 1.38 8.06 -2.91 -0.02 1.36 16 34 H 0.13 1.92 5.30 -2.91 -0.02 1.90 16 35 H 0.08 1.36 5.93 -2.39 -0.01 1.35 16 36 H 0.09 1.25 8.14 -2.38 -0.02 1.24 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.73 16 38 H 0.05 1.02 7.61 -2.39 -0.02 1.00 16 39 H 0.04 1.00 7.83 -2.39 -0.02 0.98 16 40 H 0.07 1.95 8.01 -2.39 -0.02 1.93 16 41 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 42 H 0.06 2.09 7.52 -2.39 -0.02 2.07 16 43 H 0.06 2.46 8.14 -2.40 -0.02 2.44 16 44 H 0.06 2.51 8.14 -2.40 -0.02 2.49 16 45 H 0.27 15.32 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -67.05 365.44 2.37 -64.67 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.95 Total: 16.78 kcal Atomic # 6 Polarization: -48.42 SS G_CDS: 4.44 Total: -43.98 kcal Atomic # 7 Polarization: -68.12 SS G_CDS: -3.83 Total: -71.95 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: -10.80 SS G_CDS: -1.21 Total: -12.01 kcal Total: -67.05 2.37 -64.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177545331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.986 kcal (2) G-P(sol) polarization free energy of solvation -67.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds