Wall clock time and date at job start Tue Mar 31 2020 08:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46832 * 2 1 4 4 H 1.09001 * 109.46840 * 304.99454 * 3 2 1 5 5 C 1.50699 * 109.46946 * 184.99890 * 3 2 1 6 6 H 1.08004 * 120.00129 * 239.99125 * 5 3 2 7 7 C 1.37875 * 120.00353 * 59.99774 * 5 3 2 8 8 N 1.31519 * 119.99864 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00136 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47210 * 60.00043 * 9 7 5 11 11 H 1.48505 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47171 * 299.99733 * 9 7 5 13 13 N 1.46494 * 109.47553 * 64.99565 * 3 2 1 14 14 C 1.34774 * 120.00086 * 275.00115 * 13 3 2 15 15 O 1.21283 * 120.00206 * 4.31146 * 14 13 3 16 16 C 1.50704 * 120.00338 * 184.31357 * 14 13 3 17 17 C 1.50707 * 112.84588 * 316.10776 * 16 14 13 18 18 C 1.38267 * 119.98620 * 103.71078 * 17 16 14 19 19 C 1.38218 * 120.04779 * 179.97438 * 18 17 16 20 20 C 1.38219 * 120.02946 * 359.97438 * 19 18 17 21 21 C 1.38434 * 119.97261 * 359.97438 * 20 19 18 22 22 F 1.35102 * 120.02733 * 180.02562 * 21 20 19 23 23 C 1.38176 * 119.98557 * 283.43080 * 17 16 14 24 24 C 1.53774 * 113.61880 * 184.90972 * 16 14 13 25 25 C 1.53785 * 87.08088 * 270.79773 * 24 16 14 26 26 C 1.53779 * 87.17295 * 334.52576 * 25 24 16 27 27 H 1.09000 * 109.47359 * 300.00589 * 1 2 3 28 28 H 1.09005 * 109.46829 * 60.00619 * 1 2 3 29 29 H 1.08999 * 109.47082 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47194 * 239.99863 * 2 1 3 31 31 H 1.09005 * 109.46829 * 119.99381 * 2 1 3 32 32 H 0.97002 * 119.99844 * 180.02562 * 8 7 5 33 33 H 0.97006 * 120.00139 * 94.99728 * 13 3 2 34 34 H 1.08002 * 119.97647 * 0.02562 * 18 17 16 35 35 H 1.08009 * 119.98825 * 179.97438 * 19 18 17 36 36 H 1.07996 * 120.01296 * 180.02562 * 20 19 18 37 37 H 1.08001 * 120.00861 * 0.02562 * 23 17 16 38 38 H 1.08998 * 113.61426 * 156.25162 * 24 16 14 39 39 H 1.09005 * 113.68916 * 25.35748 * 24 16 14 40 40 H 1.09005 * 113.61000 * 89.11798 * 25 24 16 41 41 H 1.08997 * 113.61408 * 219.92846 * 25 24 16 42 42 H 1.08996 * 113.61271 * 140.02187 * 26 25 24 43 43 H 1.08994 * 113.60921 * 270.92540 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8891 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8801 -1.3809 10 1 6.5966 0.1454 -0.2340 11 1 6.3979 0.2168 -2.6502 12 1 6.5004 2.2800 -1.3807 13 7 1.6523 2.0976 1.2517 14 6 0.4350 2.6644 1.3667 15 8 -0.3682 2.5648 0.4635 16 6 0.0718 3.4223 2.6177 17 6 0.4949 2.7102 3.8768 18 6 1.6066 3.1435 4.5754 19 6 1.9955 2.4917 5.7306 20 6 1.2730 1.4062 6.1890 21 6 0.1591 0.9722 5.4909 22 9 -0.5482 -0.0884 5.9382 23 6 -0.2317 1.6282 4.3356 24 6 -1.3881 3.9047 2.6438 25 6 -0.8947 5.1854 1.9499 26 6 0.4793 4.9075 2.5820 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8294 -0.0611 -2.9498 33 1 2.2718 2.1233 1.9977 34 1 2.1711 3.9924 4.2187 35 1 2.8643 2.8308 6.2754 36 1 1.5768 0.8974 7.0918 37 1 -1.1024 1.2925 3.7919 38 1 -1.7741 4.0738 3.6490 39 1 -2.0586 3.3051 2.0281 40 1 -0.8960 5.1205 0.8618 41 1 -1.3702 6.0935 2.3203 42 1 1.3165 5.1161 1.9159 43 1 0.6028 5.3502 3.5703 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183888883.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:24 Heat of formation + Delta-G solvation = -46.827226 kcal Electronic energy + Delta-G solvation = -25920.031891 eV Core-core repulsion = 22265.847425 eV Total energy + Delta-G solvation = -3654.184466 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.88560 -40.78672 -38.50549 -37.10060 -34.86898 -32.45751 -31.46079 -30.85943 -30.41615 -27.25441 -25.90721 -25.65912 -23.13167 -22.56439 -22.03301 -21.27194 -19.48787 -18.84716 -17.81507 -16.69580 -16.25701 -16.12993 -15.67444 -15.56247 -15.41082 -15.10034 -14.62213 -14.15696 -13.99937 -13.73333 -13.33922 -12.98533 -12.67874 -12.50381 -12.37223 -12.03165 -11.89449 -11.59614 -11.51342 -11.34052 -11.24684 -11.00695 -10.86249 -10.78045 -10.43656 -10.32517 -10.22323 -10.11900 -9.59707 -9.30638 -9.04942 -8.84788 -8.56644 -8.47989 -7.80597 -6.12591 -4.22095 1.10014 1.16505 3.24474 3.27071 3.30225 3.31364 3.50860 4.01003 4.15836 4.35973 4.54861 4.64285 4.69392 4.84147 4.96148 4.98811 5.14022 5.18418 5.26727 5.35516 5.66413 5.69065 5.79113 5.81329 5.97844 6.00728 6.05642 6.15007 6.18762 6.27129 6.42233 6.43719 6.49774 6.51387 6.69473 6.83973 7.07694 7.21056 7.38364 7.46330 7.62390 7.74201 7.90091 8.18619 8.67608 8.76834 9.12498 9.45285 10.92657 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.012942 B = 0.005005 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.060889 B = 5593.555754 C = 6131.256208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.700 5.700 14 C 0.529 3.471 15 O -0.539 6.539 16 C -0.074 4.074 17 C -0.032 4.032 18 C -0.125 4.125 19 C -0.088 4.088 20 C -0.159 4.159 21 C 0.100 3.900 22 F -0.142 7.142 23 C -0.141 4.141 24 C -0.112 4.112 25 C -0.137 4.137 26 C -0.120 4.120 27 H 0.040 0.960 28 H 0.049 0.951 29 H 0.020 0.980 30 H 0.098 0.902 31 H 0.030 0.970 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.886 6.658 15.069 17.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.347 5.347 14 C 0.313 3.687 15 O -0.418 6.418 16 C -0.078 4.078 17 C -0.032 4.032 18 C -0.143 4.143 19 C -0.106 4.106 20 C -0.178 4.178 21 C 0.081 3.919 22 F -0.120 7.120 23 C -0.159 4.159 24 C -0.150 4.150 25 C -0.174 4.174 26 C -0.158 4.158 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.039 0.961 30 H 0.116 0.884 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.220 0.780 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.443 6.431 14.198 16.510 hybrid contribution 1.270 -0.424 0.398 1.397 sum -4.173 6.007 14.596 16.326 Atomic orbital electron populations 1.21860 0.98270 0.97881 1.01355 1.21927 0.92693 0.99804 1.02170 1.18783 0.94137 0.89236 0.80776 0.93438 1.21186 0.90718 1.39133 1.06239 0.92212 1.24872 0.98529 0.94790 0.95387 1.69887 1.35197 1.37512 1.09336 0.86536 0.84959 0.78308 0.77473 1.20168 1.21114 1.20183 1.46442 1.14497 1.55340 1.18395 1.19391 0.83006 0.79544 0.86791 1.90667 1.49530 1.60726 1.40875 1.21186 0.99638 0.95317 0.91650 1.19382 0.94484 0.94466 0.94903 1.21152 0.96661 1.01029 0.95446 1.20970 0.99009 0.94542 0.96044 1.21115 0.95743 0.99359 1.01575 1.17658 0.92579 0.86596 0.95061 1.91494 1.77616 1.54064 1.88853 1.20982 1.02183 0.96838 0.95941 1.22813 0.93851 0.97343 1.00954 1.22796 0.95910 0.97414 1.01268 1.22990 0.98790 0.92220 1.01787 0.94054 0.93195 0.96075 0.88361 0.95165 0.92507 0.77989 0.84947 0.84946 0.84979 0.84824 0.89878 0.89829 0.89224 0.91390 0.90505 0.89183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.47 37.16 0.31 -2.78 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.79 2.24 -69.09 -0.15 6.63 16 4 H 0.05 1.37 7.64 -51.93 -0.40 0.97 16 5 C -0.53 -13.99 8.73 -34.44 -0.30 -14.29 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.61 11.30 55.43 0.63 -23.99 16 9 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 N -0.70 -14.38 4.93 -54.93 -0.27 -14.66 16 14 C 0.53 10.11 5.46 -10.98 -0.06 10.05 16 15 O -0.54 -12.00 12.38 5.55 0.07 -11.93 16 16 C -0.07 -1.06 1.00 -155.85 -0.16 -1.22 16 17 C -0.03 -0.42 4.13 -104.63 -0.43 -0.85 16 18 C -0.12 -1.40 8.89 -39.58 -0.35 -1.75 16 19 C -0.09 -0.89 10.04 -39.60 -0.40 -1.29 16 20 C -0.16 -1.77 10.03 -39.52 -0.40 -2.16 16 21 C 0.10 1.32 7.30 -39.42 -0.29 1.03 16 22 F -0.14 -1.97 17.27 2.25 0.04 -1.93 16 23 C -0.14 -1.94 9.37 -39.51 -0.37 -2.31 16 24 C -0.11 -1.45 6.66 -25.92 -0.17 -1.62 16 25 C -0.14 -1.68 7.70 -25.92 -0.20 -1.88 16 26 C -0.12 -1.45 6.22 -25.78 -0.16 -1.61 16 27 H 0.04 0.91 5.55 -51.93 -0.29 0.62 16 28 H 0.05 1.19 7.80 -51.93 -0.41 0.79 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.10 2.66 5.95 -51.93 -0.31 2.36 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.39 7.29 7.81 -40.82 -0.32 6.97 16 34 H 0.13 1.28 6.98 -52.49 -0.37 0.92 16 35 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 36 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.13 1.88 8.04 -52.49 -0.42 1.45 16 38 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 39 H 0.08 1.22 7.50 -51.93 -0.39 0.83 16 40 H 0.09 1.30 7.89 -51.93 -0.41 0.89 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 43 H 0.09 0.87 7.40 -51.93 -0.38 0.48 16 LS Contribution 349.06 15.07 5.26 5.26 Total: -1.00 -29.21 349.06 -8.85 -38.06 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -6.19 Total: 9.32 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -3.37 Total: -15.61 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.36 Total: -38.64 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.07 Total: -11.93 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.21 -8.85 -38.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183888883.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.768 kcal (2) G-P(sol) polarization free energy of solvation -29.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds