Wall clock time and date at job start Tue Mar 31 2020 08:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46832 * 2 1 4 4 H 1.09001 * 109.46840 * 304.99454 * 3 2 1 5 5 C 1.50699 * 109.46946 * 184.99890 * 3 2 1 6 6 H 1.08004 * 120.00129 * 239.99125 * 5 3 2 7 7 C 1.37875 * 120.00353 * 59.99774 * 5 3 2 8 8 N 1.31519 * 119.99864 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00136 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47210 * 60.00043 * 9 7 5 11 11 H 1.48505 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47171 * 299.99733 * 9 7 5 13 13 N 1.46494 * 109.47553 * 64.99565 * 3 2 1 14 14 C 1.34774 * 120.00086 * 275.00115 * 13 3 2 15 15 O 1.21283 * 120.00206 * 4.31146 * 14 13 3 16 16 C 1.50704 * 120.00338 * 184.31357 * 14 13 3 17 17 C 1.50707 * 112.84588 * 316.10776 * 16 14 13 18 18 C 1.38267 * 119.98620 * 103.71078 * 17 16 14 19 19 C 1.38218 * 120.04779 * 179.97438 * 18 17 16 20 20 C 1.38219 * 120.02946 * 359.97438 * 19 18 17 21 21 C 1.38434 * 119.97261 * 359.97438 * 20 19 18 22 22 F 1.35102 * 120.02733 * 180.02562 * 21 20 19 23 23 C 1.38176 * 119.98557 * 283.43080 * 17 16 14 24 24 C 1.53774 * 113.61880 * 184.90972 * 16 14 13 25 25 C 1.53785 * 87.08088 * 270.79773 * 24 16 14 26 26 C 1.53779 * 87.17295 * 334.52576 * 25 24 16 27 27 H 1.09000 * 109.47359 * 300.00589 * 1 2 3 28 28 H 1.09005 * 109.46829 * 60.00619 * 1 2 3 29 29 H 1.08999 * 109.47082 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47194 * 239.99863 * 2 1 3 31 31 H 1.09005 * 109.46829 * 119.99381 * 2 1 3 32 32 H 0.97002 * 119.99844 * 180.02562 * 8 7 5 33 33 H 0.97006 * 120.00139 * 94.99728 * 13 3 2 34 34 H 1.08002 * 119.97647 * 0.02562 * 18 17 16 35 35 H 1.08009 * 119.98825 * 179.97438 * 19 18 17 36 36 H 1.07996 * 120.01296 * 180.02562 * 20 19 18 37 37 H 1.08001 * 120.00861 * 0.02562 * 23 17 16 38 38 H 1.08998 * 113.61426 * 156.25162 * 24 16 14 39 39 H 1.09005 * 113.68916 * 25.35748 * 24 16 14 40 40 H 1.09005 * 113.61000 * 89.11798 * 25 24 16 41 41 H 1.08997 * 113.61408 * 219.92846 * 25 24 16 42 42 H 1.08996 * 113.61271 * 140.02187 * 26 25 24 43 43 H 1.08994 * 113.60921 * 270.92540 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8891 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8801 -1.3809 10 1 6.5966 0.1454 -0.2340 11 1 6.3979 0.2168 -2.6502 12 1 6.5004 2.2800 -1.3807 13 7 1.6523 2.0976 1.2517 14 6 0.4350 2.6644 1.3667 15 8 -0.3682 2.5648 0.4635 16 6 0.0718 3.4223 2.6177 17 6 0.4949 2.7102 3.8768 18 6 1.6066 3.1435 4.5754 19 6 1.9955 2.4917 5.7306 20 6 1.2730 1.4062 6.1890 21 6 0.1591 0.9722 5.4909 22 9 -0.5482 -0.0884 5.9382 23 6 -0.2317 1.6282 4.3356 24 6 -1.3881 3.9047 2.6438 25 6 -0.8947 5.1854 1.9499 26 6 0.4793 4.9075 2.5820 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8294 -0.0611 -2.9498 33 1 2.2718 2.1233 1.9977 34 1 2.1711 3.9924 4.2187 35 1 2.8643 2.8308 6.2754 36 1 1.5768 0.8974 7.0918 37 1 -1.1024 1.2925 3.7919 38 1 -1.7741 4.0738 3.6490 39 1 -2.0586 3.3051 2.0281 40 1 -0.8960 5.1205 0.8618 41 1 -1.3702 6.0935 2.3203 42 1 1.3165 5.1161 1.9159 43 1 0.6028 5.3502 3.5703 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183888883.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:24 Heat of formation + Delta-G solvation = -62.326126 kcal Electronic energy + Delta-G solvation = -25920.703974 eV Core-core repulsion = 22265.847425 eV Total energy + Delta-G solvation = -3654.856548 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.89710 -42.00872 -39.72711 -38.37737 -36.67508 -34.32015 -32.94343 -32.19434 -31.41115 -29.11252 -27.12906 -26.71689 -25.00670 -23.60070 -23.11943 -22.58468 -21.33092 -20.32660 -18.95434 -18.19642 -17.45156 -17.27373 -17.09572 -16.79991 -16.58982 -16.42198 -16.28475 -15.65571 -15.36022 -14.72101 -14.61530 -14.42461 -14.32981 -13.83937 -13.52689 -13.38036 -13.22395 -13.17924 -12.91384 -12.80009 -12.66901 -12.60744 -12.39857 -12.22746 -12.09813 -11.84652 -11.61842 -11.35506 -11.28251 -11.07888 -10.68105 -10.52202 -9.86044 -9.62363 -9.57934 -8.16119 -6.33700 0.17773 0.25388 1.44512 1.46308 1.54044 1.79310 2.34127 2.52725 2.71852 3.13156 3.17625 3.57574 3.59420 3.66409 3.86978 3.93022 4.03408 4.13724 4.27861 4.45206 4.47137 4.52873 4.54490 4.73800 4.77608 4.81450 4.90882 5.02927 5.04111 5.06410 5.12736 5.14286 5.20403 5.23352 5.38898 5.41763 5.48078 5.52746 5.55735 5.62709 5.77243 5.91995 5.95045 6.15546 6.73893 6.99513 7.33255 7.57464 8.89138 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.012942 B = 0.005005 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.060889 B = 5593.555754 C = 6131.256208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.282 3.718 4 H -0.002 1.002 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.265 1.265 11 H -0.287 1.287 12 H -0.268 1.268 13 N -0.699 5.699 14 C 0.525 3.475 15 O -0.578 6.578 16 C -0.074 4.074 17 C -0.043 4.043 18 C -0.121 4.121 19 C -0.078 4.078 20 C -0.154 4.154 21 C 0.079 3.921 22 F -0.152 7.152 23 C -0.157 4.157 24 C -0.108 4.108 25 C -0.136 4.136 26 C -0.107 4.107 27 H 0.043 0.957 28 H 0.027 0.973 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.034 0.966 32 H 0.265 0.735 33 H 0.399 0.601 34 H 0.154 0.846 35 H 0.169 0.831 36 H 0.155 0.845 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.098 0.902 42 H 0.066 0.934 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.015 8.028 18.044 19.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.178 3.822 4 H 0.016 0.984 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.190 1.190 11 H -0.213 1.213 12 H -0.193 1.193 13 N -0.346 5.346 14 C 0.311 3.689 15 O -0.459 6.459 16 C -0.077 4.077 17 C -0.043 4.043 18 C -0.139 4.139 19 C -0.096 4.096 20 C -0.172 4.172 21 C 0.060 3.940 22 F -0.131 7.131 23 C -0.176 4.176 24 C -0.146 4.146 25 C -0.174 4.174 26 C -0.144 4.144 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.233 0.767 34 H 0.171 0.829 35 H 0.187 0.813 36 H 0.173 0.827 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.117 0.883 42 H 0.085 0.915 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.577 7.816 17.211 19.238 hybrid contribution 0.635 -0.854 -0.523 1.186 sum -2.942 6.962 16.688 18.320 Atomic orbital electron populations 1.21690 0.97055 0.98767 1.00382 1.21781 0.93675 0.99526 1.00920 1.18334 0.93674 0.88914 0.81241 0.98370 1.21530 0.91337 1.39036 1.06667 0.91058 1.25765 1.03296 0.94319 0.94991 1.70047 1.37162 1.38310 1.09872 0.85451 0.79129 0.78599 0.77507 1.19016 1.21274 1.19344 1.46197 1.15511 1.55657 1.17270 1.20242 0.81779 0.78763 0.88078 1.90647 1.50434 1.61866 1.42916 1.21031 1.00907 0.96168 0.89567 1.19277 0.95658 0.94714 0.94699 1.21443 0.95577 1.01449 0.95409 1.21389 0.99412 0.93363 0.95399 1.21461 0.94524 0.99388 1.01846 1.17904 0.93679 0.86848 0.95557 1.91464 1.78068 1.54621 1.88955 1.20961 1.02342 0.97729 0.96590 1.22852 0.92645 0.97105 1.01995 1.22752 0.96685 0.98452 0.99465 1.23056 0.97966 0.89930 1.03455 0.93779 0.95348 0.94128 0.90974 0.94761 0.92613 0.76696 0.82850 0.81304 0.82724 0.86483 0.87144 0.92457 0.92375 0.88317 0.91483 0.85406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.47 71.98 0.61 -5.13 16 2 C -0.12 -6.11 5.45 30.59 0.17 -5.95 16 3 C 0.28 14.55 2.24 44.25 0.10 14.65 16 4 H 0.00 -0.10 7.64 -2.39 -0.02 -0.11 16 5 C -0.55 -28.90 8.73 25.60 0.22 -28.68 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.88 5.29 84.65 0.45 1.33 16 8 N -0.92 -52.57 11.30 21.45 0.24 -52.33 16 9 Si 0.97 41.79 29.54 68.60 2.03 43.81 16 10 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 11 H -0.29 -12.36 7.11 99.48 0.71 -11.66 16 12 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 13 N -0.70 -29.14 4.93 -446.11 -2.20 -31.34 16 14 C 0.53 20.58 5.46 87.66 0.48 21.06 16 15 O -0.58 -27.16 12.38 -3.04 -0.04 -27.20 16 16 C -0.07 -2.04 1.00 -53.05 -0.05 -2.09 16 17 C -0.04 -1.05 4.13 -19.87 -0.08 -1.13 16 18 C -0.12 -2.26 8.89 22.27 0.20 -2.06 16 19 C -0.08 -1.23 10.04 22.26 0.22 -1.00 16 20 C -0.15 -2.91 10.03 22.31 0.22 -2.68 16 21 C 0.08 1.98 7.30 22.37 0.16 2.15 16 22 F -0.15 -4.18 17.27 44.97 0.78 -3.40 16 23 C -0.16 -4.24 9.37 22.31 0.21 -4.03 16 24 C -0.11 -2.74 6.66 31.12 0.21 -2.53 16 25 C -0.14 -3.20 7.70 31.12 0.24 -2.96 16 26 C -0.11 -2.31 6.22 31.21 0.19 -2.12 16 27 H 0.04 2.02 5.55 -2.39 -0.01 2.01 16 28 H 0.03 1.42 7.80 -2.38 -0.02 1.40 16 29 H 0.04 1.70 8.14 -2.39 -0.02 1.69 16 30 H 0.07 4.08 5.95 -2.39 -0.01 4.06 16 31 H 0.03 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 33 H 0.40 14.71 7.81 -92.70 -0.72 13.99 16 34 H 0.15 2.22 6.98 -2.91 -0.02 2.20 16 35 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 36 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.12 3.42 8.04 -2.91 -0.02 3.40 16 38 H 0.11 2.19 8.09 -2.39 -0.02 2.17 16 39 H 0.06 1.75 7.50 -2.38 -0.02 1.73 16 40 H 0.06 1.74 7.89 -2.38 -0.02 1.72 16 41 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 43 H 0.13 1.86 7.40 -2.39 -0.02 1.84 16 Total: -1.00 -66.84 349.06 4.66 -62.18 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 0.30 Total: 29.45 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 3.55 Total: -21.18 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -1.95 Total: -83.67 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.04 Total: -27.20 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.78 Total: -3.40 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Total: -66.84 4.66 -62.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183888883.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.142 kcal (2) G-P(sol) polarization free energy of solvation -66.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds