Wall clock time and date at job start Tue Mar 31 2020 09:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47517 * 2 1 4 4 C 1.50706 * 109.47296 * 240.00152 * 2 1 3 5 5 H 1.07993 * 119.99909 * 245.54032 * 4 2 1 6 6 C 1.37870 * 119.99764 * 65.54779 * 4 2 1 7 7 N 1.31519 * 120.00377 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99914 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47288 * 89.99465 * 8 6 4 10 10 H 1.48498 * 109.47265 * 209.99846 * 8 6 4 11 11 H 1.48497 * 109.46970 * 329.99524 * 8 6 4 12 12 N 1.46499 * 109.47323 * 120.00119 * 2 1 3 13 13 C 1.34780 * 119.99812 * 270.35706 * 12 2 1 14 14 O 1.21273 * 120.00461 * 5.15362 * 13 12 2 15 15 C 1.50704 * 119.99538 * 185.15027 * 13 12 2 16 16 C 1.52994 * 112.91115 * 283.67842 * 15 13 12 17 17 C 1.50702 * 109.47386 * 315.82843 * 16 15 13 18 18 C 1.38267 * 119.98551 * 274.93228 * 17 16 15 19 19 C 1.38221 * 120.05233 * 179.72591 * 18 17 16 20 20 C 1.38224 * 120.02360 * 0.54314 * 19 18 17 21 21 C 1.38436 * 119.97136 * 359.72769 * 20 19 18 22 22 F 1.35106 * 120.02190 * 180.02562 * 21 20 19 23 23 C 1.38178 * 119.98757 * 95.20191 * 17 16 15 24 24 C 1.53779 * 113.61417 * 54.93817 * 15 13 12 25 25 C 1.53775 * 87.08382 * 89.11308 * 24 15 13 26 26 C 1.53783 * 87.17425 * 25.39054 * 25 24 15 27 27 H 1.09001 * 109.47009 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47533 * 299.99789 * 1 2 3 29 29 H 1.08997 * 109.47253 * 59.99876 * 1 2 3 30 30 H 0.96996 * 119.99695 * 179.97438 * 7 6 4 31 31 H 0.97000 * 120.00296 * 90.35145 * 12 2 1 32 32 H 1.09003 * 109.46739 * 75.82222 * 16 15 13 33 33 H 1.09000 * 109.47369 * 195.82036 * 16 15 13 34 34 H 1.08002 * 119.96884 * 359.97392 * 18 17 16 35 35 H 1.07998 * 119.98985 * 180.27201 * 19 18 17 36 36 H 1.07994 * 120.01303 * 179.70749 * 20 19 18 37 37 H 1.07995 * 120.01341 * 0.02562 * 23 17 16 38 38 H 1.08998 * 113.61647 * 334.56185 * 24 15 13 39 39 H 1.09006 * 113.61208 * 203.66082 * 24 15 13 40 40 H 1.09003 * 113.61352 * 139.98069 * 25 24 15 41 41 H 1.09000 * 113.61484 * 270.80022 * 25 24 15 42 42 H 1.09001 * 113.61222 * 89.15755 * 26 25 24 43 43 H 1.08999 * 113.61327 * 220.06266 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5774 -1.6376 -1.1339 6 6 1.7961 -0.1764 -2.4795 7 7 1.1320 0.9527 -2.5971 8 14 2.4195 -1.0565 -4.0047 9 1 1.3835 -2.0046 -4.4873 10 1 2.7118 -0.0603 -5.0664 11 1 3.6588 -1.8043 -3.6729 12 7 2.0183 -0.6906 1.1961 13 6 2.2361 0.0013 2.3321 14 8 1.9401 1.1758 2.3929 15 6 2.8474 -0.6846 3.5266 16 6 1.8550 -1.5788 4.2725 17 6 0.5415 -0.8554 4.4225 18 6 0.3481 0.0136 5.4805 19 6 -0.8541 0.6820 5.6162 20 6 -1.8684 0.4739 4.7006 21 6 -1.6779 -0.4002 3.6442 22 9 -2.6685 -0.6040 2.7483 23 6 -0.4711 -1.0651 3.5060 24 6 4.1886 -1.3727 3.2223 25 6 4.8643 -0.0375 3.5762 26 6 3.6336 0.2674 4.4465 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 0.9662 1.3285 -3.4758 31 1 2.1849 -1.6459 1.1707 32 1 1.7007 -2.4990 3.7090 33 1 2.2524 -1.8189 5.2586 34 1 1.1384 0.1731 6.1990 35 1 -1.0025 1.3639 6.4405 36 1 -2.8093 0.9927 4.8096 37 1 -0.3214 -1.7475 2.6824 38 1 4.3058 -1.6578 2.1768 39 1 4.4310 -2.1811 3.9122 40 1 5.7855 -0.1522 4.1475 41 1 4.9748 0.6349 2.7254 42 1 3.7240 -0.0918 5.4716 43 1 3.3034 1.3045 4.3878 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185736299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:00 Heat of formation + Delta-G solvation = -51.370988 kcal Electronic energy + Delta-G solvation = -26053.883455 eV Core-core repulsion = 22399.501957 eV Total energy + Delta-G solvation = -3654.381498 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.61898 -40.51850 -38.58777 -37.07001 -34.66148 -32.79346 -32.24590 -30.38617 -29.18095 -27.92488 -25.48416 -25.20332 -24.18404 -22.58490 -22.05746 -21.01335 -20.02043 -18.64894 -17.26819 -16.48117 -16.17311 -16.01766 -15.63280 -15.50097 -15.26753 -15.16773 -14.54165 -14.09812 -13.80835 -13.41718 -13.35574 -13.04567 -12.77950 -12.45735 -12.35711 -12.28761 -11.98994 -11.66498 -11.62439 -11.39356 -11.06696 -10.95683 -10.88675 -10.73921 -10.70716 -10.30683 -10.26024 -10.21830 -10.06366 -9.02771 -8.88152 -8.74109 -8.52559 -8.46195 -7.83728 -6.10229 -4.18468 1.31438 1.38228 3.25587 3.32317 3.34101 3.44153 3.71901 4.06735 4.36264 4.40135 4.56354 4.66432 4.87877 4.91825 4.96752 5.04119 5.16206 5.23365 5.29645 5.44123 5.48574 5.58457 5.65115 5.71797 5.81555 5.94297 6.00194 6.04217 6.18583 6.25383 6.28260 6.33325 6.42107 6.52144 6.62121 6.84493 6.99459 7.06468 7.18826 7.51206 7.59186 7.72230 7.94780 8.14230 8.73270 8.82920 9.20330 9.49321 10.97118 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.013189 B = 0.005521 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.503544 B = 5070.435888 C = 6580.140114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.266 3.734 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.707 5.707 13 C 0.531 3.469 14 O -0.546 6.546 15 C -0.103 4.103 16 C -0.059 4.059 17 C -0.051 4.051 18 C -0.120 4.120 19 C -0.092 4.092 20 C -0.161 4.161 21 C 0.105 3.895 22 F -0.140 7.140 23 C -0.137 4.137 24 C -0.129 4.129 25 C -0.141 4.141 26 C -0.118 4.118 27 H 0.025 0.975 28 H 0.015 0.985 29 H 0.078 0.922 30 H 0.264 0.736 31 H 0.385 0.615 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.166 -5.506 17.085 17.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.165 3.835 3 H 0.069 0.931 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.354 5.354 13 C 0.314 3.686 14 O -0.424 6.424 15 C -0.106 4.106 16 C -0.097 4.097 17 C -0.051 4.051 18 C -0.138 4.138 19 C -0.110 4.110 20 C -0.179 4.179 21 C 0.086 3.914 22 F -0.118 7.118 23 C -0.156 4.156 24 C -0.167 4.167 25 C -0.179 4.179 26 C -0.155 4.155 27 H 0.044 0.956 28 H 0.034 0.966 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.217 0.783 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.848 -4.513 16.893 17.506 hybrid contribution 0.091 -0.874 -1.236 1.516 sum 0.939 -5.387 15.657 16.584 Atomic orbital electron populations 1.21998 0.98652 0.98761 1.00329 1.18712 0.90720 0.94131 0.79976 0.93102 1.21211 1.36636 1.08689 0.90565 0.92208 1.24892 0.94920 0.94862 0.99008 1.69944 1.39554 1.18545 1.24019 0.86491 0.79126 0.79289 0.82441 1.20573 1.21117 1.19885 1.46435 1.65613 1.11403 1.11954 1.19569 0.78638 0.86946 0.83406 1.90642 1.52486 1.16414 1.82896 1.22126 0.94483 0.97769 0.96245 1.20550 0.91087 0.97088 1.00945 1.19598 0.94647 0.96801 0.94052 1.20969 0.97342 0.97104 0.98384 1.20891 0.92842 0.98776 0.98509 1.21076 1.01130 1.00177 0.95559 1.17666 0.86187 0.98589 0.89006 1.91506 1.60076 1.93835 1.66402 1.21058 0.92161 1.01983 1.00427 1.23017 0.93882 0.97205 1.02589 1.22808 0.97220 0.97494 1.00356 1.22902 0.95055 1.00653 0.96939 0.95580 0.96579 0.90311 0.92625 0.78267 0.90249 0.89804 0.85746 0.85408 0.85216 0.84880 0.90510 0.89542 0.91442 0.89930 0.89955 0.90032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.35 37.15 0.35 -3.15 16 2 C 0.27 6.78 2.49 -69.08 -0.17 6.61 16 3 H 0.05 1.52 7.51 -51.93 -0.39 1.13 16 4 C -0.53 -14.14 8.68 -34.44 -0.30 -14.44 16 5 H 0.06 1.51 7.76 -52.49 -0.41 1.11 16 6 C 0.07 1.81 5.33 -17.82 -0.09 1.71 16 7 N -0.88 -25.37 11.74 55.43 0.65 -24.72 16 8 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.71 -14.49 4.79 -54.93 -0.26 -14.75 16 13 C 0.53 10.31 4.83 -10.98 -0.05 10.26 16 14 O -0.55 -13.03 15.75 5.56 0.09 -12.94 16 15 C -0.10 -1.43 0.90 -154.76 -0.14 -1.57 16 16 C -0.06 -0.69 4.97 -27.88 -0.14 -0.83 16 17 C -0.05 -0.71 4.33 -104.63 -0.45 -1.16 16 18 C -0.12 -1.51 9.72 -39.58 -0.38 -1.90 16 19 C -0.09 -1.14 10.04 -39.59 -0.40 -1.54 16 20 C -0.16 -2.24 10.03 -39.51 -0.40 -2.64 16 21 C 0.10 1.71 7.30 -39.42 -0.29 1.42 16 22 F -0.14 -2.45 17.27 2.25 0.04 -2.41 16 23 C -0.14 -2.19 9.01 -39.51 -0.36 -2.54 16 24 C -0.13 -1.54 7.16 -25.92 -0.19 -1.73 16 25 C -0.14 -1.78 7.80 -25.92 -0.20 -1.98 16 26 C -0.12 -1.50 7.14 -25.82 -0.18 -1.69 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 2.17 6.52 -51.93 -0.34 1.83 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.39 6.93 8.39 -40.82 -0.34 6.59 16 32 H 0.08 0.85 8.05 -51.93 -0.42 0.44 16 33 H 0.08 0.76 7.83 -51.93 -0.41 0.35 16 34 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 35 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 37 H 0.13 2.15 8.06 -52.49 -0.42 1.73 16 38 H 0.08 1.01 7.75 -51.93 -0.40 0.61 16 39 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.08 0.81 7.91 -51.93 -0.41 0.40 16 43 H 0.08 1.24 7.41 -51.93 -0.38 0.86 16 LS Contribution 359.81 15.07 5.42 5.42 Total: -1.00 -31.65 359.81 -8.92 -40.57 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -6.44 Total: 8.17 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -3.40 Total: -15.15 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.39 Total: -39.47 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.09 Total: -12.94 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.04 Total: -2.41 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.65 -8.92 -40.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185736299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.803 kcal (2) G-P(sol) polarization free energy of solvation -31.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds