Wall clock time and date at job start Tue Mar 31 2020 09:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47517 * 2 1 4 4 C 1.50706 * 109.47296 * 240.00152 * 2 1 3 5 5 H 1.07993 * 119.99909 * 245.54032 * 4 2 1 6 6 C 1.37870 * 119.99764 * 65.54779 * 4 2 1 7 7 N 1.31519 * 120.00377 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99914 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47288 * 89.99465 * 8 6 4 10 10 H 1.48498 * 109.47265 * 209.99846 * 8 6 4 11 11 H 1.48497 * 109.46970 * 329.99524 * 8 6 4 12 12 N 1.46499 * 109.47323 * 120.00119 * 2 1 3 13 13 C 1.34780 * 119.99812 * 270.35706 * 12 2 1 14 14 O 1.21273 * 120.00461 * 5.15362 * 13 12 2 15 15 C 1.50704 * 119.99538 * 185.15027 * 13 12 2 16 16 C 1.52994 * 112.91115 * 283.67842 * 15 13 12 17 17 C 1.50702 * 109.47386 * 315.82843 * 16 15 13 18 18 C 1.38267 * 119.98551 * 274.93228 * 17 16 15 19 19 C 1.38221 * 120.05233 * 179.72591 * 18 17 16 20 20 C 1.38224 * 120.02360 * 0.54314 * 19 18 17 21 21 C 1.38436 * 119.97136 * 359.72769 * 20 19 18 22 22 F 1.35106 * 120.02190 * 180.02562 * 21 20 19 23 23 C 1.38178 * 119.98757 * 95.20191 * 17 16 15 24 24 C 1.53779 * 113.61417 * 54.93817 * 15 13 12 25 25 C 1.53775 * 87.08382 * 89.11308 * 24 15 13 26 26 C 1.53783 * 87.17425 * 25.39054 * 25 24 15 27 27 H 1.09001 * 109.47009 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47533 * 299.99789 * 1 2 3 29 29 H 1.08997 * 109.47253 * 59.99876 * 1 2 3 30 30 H 0.96996 * 119.99695 * 179.97438 * 7 6 4 31 31 H 0.97000 * 120.00296 * 90.35145 * 12 2 1 32 32 H 1.09003 * 109.46739 * 75.82222 * 16 15 13 33 33 H 1.09000 * 109.47369 * 195.82036 * 16 15 13 34 34 H 1.08002 * 119.96884 * 359.97392 * 18 17 16 35 35 H 1.07998 * 119.98985 * 180.27201 * 19 18 17 36 36 H 1.07994 * 120.01303 * 179.70749 * 20 19 18 37 37 H 1.07995 * 120.01341 * 0.02562 * 23 17 16 38 38 H 1.08998 * 113.61647 * 334.56185 * 24 15 13 39 39 H 1.09006 * 113.61208 * 203.66082 * 24 15 13 40 40 H 1.09003 * 113.61352 * 139.98069 * 25 24 15 41 41 H 1.09000 * 113.61484 * 270.80022 * 25 24 15 42 42 H 1.09001 * 113.61222 * 89.15755 * 26 25 24 43 43 H 1.08999 * 113.61327 * 220.06266 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5774 -1.6376 -1.1339 6 6 1.7961 -0.1764 -2.4795 7 7 1.1320 0.9527 -2.5971 8 14 2.4195 -1.0565 -4.0047 9 1 1.3835 -2.0046 -4.4873 10 1 2.7118 -0.0603 -5.0664 11 1 3.6588 -1.8043 -3.6729 12 7 2.0183 -0.6906 1.1961 13 6 2.2361 0.0013 2.3321 14 8 1.9401 1.1758 2.3929 15 6 2.8474 -0.6846 3.5266 16 6 1.8550 -1.5788 4.2725 17 6 0.5415 -0.8554 4.4225 18 6 0.3481 0.0136 5.4805 19 6 -0.8541 0.6820 5.6162 20 6 -1.8684 0.4739 4.7006 21 6 -1.6779 -0.4002 3.6442 22 9 -2.6685 -0.6040 2.7483 23 6 -0.4711 -1.0651 3.5060 24 6 4.1886 -1.3727 3.2223 25 6 4.8643 -0.0375 3.5762 26 6 3.6336 0.2674 4.4465 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 0.9662 1.3285 -3.4758 31 1 2.1849 -1.6459 1.1707 32 1 1.7007 -2.4990 3.7090 33 1 2.2524 -1.8189 5.2586 34 1 1.1384 0.1731 6.1990 35 1 -1.0025 1.3639 6.4405 36 1 -2.8093 0.9927 4.8096 37 1 -0.3214 -1.7475 2.6824 38 1 4.3058 -1.6578 2.1768 39 1 4.4310 -2.1811 3.9122 40 1 5.7855 -0.1522 4.1475 41 1 4.9748 0.6349 2.7254 42 1 3.7240 -0.0918 5.4716 43 1 3.3034 1.3045 4.3878 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185736299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:59 Heat of formation + Delta-G solvation = -69.783128 kcal Electronic energy + Delta-G solvation = -26054.681866 eV Core-core repulsion = 22399.501957 eV Total energy + Delta-G solvation = -3655.179908 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.90066 -41.76915 -39.72324 -38.49333 -36.58365 -34.29921 -33.72561 -31.46105 -31.05685 -29.06761 -27.34712 -26.45400 -25.43504 -23.68532 -23.46570 -22.26182 -21.64477 -20.22168 -18.50561 -18.15028 -17.34060 -17.16010 -17.08366 -17.05666 -16.69925 -16.42940 -16.17042 -15.37614 -15.10946 -14.76881 -14.51484 -14.46743 -14.29909 -14.16150 -13.63237 -13.44636 -13.27299 -13.09015 -12.97572 -12.91834 -12.75266 -12.61235 -12.38526 -12.34290 -12.14999 -11.90910 -11.74886 -11.26474 -11.16119 -11.07437 -10.65394 -10.43729 -9.83726 -9.69643 -9.54376 -8.20233 -6.36994 0.23765 0.30341 1.41906 1.42977 1.53523 1.92952 2.34732 2.62266 2.68522 3.11461 3.29881 3.52268 3.61376 3.84871 3.91266 3.93983 3.99874 4.13537 4.26066 4.33591 4.44424 4.58822 4.68671 4.71183 4.85529 4.86410 4.89896 4.94805 5.06078 5.07282 5.10697 5.14739 5.20551 5.23969 5.30016 5.39267 5.40727 5.55680 5.58944 5.62337 5.63228 5.92644 6.01466 6.05725 6.73317 7.03556 7.31816 7.64380 8.87725 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.013189 B = 0.005521 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.503544 B = 5070.435888 C = 6580.140114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.277 3.723 3 H -0.004 1.004 4 C -0.543 4.543 5 H 0.074 0.926 6 C 0.012 3.988 7 N -0.922 5.922 8 Si 0.972 3.028 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.260 1.260 12 N -0.704 5.704 13 C 0.527 3.473 14 O -0.598 6.598 15 C -0.103 4.103 16 C -0.055 4.055 17 C -0.060 4.060 18 C -0.119 4.119 19 C -0.091 4.091 20 C -0.170 4.170 21 C 0.065 3.935 22 F -0.158 7.158 23 C -0.160 4.160 24 C -0.116 4.116 25 C -0.147 4.147 26 C -0.111 4.111 27 H 0.037 0.963 28 H 0.005 0.995 29 H 0.050 0.950 30 H 0.264 0.736 31 H 0.400 0.600 32 H 0.089 0.911 33 H 0.129 0.871 34 H 0.160 0.840 35 H 0.163 0.837 36 H 0.144 0.856 37 H 0.118 0.882 38 H 0.060 0.940 39 H 0.133 0.867 40 H 0.099 0.901 41 H 0.042 0.958 42 H 0.129 0.871 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.259 -7.734 19.643 21.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.173 3.827 3 H 0.014 0.986 4 C -0.582 4.582 5 H 0.092 0.908 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.796 3.204 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.185 1.185 12 N -0.352 5.352 13 C 0.315 3.685 14 O -0.479 6.479 15 C -0.106 4.106 16 C -0.092 4.092 17 C -0.060 4.060 18 C -0.137 4.137 19 C -0.109 4.109 20 C -0.189 4.189 21 C 0.046 3.954 22 F -0.137 7.137 23 C -0.179 4.179 24 C -0.153 4.153 25 C -0.184 4.184 26 C -0.148 4.148 27 H 0.056 0.944 28 H 0.024 0.976 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.234 0.766 32 H 0.107 0.893 33 H 0.147 0.853 34 H 0.177 0.823 35 H 0.181 0.819 36 H 0.162 0.838 37 H 0.136 0.864 38 H 0.078 0.922 39 H 0.151 0.849 40 H 0.117 0.883 41 H 0.060 0.940 42 H 0.147 0.853 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.956 -6.783 19.476 20.834 hybrid contribution -0.567 -0.087 -1.975 2.056 sum 2.389 -6.870 17.501 18.952 Atomic orbital electron populations 1.21756 0.98820 0.98745 0.98373 1.18211 0.90417 0.91831 0.82211 0.98603 1.21552 1.36539 1.09089 0.90976 0.90818 1.25848 0.94968 0.95487 1.02486 1.70108 1.40886 1.20288 1.24738 0.85349 0.79012 0.78015 0.78001 1.19751 1.21294 1.18451 1.46172 1.65811 1.12002 1.11216 1.20617 0.77233 0.86398 0.84290 1.90613 1.54416 1.18978 1.83890 1.22068 0.95841 0.98745 0.93959 1.20697 0.89135 0.96325 1.03074 1.19957 0.95042 0.97227 0.93802 1.21459 0.98166 0.95765 0.98276 1.21379 0.92198 0.98641 0.98672 1.21389 1.02569 0.99683 0.95214 1.18135 0.86484 1.00609 0.90131 1.91444 1.60833 1.94186 1.67262 1.21147 0.93057 1.02596 1.01088 1.23093 0.91469 0.97881 1.02884 1.22794 0.98932 0.97195 0.99472 1.23008 0.94104 0.98661 0.99030 0.94403 0.97586 0.93058 0.92672 0.76557 0.89289 0.85258 0.82274 0.81904 0.83784 0.86358 0.92156 0.84934 0.88268 0.93957 0.85251 0.93251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.31 9.35 71.98 0.67 -5.64 16 2 C 0.28 14.84 2.49 44.25 0.11 14.95 16 3 H 0.00 -0.26 7.51 -2.38 -0.02 -0.27 16 4 C -0.54 -29.44 8.68 25.60 0.22 -29.21 16 5 H 0.07 3.70 7.76 -2.91 -0.02 3.68 16 6 C 0.01 0.66 5.33 84.65 0.45 1.11 16 7 N -0.92 -55.08 11.74 21.45 0.25 -54.83 16 8 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 9 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 12 N -0.70 -29.65 4.79 -446.09 -2.14 -31.78 16 13 C 0.53 20.86 4.83 87.66 0.42 21.29 16 14 O -0.60 -29.92 15.75 -3.01 -0.05 -29.96 16 15 C -0.10 -2.62 0.90 -52.34 -0.05 -2.67 16 16 C -0.06 -1.08 4.97 29.85 0.15 -0.93 16 17 C -0.06 -1.56 4.33 -19.87 -0.09 -1.65 16 18 C -0.12 -2.64 9.72 22.27 0.22 -2.42 16 19 C -0.09 -2.06 10.04 22.26 0.22 -1.83 16 20 C -0.17 -4.73 10.03 22.31 0.22 -4.51 16 21 C 0.07 2.23 7.30 22.37 0.16 2.39 16 22 F -0.16 -5.98 17.27 44.97 0.78 -5.20 16 23 C -0.16 -5.20 9.01 22.31 0.20 -5.00 16 24 C -0.12 -2.34 7.16 31.12 0.22 -2.12 16 25 C -0.15 -3.31 7.80 31.12 0.24 -3.07 16 26 C -0.11 -2.45 7.14 31.18 0.22 -2.23 16 27 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.05 3.00 6.52 -2.39 -0.02 2.98 16 30 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 31 H 0.40 14.36 8.39 -92.71 -0.78 13.58 16 32 H 0.09 1.59 8.05 -2.39 -0.02 1.57 16 33 H 0.13 1.44 7.83 -2.39 -0.02 1.42 16 34 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 37 H 0.12 4.02 8.06 -2.91 -0.02 4.00 16 38 H 0.06 1.44 7.75 -2.39 -0.02 1.42 16 39 H 0.13 1.56 8.10 -2.38 -0.02 1.54 16 40 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.13 1.70 7.91 -2.39 -0.02 1.68 16 43 H 0.05 1.44 7.41 -2.39 -0.02 1.42 16 Total: -1.00 -75.78 359.81 4.71 -71.06 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.23 Total: 27.21 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: 3.61 Total: -21.54 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -1.89 Total: -86.61 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.05 Total: -29.96 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 0.78 Total: -5.20 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -75.78 4.71 -71.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185736299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.281 kcal (2) G-P(sol) polarization free energy of solvation -75.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds