Wall clock time and date at job start Tue Mar 31 2020 08:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46989 * 2 1 4 4 H 1.08997 * 109.62770 * 304.60508 * 3 2 1 5 5 C 1.52900 * 109.62969 * 184.01025 * 3 2 1 6 6 C 1.50709 * 109.95984 * 189.90932 * 5 3 2 7 7 C 1.38685 * 118.49280 * 196.87505 * 6 5 3 8 8 C 1.38035 * 120.35100 * 180.16489 * 7 6 5 9 9 C 1.38264 * 119.82655 * 0.02562 * 8 7 6 10 10 C 1.38014 * 119.87139 * 359.92976 * 9 8 7 11 11 C 1.37837 * 121.66411 * 16.90430 * 6 5 3 12 12 C 1.50619 * 121.84322 * 359.53463 * 11 6 5 13 13 N 1.46636 * 110.49581 * 17.56129 * 12 11 6 14 14 C 1.46892 * 111.00174 * 70.87692 * 13 12 11 15 15 C 1.52998 * 109.47516 * 53.33988 * 14 13 12 16 16 C 1.53002 * 109.47320 * 174.42927 * 15 14 13 17 17 S 1.80999 * 109.47102 * 179.97438 * 16 15 14 18 18 C 1.76200 * 99.99831 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00068 * 0.02562 * 18 17 16 20 20 C 1.38797 * 119.99852 * 179.97438 * 18 17 16 21 21 N 1.31630 * 119.99972 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00031 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46956 * 60.00413 * 22 20 18 24 24 H 1.48499 * 109.46927 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46893 * 300.00421 * 22 20 18 26 26 H 1.09005 * 109.46738 * 60.00334 * 1 2 3 27 27 H 1.09004 * 109.47148 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47219 * 299.99730 * 1 2 3 29 29 H 1.08999 * 109.47606 * 239.99795 * 2 1 3 30 30 H 1.08997 * 109.46826 * 119.99968 * 2 1 3 31 31 H 1.08994 * 109.39040 * 310.06555 * 5 3 2 32 32 H 1.08999 * 109.38335 * 69.76326 * 5 3 2 33 33 H 1.07999 * 119.82368 * 0.18542 * 7 6 5 34 34 H 1.07993 * 120.08270 * 180.02562 * 8 7 6 35 35 H 1.08002 * 120.06120 * 179.97438 * 9 8 7 36 36 H 1.07990 * 119.81233 * 180.02562 * 10 9 8 37 37 H 1.08997 * 109.28542 * 257.25098 * 12 11 6 38 38 H 1.09008 * 109.31290 * 137.88059 * 12 11 6 39 39 H 1.09000 * 109.47139 * 293.33373 * 14 13 12 40 40 H 1.09005 * 109.46968 * 173.34197 * 14 13 12 41 41 H 1.08995 * 109.46997 * 54.42299 * 15 14 13 42 42 H 1.09005 * 109.46637 * 294.42862 * 15 14 13 43 43 H 1.08993 * 109.46902 * 300.00162 * 16 15 14 44 44 H 1.09005 * 109.46871 * 59.99927 * 16 15 14 45 45 H 0.97003 * 120.00109 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6123 1.9820 -0.8450 5 6 3.5656 1.4480 -0.1007 6 6 4.0922 2.8391 0.1414 7 6 5.3905 3.1322 -0.2484 8 6 5.9129 4.3931 -0.0419 9 6 5.1379 5.3690 0.5571 10 6 3.8455 5.0787 0.9446 11 6 3.3182 3.8126 0.7356 12 6 1.9000 3.5464 1.1675 13 7 1.6525 2.1038 1.2563 14 6 2.3623 1.5174 2.4008 15 6 2.0042 2.2885 3.6728 16 6 2.6319 1.5949 4.8835 17 16 2.2088 2.5077 6.3881 18 6 3.0351 1.5178 7.5890 19 1 3.5880 0.6431 7.2798 20 6 2.9763 1.8628 8.9321 21 7 2.3029 2.9292 9.3088 22 14 3.8518 0.8130 10.2053 23 1 5.3060 0.7822 9.9062 24 1 3.6359 1.3907 11.5562 25 1 3.3088 -0.5686 10.1656 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.9799 0.7693 0.6448 32 1 3.8637 1.1162 -1.0953 33 1 5.9959 2.3700 -0.7163 34 1 6.9243 4.6168 -0.3475 35 1 5.5430 6.3567 0.7209 36 1 3.2409 5.8417 1.4120 37 1 1.2145 3.9857 0.4428 38 1 1.7287 4.0020 2.1429 39 1 3.4373 1.5763 2.2306 40 1 2.0692 0.4736 2.5140 41 1 0.9208 2.3135 3.7895 42 1 2.3854 3.3071 3.5995 43 1 2.2508 0.5764 4.9567 44 1 3.7154 1.5700 4.7666 45 1 2.2615 3.1702 10.2475 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185786288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:01 Heat of formation + Delta-G solvation = 7.664117 kcal Electronic energy + Delta-G solvation = -22753.980576 eV Core-core repulsion = 19668.372209 eV Total energy + Delta-G solvation = -3085.608368 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.77025 -37.87571 -34.45098 -32.86232 -32.40043 -32.23203 -30.45947 -28.72973 -26.53464 -25.50628 -24.27645 -23.76924 -22.29246 -21.27347 -21.07471 -18.76329 -17.46163 -16.61930 -16.04497 -15.73061 -15.52463 -15.02665 -14.78328 -14.64796 -14.06513 -13.87161 -13.76883 -13.40944 -13.38126 -13.10491 -12.81049 -12.56040 -12.16502 -11.96002 -11.65993 -11.56537 -11.47696 -11.33909 -11.23931 -11.17719 -11.02015 -10.87175 -10.74546 -10.60992 -10.43908 -10.16217 -9.49553 -9.02356 -8.83245 -8.62827 -8.27835 -8.26456 -6.48961 -6.19868 -3.89623 1.27814 1.30567 3.23601 3.24970 3.29424 3.57421 3.66539 3.94484 4.25660 4.43920 4.70850 4.74581 4.82862 4.96612 5.00042 5.11112 5.15943 5.19118 5.27317 5.32811 5.35732 5.40823 5.48915 5.54408 5.59141 5.62823 5.68774 5.79136 5.82680 5.85859 5.93043 5.93228 5.96419 6.05875 6.12956 6.20880 6.34559 6.36845 6.39837 6.44295 6.54573 6.64360 6.78041 6.93997 7.08567 7.13398 7.63001 8.39292 9.26334 10.88305 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.014135 B = 0.003538 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.487830 B = 7912.638451 C = 8987.650194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.083 3.917 4 H 0.083 0.917 5 C -0.114 4.114 6 C -0.078 4.078 7 C -0.121 4.121 8 C -0.123 4.123 9 C -0.122 4.122 10 C -0.111 4.111 11 C -0.106 4.106 12 C 0.082 3.918 13 N -0.516 5.516 14 C 0.051 3.949 15 C -0.096 4.096 16 C -0.110 4.110 17 S -0.132 6.132 18 C -0.516 4.516 19 H 0.071 0.929 20 C 0.072 3.928 21 N -0.870 5.870 22 Si 0.917 3.083 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.039 0.961 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.837 -0.338 -22.665 22.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C -0.025 4.025 4 H 0.101 0.899 5 C -0.153 4.153 6 C -0.078 4.078 7 C -0.139 4.139 8 C -0.141 4.141 9 C -0.140 4.140 10 C -0.130 4.130 11 C -0.107 4.107 12 C -0.046 4.046 13 N -0.237 5.237 14 C -0.078 4.078 15 C -0.135 4.135 16 C -0.260 4.260 17 S 0.096 5.904 18 C -0.664 4.664 19 H 0.089 0.911 20 C -0.137 4.137 21 N -0.506 5.506 22 Si 0.743 3.257 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.199 1.199 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.058 0.942 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.615 0.625 -22.277 22.294 hybrid contribution 2.448 -1.541 0.582 2.950 sum 3.062 -0.916 -21.695 21.930 Atomic orbital electron populations 1.21649 0.94981 1.00889 1.02590 1.21553 0.97054 0.94820 1.01811 1.21788 0.91946 0.95884 0.92910 0.89906 1.21164 0.97780 0.93763 1.02549 1.19527 0.94157 0.95314 0.98799 1.21051 0.94995 0.96889 1.00924 1.21056 0.99668 0.93575 0.99845 1.21091 0.94486 0.99375 0.99046 1.21121 0.95766 0.96309 0.99789 1.20428 0.97865 0.93751 0.98686 1.21295 0.90674 0.89801 1.02861 1.62695 1.56067 1.02276 1.02648 1.22304 0.96390 0.99249 0.89844 1.21352 1.01662 0.98817 0.91652 1.23207 1.01804 1.02142 0.98807 1.84587 1.70273 1.38984 0.96536 1.22651 1.37125 1.13695 0.92968 0.91092 1.24997 0.95412 0.95515 0.97775 1.70014 1.39301 1.24197 1.17076 0.86246 0.79803 0.80060 0.79561 1.19979 1.20809 1.19929 0.93360 0.93491 0.91138 0.92012 0.91615 0.90072 0.90559 0.86465 0.86319 0.86156 0.85878 0.89652 0.88318 0.94232 0.90596 0.90761 0.91708 0.92180 0.92515 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.80 37.16 0.36 -0.98 16 2 C -0.11 -1.06 5.34 -26.73 -0.14 -1.21 16 3 C 0.08 0.85 2.19 -67.62 -0.15 0.70 16 4 H 0.08 0.82 8.05 -51.93 -0.42 0.41 16 5 C -0.11 -1.16 4.46 -27.93 -0.12 -1.29 16 6 C -0.08 -0.91 5.08 -104.60 -0.53 -1.44 16 7 C -0.12 -1.33 9.66 -39.49 -0.38 -1.71 16 8 C -0.12 -1.32 10.05 -39.65 -0.40 -1.72 16 9 C -0.12 -1.34 10.05 -39.65 -0.40 -1.74 16 10 C -0.11 -1.31 9.65 -39.48 -0.38 -1.69 16 11 C -0.11 -1.29 5.36 -104.63 -0.56 -1.85 16 12 C 0.08 0.96 5.26 -5.16 -0.03 0.93 16 13 N -0.52 -6.15 4.32 -228.21 -0.99 -7.14 16 14 C 0.05 0.70 4.10 -3.83 -0.02 0.69 16 15 C -0.10 -1.60 4.58 -26.73 -0.12 -1.73 16 16 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16 17 S -0.13 -3.50 21.44 -107.50 -2.30 -5.81 16 18 C -0.52 -15.02 9.50 30.94 0.29 -14.73 16 19 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 20 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 22 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.77 7.76 -51.93 -0.40 0.37 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.66 6.49 -51.93 -0.34 0.33 16 31 H 0.08 0.88 6.74 -51.93 -0.35 0.53 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 34 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.10 1.24 5.71 -51.92 -0.30 0.95 16 39 H 0.04 0.57 5.42 -51.93 -0.28 0.29 16 40 H 0.08 1.03 6.61 -51.93 -0.34 0.69 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.06 1.10 6.44 -51.93 -0.33 0.77 16 43 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 44 H 0.06 1.18 8.14 -51.91 -0.42 0.76 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16 LS Contribution 362.80 15.07 5.47 5.47 Total: -1.00 -31.24 362.80 -11.95 -43.19 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.38 Total: 0.93 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: -2.46 Total: -27.87 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: -0.25 Total: -32.66 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -2.30 Total: -5.81 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.24 -11.95 -43.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185786288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.856 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds