Wall clock time and date at job start Tue Mar 31 2020 08:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46989 * 2 1 4 4 H 1.08997 * 109.62770 * 304.60508 * 3 2 1 5 5 C 1.52900 * 109.62969 * 184.01025 * 3 2 1 6 6 C 1.50709 * 109.95984 * 189.90932 * 5 3 2 7 7 C 1.38685 * 118.49280 * 196.87505 * 6 5 3 8 8 C 1.38035 * 120.35100 * 180.16489 * 7 6 5 9 9 C 1.38264 * 119.82655 * 0.02562 * 8 7 6 10 10 C 1.38014 * 119.87139 * 359.92976 * 9 8 7 11 11 C 1.37837 * 121.66411 * 16.90430 * 6 5 3 12 12 C 1.50619 * 121.84322 * 359.53463 * 11 6 5 13 13 N 1.46636 * 110.49581 * 17.56129 * 12 11 6 14 14 C 1.46892 * 111.00174 * 70.87692 * 13 12 11 15 15 C 1.52998 * 109.47516 * 53.33988 * 14 13 12 16 16 C 1.53002 * 109.47320 * 174.42927 * 15 14 13 17 17 S 1.80999 * 109.47102 * 179.97438 * 16 15 14 18 18 C 1.76200 * 99.99831 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00068 * 0.02562 * 18 17 16 20 20 C 1.38797 * 119.99852 * 179.97438 * 18 17 16 21 21 N 1.31630 * 119.99972 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00031 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46956 * 60.00413 * 22 20 18 24 24 H 1.48499 * 109.46927 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46893 * 300.00421 * 22 20 18 26 26 H 1.09005 * 109.46738 * 60.00334 * 1 2 3 27 27 H 1.09004 * 109.47148 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47219 * 299.99730 * 1 2 3 29 29 H 1.08999 * 109.47606 * 239.99795 * 2 1 3 30 30 H 1.08997 * 109.46826 * 119.99968 * 2 1 3 31 31 H 1.08994 * 109.39040 * 310.06555 * 5 3 2 32 32 H 1.08999 * 109.38335 * 69.76326 * 5 3 2 33 33 H 1.07999 * 119.82368 * 0.18542 * 7 6 5 34 34 H 1.07993 * 120.08270 * 180.02562 * 8 7 6 35 35 H 1.08002 * 120.06120 * 179.97438 * 9 8 7 36 36 H 1.07990 * 119.81233 * 180.02562 * 10 9 8 37 37 H 1.08997 * 109.28542 * 257.25098 * 12 11 6 38 38 H 1.09008 * 109.31290 * 137.88059 * 12 11 6 39 39 H 1.09000 * 109.47139 * 293.33373 * 14 13 12 40 40 H 1.09005 * 109.46968 * 173.34197 * 14 13 12 41 41 H 1.08995 * 109.46997 * 54.42299 * 15 14 13 42 42 H 1.09005 * 109.46637 * 294.42862 * 15 14 13 43 43 H 1.08993 * 109.46902 * 300.00162 * 16 15 14 44 44 H 1.09005 * 109.46871 * 59.99927 * 16 15 14 45 45 H 0.97003 * 120.00109 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6123 1.9820 -0.8450 5 6 3.5656 1.4480 -0.1007 6 6 4.0922 2.8391 0.1414 7 6 5.3905 3.1322 -0.2484 8 6 5.9129 4.3931 -0.0419 9 6 5.1379 5.3690 0.5571 10 6 3.8455 5.0787 0.9446 11 6 3.3182 3.8126 0.7356 12 6 1.9000 3.5464 1.1675 13 7 1.6525 2.1038 1.2563 14 6 2.3623 1.5174 2.4008 15 6 2.0042 2.2885 3.6728 16 6 2.6319 1.5949 4.8835 17 16 2.2088 2.5077 6.3881 18 6 3.0351 1.5178 7.5890 19 1 3.5880 0.6431 7.2798 20 6 2.9763 1.8628 8.9321 21 7 2.3029 2.9292 9.3088 22 14 3.8518 0.8130 10.2053 23 1 5.3060 0.7822 9.9062 24 1 3.6359 1.3907 11.5562 25 1 3.3088 -0.5686 10.1656 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.9799 0.7693 0.6448 32 1 3.8637 1.1162 -1.0953 33 1 5.9959 2.3700 -0.7163 34 1 6.9243 4.6168 -0.3475 35 1 5.5430 6.3567 0.7209 36 1 3.2409 5.8417 1.4120 37 1 1.2145 3.9857 0.4428 38 1 1.7287 4.0020 2.1429 39 1 3.4373 1.5763 2.2306 40 1 2.0692 0.4736 2.5140 41 1 0.9208 2.3135 3.7895 42 1 2.3854 3.3071 3.5995 43 1 2.2508 0.5764 4.9567 44 1 3.7154 1.5700 4.7666 45 1 2.2615 3.1702 10.2475 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185786288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:01 Heat of formation + Delta-G solvation = -8.176593 kcal Electronic energy + Delta-G solvation = -22754.667481 eV Core-core repulsion = 19668.372209 eV Total energy + Delta-G solvation = -3086.295272 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.65628 -38.75822 -35.53973 -34.60672 -33.89331 -33.09235 -31.44437 -29.54339 -28.02757 -27.40115 -25.25858 -24.69535 -23.16393 -22.53829 -21.89035 -19.71505 -19.56903 -17.48118 -17.00652 -16.89772 -16.74406 -16.56634 -16.11731 -15.90749 -15.39384 -14.91901 -14.83723 -14.63543 -14.22177 -14.20073 -13.92249 -13.56759 -13.53723 -13.21100 -13.05955 -12.91785 -12.71119 -12.54168 -12.47442 -12.33292 -12.30441 -12.15731 -11.98347 -11.64100 -11.49280 -11.34204 -11.23838 -11.13257 -10.32648 -9.68301 -9.48723 -9.22683 -8.66568 -8.37344 -6.13642 0.42531 0.45358 1.30614 1.40207 1.46928 1.73914 2.28132 2.81322 2.94498 2.96757 3.32493 3.63841 3.83206 3.91661 3.99648 4.00014 4.11554 4.20385 4.23669 4.33725 4.36808 4.48902 4.52773 4.54076 4.55226 4.67783 4.70603 4.75218 4.81090 4.86387 4.89868 5.00407 5.09373 5.11591 5.15332 5.22401 5.26490 5.29047 5.38797 5.39068 5.52745 5.60362 5.60773 5.67726 6.11618 6.13056 6.15460 6.17557 7.04606 8.71910 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.014135 B = 0.003538 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.487830 B = 7912.638451 C = 8987.650194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C 0.086 3.914 4 H 0.089 0.911 5 C -0.110 4.110 6 C -0.091 4.091 7 C -0.129 4.129 8 C -0.130 4.130 9 C -0.132 4.132 10 C -0.129 4.129 11 C -0.121 4.121 12 C 0.084 3.916 13 N -0.517 5.517 14 C 0.067 3.933 15 C -0.083 4.083 16 C -0.085 4.085 17 S -0.194 6.194 18 C -0.541 4.541 19 H 0.071 0.929 20 C 0.017 3.983 21 N -0.907 5.907 22 Si 0.992 3.008 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.264 1.264 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.128 0.872 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.035 0.965 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.874 -1.607 -23.922 24.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.149 4.149 3 C -0.022 4.022 4 H 0.107 0.893 5 C -0.148 4.148 6 C -0.092 4.092 7 C -0.147 4.147 8 C -0.148 4.148 9 C -0.150 4.150 10 C -0.147 4.147 11 C -0.123 4.123 12 C -0.044 4.044 13 N -0.239 5.239 14 C -0.063 4.063 15 C -0.122 4.122 16 C -0.234 4.234 17 S 0.035 5.965 18 C -0.688 4.688 19 H 0.089 0.911 20 C -0.188 4.188 21 N -0.543 5.543 22 Si 0.814 3.186 23 H -0.190 1.190 24 H -0.198 1.198 25 H -0.189 1.189 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.146 0.854 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.053 0.947 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.645 -0.641 -23.553 23.619 hybrid contribution 2.117 -1.102 0.871 2.540 sum 3.762 -1.742 -22.682 23.058 Atomic orbital electron populations 1.21614 0.95114 1.01150 1.01989 1.21549 0.96855 0.94169 1.02341 1.21852 0.92218 0.96307 0.91872 0.89259 1.21152 0.97415 0.92787 1.03444 1.19785 0.94609 0.95905 0.98860 1.21353 0.95000 0.97578 1.00800 1.21391 1.00649 0.93417 0.99294 1.21380 0.94328 1.00426 0.98893 1.21336 0.96483 0.96594 1.00303 1.20532 0.98080 0.94255 0.99434 1.21255 0.91139 0.89620 1.02416 1.62692 1.55750 1.02479 1.02957 1.22046 0.96213 0.98909 0.89112 1.21222 1.00851 0.98603 0.91488 1.23119 1.01807 1.01606 0.96903 1.84595 1.70871 1.41091 0.99948 1.23008 1.37660 1.14067 0.94105 0.91077 1.26048 0.95953 0.96786 0.99995 1.70148 1.40511 1.25890 1.17794 0.85092 0.78664 0.78298 0.76530 1.19012 1.19833 1.18854 0.92587 0.92837 0.93075 0.90033 0.92494 0.90692 0.88591 0.84625 0.84189 0.84554 0.85408 0.88478 0.89778 0.94674 0.90147 0.91269 0.92218 0.91878 0.92744 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.80 71.98 0.71 -1.71 16 2 C -0.11 -1.83 5.34 30.59 0.16 -1.67 16 3 C 0.09 1.58 2.19 44.83 0.10 1.68 16 4 H 0.09 1.58 8.05 -2.39 -0.02 1.56 16 5 C -0.11 -2.01 4.46 29.82 0.13 -1.88 16 6 C -0.09 -2.02 5.08 -19.85 -0.10 -2.12 16 7 C -0.13 -2.63 9.66 22.33 0.22 -2.41 16 8 C -0.13 -2.56 10.05 22.23 0.22 -2.34 16 9 C -0.13 -2.79 10.05 22.22 0.22 -2.57 16 10 C -0.13 -2.99 9.65 22.33 0.22 -2.77 16 11 C -0.12 -2.88 5.36 -19.87 -0.11 -2.99 16 12 C 0.08 1.93 5.26 85.58 0.45 2.38 16 13 N -0.52 -11.88 4.32 -875.93 -3.79 -15.67 16 14 C 0.07 1.79 4.10 86.30 0.35 2.14 16 15 C -0.08 -2.78 4.58 30.59 0.14 -2.64 16 16 C -0.08 -3.54 5.67 71.98 0.41 -3.13 16 17 S -0.19 -10.55 21.44 -56.49 -1.21 -11.76 16 18 C -0.54 -31.86 9.50 67.95 0.65 -31.21 16 19 H 0.07 4.04 7.80 -2.91 -0.02 4.02 16 20 C 0.02 0.99 5.49 84.86 0.47 1.46 16 21 N -0.91 -55.43 13.22 21.65 0.29 -55.14 16 22 Si 0.99 44.42 29.55 68.60 2.03 46.44 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 26 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 28 H 0.05 1.07 7.76 -2.39 -0.02 1.05 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 1.05 6.49 -2.39 -0.02 1.03 16 31 H 0.07 1.48 6.74 -2.39 -0.02 1.47 16 32 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 34 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 35 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 36 H 0.13 2.68 8.06 -2.92 -0.02 2.66 16 37 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.08 2.16 5.71 -2.38 -0.01 2.15 16 39 H 0.04 0.99 5.42 -2.39 -0.01 0.98 16 40 H 0.08 2.10 6.61 -2.38 -0.02 2.09 16 41 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.06 2.07 6.44 -2.38 -0.02 2.06 16 43 H 0.06 2.58 8.14 -2.40 -0.02 2.56 16 44 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -67.40 362.80 2.50 -64.90 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.95 Total: 21.01 kcal Atomic # 6 Polarization: -54.01 SS G_CDS: 4.24 Total: -49.78 kcal Atomic # 7 Polarization: -67.32 SS G_CDS: -3.50 Total: -70.82 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: -10.55 SS G_CDS: -1.21 Total: -11.76 kcal Total: -67.40 2.50 -64.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185786288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.719 kcal (2) G-P(sol) polarization free energy of solvation -67.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds