Wall clock time and date at job start Tue Mar 31 2020 08:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47211 * 2 1 4 4 H 1.08999 * 109.78785 * 55.49039 * 3 2 1 5 5 C 1.52895 * 109.62879 * 175.98498 * 3 2 1 6 6 C 1.50726 * 109.95721 * 170.08852 * 5 3 2 7 7 C 1.38680 * 118.48498 * 163.12602 * 6 5 3 8 8 C 1.38036 * 120.34271 * 179.83584 * 7 6 5 9 9 C 1.38267 * 119.83202 * 359.97438 * 8 7 6 10 10 C 1.38014 * 119.86417 * 0.06817 * 9 8 7 11 11 C 1.37826 * 121.66250 * 343.10574 * 6 5 3 12 12 C 1.50626 * 121.84799 * 0.45127 * 11 6 5 13 13 N 1.46636 * 110.49335 * 342.45304 * 12 11 6 14 14 C 1.46897 * 110.99800 * 289.11493 * 13 12 11 15 15 C 1.52995 * 109.47375 * 292.98775 * 14 13 12 16 16 C 1.53000 * 109.47216 * 180.02562 * 15 14 13 17 17 S 1.81005 * 109.47413 * 179.97438 * 16 15 14 18 18 C 1.76198 * 99.99931 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00293 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99843 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99846 * 359.71985 * 20 18 17 22 22 Si 1.86795 * 120.00110 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47088 * 89.99559 * 22 20 18 24 24 H 1.48505 * 109.47015 * 209.99475 * 22 20 18 25 25 H 1.48498 * 109.47362 * 329.99901 * 22 20 18 26 26 H 1.08999 * 109.46885 * 300.00085 * 1 2 3 27 27 H 1.09006 * 109.46927 * 60.00128 * 1 2 3 28 28 H 1.08998 * 109.47106 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47175 * 239.99665 * 2 1 3 30 30 H 1.08997 * 109.47018 * 120.00085 * 2 1 3 31 31 H 1.09002 * 109.38747 * 290.23642 * 5 3 2 32 32 H 1.09002 * 109.39361 * 50.04209 * 5 3 2 33 33 H 1.07997 * 119.82942 * 359.81412 * 7 6 5 34 34 H 1.07998 * 120.08384 * 179.97438 * 8 7 6 35 35 H 1.07992 * 120.06650 * 180.08925 * 9 8 7 36 36 H 1.08001 * 119.80896 * 180.02562 * 10 9 8 37 37 H 1.09003 * 109.31866 * 222.12494 * 12 11 6 38 38 H 1.09004 * 109.28020 * 102.75349 * 12 11 6 39 39 H 1.09002 * 109.47103 * 172.98588 * 14 13 12 40 40 H 1.09005 * 109.46967 * 52.98798 * 14 13 12 41 41 H 1.08995 * 109.47802 * 59.99741 * 15 14 13 42 42 H 1.09005 * 109.47092 * 299.99946 * 15 14 13 43 43 H 1.09002 * 109.47399 * 59.99728 * 16 15 14 44 44 H 1.09005 * 109.46829 * 299.99841 * 16 15 14 45 45 H 0.97000 * 120.00210 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6152 1.9841 0.8452 5 6 3.5657 1.4479 0.1008 6 6 4.0924 2.8392 -0.1413 7 6 5.3906 3.1321 0.2485 8 6 5.9130 4.3930 0.0420 9 6 5.1381 5.3689 -0.5571 10 6 3.8457 5.0785 -0.9446 11 6 3.3183 3.8126 -0.7354 12 6 1.9001 3.5464 -1.1676 13 7 1.6526 2.1038 -1.2562 14 6 2.3625 1.5173 -2.4008 15 6 1.7594 2.0496 -3.7022 16 6 2.4984 1.4382 -4.8942 17 16 1.7845 2.0673 -6.4340 18 6 2.7953 1.2255 -7.6063 19 1 3.5746 0.5589 -7.2674 20 6 2.5907 1.4198 -8.9653 21 7 1.6380 2.2287 -9.3784 22 14 3.6618 0.5269 -10.2082 23 1 3.0384 -0.7760 -10.5533 24 1 3.7914 1.3540 -11.4347 25 1 5.0071 0.2926 -9.6246 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8637 1.1161 1.0954 32 1 3.9801 0.7706 -0.6459 33 1 5.9959 2.3699 0.7165 34 1 6.9244 4.6167 0.3477 35 1 5.5435 6.3562 -0.7218 36 1 3.2414 5.8414 -1.4129 37 1 1.7288 4.0020 -2.1429 38 1 1.2146 3.9857 -0.4428 39 1 2.2643 0.4321 -2.3719 40 1 3.4172 1.7881 -2.3516 41 1 1.8576 3.1347 -3.7311 42 1 0.7047 1.7788 -3.7513 43 1 2.3998 0.3530 -4.8652 44 1 3.5533 1.7086 -4.8453 45 1 1.4947 2.3643 -10.3282 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185786311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:04 Heat of formation + Delta-G solvation = 5.355155 kcal Electronic energy + Delta-G solvation = -22691.072367 eV Core-core repulsion = 19605.363876 eV Total energy + Delta-G solvation = -3085.708492 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.76094 -37.89071 -34.36722 -32.95645 -32.39925 -32.25104 -30.46516 -28.73592 -26.54708 -25.49398 -24.24149 -23.75470 -22.31367 -21.29870 -21.09970 -18.78560 -17.45356 -16.66893 -16.15157 -15.61650 -15.54332 -14.98892 -14.78154 -14.62253 -14.06727 -13.88186 -13.79800 -13.42312 -13.38463 -13.11899 -12.85680 -12.54205 -12.11472 -12.03845 -11.67966 -11.54641 -11.46947 -11.35322 -11.27281 -11.19637 -11.04213 -10.85699 -10.74211 -10.59075 -10.48325 -10.12813 -9.49106 -9.02886 -8.86372 -8.64956 -8.29905 -8.25504 -6.48616 -6.19882 -3.89434 1.24673 1.27305 3.23376 3.24118 3.30771 3.57141 3.63503 3.94053 4.25801 4.42550 4.68366 4.72777 4.80976 4.94086 4.98115 5.10644 5.14673 5.16353 5.27360 5.31345 5.39145 5.41758 5.46896 5.52366 5.57622 5.65030 5.69618 5.79833 5.83211 5.84306 5.90288 5.93132 5.97456 6.03376 6.10559 6.21965 6.33313 6.37346 6.40994 6.41223 6.52193 6.65449 6.80528 6.90836 7.08866 7.13607 7.63423 8.39645 9.26465 10.88339 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.014178 B = 0.003459 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.394922 B = 8093.432597 C = 9148.591485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.084 3.916 4 H 0.083 0.917 5 C -0.114 4.114 6 C -0.077 4.077 7 C -0.120 4.120 8 C -0.123 4.123 9 C -0.123 4.123 10 C -0.112 4.112 11 C -0.106 4.106 12 C 0.085 3.915 13 N -0.516 5.516 14 C 0.052 3.948 15 C -0.092 4.092 16 C -0.111 4.111 17 S -0.132 6.132 18 C -0.516 4.516 19 H 0.071 0.929 20 C 0.071 3.929 21 N -0.870 5.870 22 Si 0.917 3.083 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.038 0.962 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.404 1.271 22.900 23.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.025 4.025 4 H 0.101 0.899 5 C -0.152 4.152 6 C -0.078 4.078 7 C -0.139 4.139 8 C -0.142 4.142 9 C -0.141 4.141 10 C -0.130 4.130 11 C -0.108 4.108 12 C -0.043 4.043 13 N -0.237 5.237 14 C -0.077 4.077 15 C -0.131 4.131 16 C -0.260 4.260 17 S 0.096 5.904 18 C -0.664 4.664 19 H 0.089 0.911 20 C -0.137 4.137 21 N -0.506 5.506 22 Si 0.743 3.257 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.056 0.944 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.915 1.985 22.481 22.649 hybrid contribution 2.833 -1.178 -0.535 3.115 sum 4.748 0.807 21.946 22.468 Atomic orbital electron populations 1.21648 0.94935 1.00933 1.02597 1.21573 0.97119 0.94767 1.01821 1.21788 0.91917 0.95912 0.92890 0.89901 1.21185 0.97774 0.93695 1.02573 1.19543 0.94145 0.95357 0.98711 1.21059 0.95007 0.96895 1.00892 1.21061 0.99682 0.93573 0.99838 1.21090 0.94493 0.99364 0.99114 1.21122 0.95756 0.96311 0.99853 1.20441 0.97899 0.93754 0.98708 1.21248 0.90630 0.89766 1.02650 1.62629 1.56220 1.02215 1.02635 1.22290 0.95925 0.99553 0.89946 1.21264 1.00345 1.00256 0.91190 1.23217 1.01675 1.02138 0.98992 1.84602 1.48623 1.61986 0.95164 1.22696 1.20351 1.30974 0.92363 0.91055 1.25002 0.95702 0.95343 0.97693 1.70025 1.30142 1.34822 1.15583 0.86186 0.80225 0.79331 0.79918 1.20264 1.20764 1.19730 0.93374 0.91099 0.93461 0.91527 0.91994 0.90536 0.90163 0.86430 0.86308 0.86166 0.85892 0.88657 0.89561 0.90646 0.94353 0.91816 0.90853 0.92260 0.92527 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.80 37.16 0.36 -1.01 16 2 C -0.12 -1.07 5.36 -26.73 -0.14 -1.22 16 3 C 0.08 0.84 2.19 -67.62 -0.15 0.70 16 4 H 0.08 0.82 8.05 -51.93 -0.42 0.40 16 5 C -0.11 -1.14 4.48 -27.92 -0.13 -1.27 16 6 C -0.08 -0.89 5.05 -104.60 -0.53 -1.42 16 7 C -0.12 -1.30 9.66 -39.49 -0.38 -1.68 16 8 C -0.12 -1.28 10.05 -39.64 -0.40 -1.68 16 9 C -0.12 -1.31 10.05 -39.65 -0.40 -1.70 16 10 C -0.11 -1.27 9.65 -39.48 -0.38 -1.66 16 11 C -0.11 -1.27 5.19 -104.63 -0.54 -1.81 16 12 C 0.09 0.98 5.43 -5.16 -0.03 0.96 16 13 N -0.52 -6.13 4.22 -228.21 -0.96 -7.09 16 14 C 0.05 0.71 3.81 -3.83 -0.01 0.70 16 15 C -0.09 -1.54 5.18 -26.73 -0.14 -1.67 16 16 C -0.11 -2.30 5.67 37.16 0.21 -2.08 16 17 S -0.13 -3.51 21.44 -107.50 -2.30 -5.81 16 18 C -0.52 -15.02 9.50 30.94 0.29 -14.73 16 19 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 20 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 21 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 22 Si 0.92 21.79 29.55 -169.99 -5.02 16.76 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.79 7.76 -51.93 -0.40 0.39 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.68 6.25 -51.93 -0.32 0.36 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.86 7.03 -51.93 -0.37 0.49 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.10 1.18 6.09 -51.93 -0.32 0.86 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.01 6.10 -51.93 -0.32 0.70 16 40 H 0.04 0.56 5.91 -51.93 -0.31 0.26 16 41 H 0.06 1.08 6.39 -51.93 -0.33 0.75 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.06 1.21 8.14 -51.91 -0.42 0.79 16 44 H 0.06 1.18 8.14 -51.91 -0.42 0.76 16 45 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 363.37 15.07 5.48 5.48 Total: -1.00 -31.30 363.37 -11.94 -43.24 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -7.40 Total: 0.58 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: -2.46 Total: -27.62 kcal Atomic # 7 Polarization: -32.39 SS G_CDS: -0.23 Total: -32.62 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -2.30 Total: -5.81 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.30 -11.94 -43.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185786311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.591 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds