Wall clock time and date at job start Tue Mar 31 2020 08:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53008 * 109.46849 * 2 1 4 4 H 1.08998 * 109.47073 * 54.99961 * 3 2 1 5 5 C 1.50703 * 109.46576 * 175.00007 * 3 2 1 6 6 H 1.07997 * 119.99507 * 114.30059 * 5 3 2 7 7 C 1.37869 * 119.99963 * 294.29621 * 5 3 2 8 8 N 1.31515 * 119.99829 * 180.02562 * 7 5 3 9 9 Si 1.86795 * 120.00410 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.47199 * 90.00134 * 9 7 5 11 11 H 1.48497 * 109.47489 * 210.00323 * 9 7 5 12 12 H 1.48503 * 109.46984 * 330.00171 * 9 7 5 13 13 N 1.46502 * 109.47008 * 295.00082 * 3 2 1 14 14 C 1.34771 * 119.99973 * 92.22073 * 13 3 2 15 15 O 1.21279 * 120.00114 * 355.02643 * 14 13 3 16 16 C 1.50708 * 119.99909 * 175.01749 * 14 13 3 17 17 C 1.53001 * 115.54483 * 63.97819 * 16 14 13 18 18 C 1.50704 * 109.47139 * 40.59005 * 17 16 14 19 19 C 1.38218 * 120.01324 * 257.97898 * 18 17 16 20 20 C 1.38220 * 120.02524 * 179.97438 * 19 18 17 21 21 C 1.38265 * 120.05459 * 359.97438 * 20 19 18 22 22 C 1.38185 * 120.02518 * 0.02562 * 21 20 19 23 23 C 1.38438 * 120.01182 * 77.95929 * 18 17 16 24 24 F 1.35098 * 120.02799 * 0.04874 * 23 18 17 25 25 C 1.52995 * 117.51878 * 209.67865 * 16 14 13 26 26 C 1.52997 * 60.00098 * 107.48447 * 25 16 14 27 27 H 1.08997 * 109.46741 * 300.00210 * 1 2 3 28 28 H 1.08998 * 109.47106 * 60.00166 * 1 2 3 29 29 H 1.08996 * 109.46559 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46949 * 240.00183 * 2 1 3 31 31 H 1.08998 * 109.47106 * 119.99834 * 2 1 3 32 32 H 0.96997 * 120.00258 * 179.97438 * 8 7 5 33 33 H 0.96998 * 119.99753 * 272.22194 * 13 3 2 34 34 H 1.08997 * 109.47155 * 280.59274 * 17 16 14 35 35 H 1.08996 * 109.46880 * 160.58521 * 17 16 14 36 36 H 1.08003 * 119.98652 * 359.97438 * 19 18 17 37 37 H 1.08001 * 119.97662 * 180.02562 * 20 19 18 38 38 H 1.08002 * 119.98982 * 180.27909 * 21 20 19 39 39 H 1.07990 * 120.01376 * 179.97438 * 22 21 20 40 40 H 1.08998 * 117.50016 * 214.97501 * 25 16 14 41 41 H 1.09003 * 117.50138 * 359.97438 * 25 16 14 42 42 H 1.09005 * 117.49825 * 252.51634 * 26 25 16 43 43 H 1.08998 * 117.50316 * 107.49066 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1506 1.8049 -0.6922 7 6 4.1390 0.9857 1.2788 8 7 5.4496 0.9877 1.3871 9 14 3.0863 0.3614 2.6900 10 1 2.8537 -1.0962 2.5269 11 1 3.7849 0.6103 3.9766 12 1 1.7833 1.0739 2.6884 13 7 1.6524 2.0976 -1.2518 14 6 0.4978 2.7892 -1.3210 15 8 -0.2633 2.7947 -0.3768 16 6 0.1525 3.5559 -2.5717 17 6 -0.0522 2.7090 -3.8294 18 6 -0.8136 1.4579 -3.4741 19 6 -0.1445 0.2559 -3.3399 20 6 -0.8425 -0.8915 -3.0136 21 6 -2.2106 -0.8385 -2.8204 22 6 -2.8817 0.3620 -2.9540 23 6 -2.1835 1.5121 -3.2816 24 9 -2.8387 2.6863 -3.4131 25 6 -0.7096 4.8102 -2.4166 26 6 0.7785 4.9409 -2.7469 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 5.8697 0.6653 2.1998 33 1 2.2268 2.0334 -2.0308 34 1 0.9175 2.4379 -4.2467 35 1 -0.6172 3.2815 -4.5649 36 1 0.9242 0.2134 -3.4902 37 1 -0.3188 -1.8302 -2.9085 38 1 -2.7543 -1.7349 -2.5610 39 1 -3.9503 0.4031 -2.8035 40 1 -1.4228 5.0322 -3.2105 41 1 -1.0277 5.0810 -1.4098 42 1 1.4399 5.2977 -1.9572 43 1 1.0446 5.2488 -3.7580 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188801715.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:11 Heat of formation + Delta-G solvation = -58.101392 kcal Electronic energy + Delta-G solvation = -26562.763596 eV Core-core repulsion = 22908.090246 eV Total energy + Delta-G solvation = -3654.673350 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.79278 -41.34047 -39.69126 -38.16350 -36.76097 -34.37182 -33.45100 -32.96844 -31.36840 -29.48139 -28.15379 -25.25521 -24.04105 -23.72081 -23.28441 -22.66894 -21.68215 -20.66016 -18.89831 -18.44120 -17.68438 -17.35267 -17.21517 -16.79204 -16.50064 -16.23146 -16.13387 -15.39682 -15.09612 -15.01562 -14.85704 -14.36790 -14.18148 -14.04860 -13.75079 -13.71158 -13.61425 -13.48714 -13.09980 -12.83591 -12.64517 -12.44704 -12.39153 -12.35867 -11.99933 -11.82249 -11.50126 -11.44717 -11.22898 -10.94557 -10.84129 -10.53281 -9.82882 -9.68700 -9.49212 -8.36966 -6.40822 0.27817 0.34121 1.24868 1.32800 1.42829 1.79850 2.25957 2.42829 2.68822 2.81935 2.99128 3.41128 3.57503 3.80245 3.85356 3.90023 3.98313 4.16436 4.25726 4.31757 4.37629 4.41902 4.47078 4.54921 4.72674 4.74119 4.76782 4.84990 4.96004 4.98849 5.06313 5.09549 5.19395 5.19971 5.21602 5.29223 5.31455 5.45765 5.48010 5.55892 5.56892 5.73625 6.03789 6.18444 6.62058 6.95122 7.22654 7.54563 8.78164 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016308 B = 0.005805 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.567632 B = 4822.255060 C = 5726.977196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.249 3.751 4 H 0.016 0.984 5 C -0.525 4.525 6 H 0.058 0.942 7 C 0.033 3.967 8 N -0.933 5.933 9 Si 0.924 3.076 10 H -0.257 1.257 11 H -0.292 1.292 12 H -0.267 1.267 13 N -0.690 5.690 14 C 0.546 3.454 15 O -0.588 6.588 16 C -0.164 4.164 17 C -0.031 4.031 18 C -0.129 4.129 19 C -0.088 4.088 20 C -0.129 4.129 21 C -0.095 4.095 22 C -0.167 4.167 23 C 0.085 3.915 24 F -0.146 7.146 25 C -0.145 4.145 26 C -0.139 4.139 27 H 0.019 0.981 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.039 0.961 32 H 0.269 0.731 33 H 0.404 0.596 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.139 0.861 37 H 0.145 0.855 38 H 0.154 0.846 39 H 0.143 0.857 40 H 0.121 0.879 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.977 -0.827 -14.263 19.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.145 3.855 4 H 0.034 0.966 5 C -0.564 4.564 6 H 0.076 0.924 7 C -0.166 4.166 8 N -0.572 5.572 9 Si 0.752 3.248 10 H -0.182 1.182 11 H -0.219 1.219 12 H -0.192 1.192 13 N -0.338 5.338 14 C 0.332 3.668 15 O -0.469 6.469 16 C -0.167 4.167 17 C -0.068 4.068 18 C -0.130 4.130 19 C -0.106 4.106 20 C -0.147 4.147 21 C -0.112 4.112 22 C -0.186 4.186 23 C 0.066 3.934 24 F -0.124 7.124 25 C -0.182 4.182 26 C -0.176 4.176 27 H 0.038 0.962 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.239 0.761 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.157 0.843 37 H 0.163 0.837 38 H 0.171 0.829 39 H 0.161 0.839 40 H 0.139 0.861 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.356 -0.819 -13.467 19.701 hybrid contribution 0.112 -0.033 1.033 1.040 sum -14.244 -0.852 -12.434 18.926 Atomic orbital electron populations 1.21847 0.95653 1.00464 1.01621 1.22073 0.95349 0.98129 1.01076 1.18792 0.92988 0.89927 0.83835 0.96612 1.21304 0.90374 1.42416 1.02276 0.92366 1.25442 0.95561 0.95427 1.00201 1.69969 1.10179 1.48207 1.28868 0.86185 0.79391 0.80057 0.79212 1.18189 1.21867 1.19162 1.45830 1.21380 1.51830 1.14711 1.19871 0.80670 0.78349 0.87862 1.90631 1.50761 1.64880 1.40613 1.21453 1.09807 0.90733 0.94728 1.20088 1.01456 0.91707 0.93581 1.19977 0.92096 0.97168 1.03745 1.21177 1.00625 0.91404 0.97419 1.21461 0.94622 0.99290 0.99282 1.21288 0.94651 0.97643 0.97652 1.21366 1.01595 0.92147 1.03460 1.17801 0.90666 0.81652 1.03246 1.91434 1.81247 1.46258 1.93501 1.23012 0.94583 0.97487 1.03127 1.23177 0.95524 0.94147 1.04795 0.96152 0.91199 0.92353 0.90736 0.94245 0.92212 0.76142 0.87646 0.88196 0.84307 0.83727 0.82853 0.83908 0.86063 0.90508 0.89635 0.84429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 8.25 71.99 0.59 -4.69 16 2 C -0.13 -5.31 5.19 30.60 0.16 -5.16 16 3 C 0.25 11.60 1.79 44.25 0.08 11.68 16 4 H 0.02 0.86 6.08 -2.39 -0.01 0.85 16 5 C -0.53 -28.15 9.26 25.60 0.24 -27.92 16 6 H 0.06 3.30 8.03 -2.91 -0.02 3.28 16 7 C 0.03 1.87 5.45 84.65 0.46 2.34 16 8 N -0.93 -55.59 13.96 21.44 0.30 -55.29 16 9 Si 0.92 44.93 24.70 68.60 1.69 46.62 16 10 H -0.26 -11.65 6.86 99.48 0.68 -10.97 16 11 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 12 H -0.27 -13.21 6.38 99.48 0.63 -12.58 16 13 N -0.69 -26.29 4.86 -446.08 -2.17 -28.46 16 14 C 0.55 20.32 4.70 87.66 0.41 20.73 16 15 O -0.59 -26.99 14.38 -3.03 -0.04 -27.03 16 16 C -0.16 -4.49 2.17 -52.93 -0.11 -4.60 16 17 C -0.03 -0.67 5.18 29.85 0.15 -0.52 16 18 C -0.13 -3.21 4.01 -19.82 -0.08 -3.29 16 19 C -0.09 -2.06 8.14 22.26 0.18 -1.88 16 20 C -0.13 -2.73 8.91 22.27 0.20 -2.53 16 21 C -0.09 -1.92 10.04 22.26 0.22 -1.70 16 22 C -0.17 -3.89 10.03 22.32 0.22 -3.67 16 23 C 0.09 2.27 7.22 22.38 0.16 2.44 16 24 F -0.15 -4.04 16.69 44.97 0.75 -3.29 16 25 C -0.14 -3.72 9.69 30.59 0.30 -3.42 16 26 C -0.14 -3.17 9.95 30.59 0.30 -2.87 16 27 H 0.02 0.85 8.00 -2.39 -0.02 0.83 16 28 H 0.07 2.55 3.58 -2.39 -0.01 2.54 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 31 H 0.04 1.75 4.04 -2.39 -0.01 1.74 16 32 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 33 H 0.40 13.44 8.65 -92.71 -0.80 12.64 16 34 H 0.11 1.82 7.98 -2.39 -0.02 1.80 16 35 H 0.10 1.81 7.82 -2.39 -0.02 1.79 16 36 H 0.14 2.95 8.02 -2.91 -0.02 2.92 16 37 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 38 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.14 2.80 8.06 -2.92 -0.02 2.78 16 40 H 0.12 2.55 8.09 -2.39 -0.02 2.53 16 41 H 0.08 2.36 7.97 -2.39 -0.02 2.34 16 42 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 43 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -69.51 348.23 4.16 -65.35 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.13 Total: 27.16 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 3.49 Total: -25.06 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -1.87 Total: -83.75 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.04 Total: -27.03 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.75 Total: -3.29 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.69 Total: 46.62 kcal Total: -69.51 4.16 -65.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188801715.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.249 kcal (2) G-P(sol) polarization free energy of solvation -69.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds