Wall clock time and date at job start Tue Mar 31 2020 08:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47618 * 2 1 4 4 C 1.52997 * 109.47057 * 239.99943 * 2 1 3 5 5 N 1.46501 * 109.47145 * 119.99855 * 2 1 3 6 6 C 1.34818 * 126.59501 * 74.99854 * 5 2 1 7 7 C 1.36589 * 106.84079 * 179.97438 * 6 5 2 8 8 C 1.47524 * 125.77224 * 179.73895 * 7 6 5 9 9 O 1.21599 * 119.99704 * 353.99207 * 8 7 6 10 10 N 1.34778 * 120.00253 * 173.99969 * 8 7 6 11 11 C 1.46495 * 119.99914 * 4.19999 * 10 8 7 12 12 C 1.50705 * 109.47016 * 83.50051 * 11 10 8 13 13 H 1.08007 * 119.99726 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00039 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00001 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99769 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47397 * 60.00274 * 16 14 12 18 18 H 1.48504 * 109.46761 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47015 * 300.00127 * 16 14 12 20 20 C 1.46503 * 119.99979 * 184.20580 * 10 8 7 21 21 C 1.52998 * 109.47115 * 94.90926 * 20 10 8 22 22 C 1.47195 * 109.47123 * 179.97438 * 21 20 10 23 23 N 9.08799 * 141.93813 * 222.46695 * 5 1 2 24 24 N 1.34406 * 108.46211 * 359.97438 * 7 6 5 25 25 N 1.28763 * 109.51922 * 0.02562 * 24 7 6 26 26 H 1.09006 * 109.46761 * 300.00365 * 1 2 3 27 27 H 1.08996 * 109.46992 * 59.99568 * 1 2 3 28 28 H 1.08994 * 109.47411 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47572 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46927 * 300.00723 * 3 2 1 31 31 H 1.08996 * 109.46909 * 59.99697 * 3 2 1 32 32 H 1.09004 * 109.46950 * 300.00051 * 4 2 1 33 33 H 1.09000 * 109.47307 * 59.99827 * 4 2 1 34 34 H 1.09000 * 109.47578 * 180.02562 * 4 2 1 35 35 H 1.08000 * 126.57525 * 359.96280 * 6 5 2 36 36 H 1.08998 * 109.47136 * 203.50231 * 11 10 8 37 37 H 1.09001 * 109.47438 * 323.50259 * 11 10 8 38 38 H 0.96996 * 119.99790 * 180.02562 * 15 14 12 39 39 H 1.08998 * 109.46871 * 214.90917 * 20 10 8 40 40 H 1.09003 * 109.46979 * 334.91357 * 20 10 8 41 41 H 1.09003 * 109.47588 * 300.00412 * 21 20 10 42 42 H 1.09007 * 109.47312 * 60.00225 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0221 -2.0216 1.4106 7 6 2.5638 -2.2215 2.6484 8 6 2.7606 -3.5290 3.3027 9 8 2.3302 -4.5402 2.7823 10 7 3.4174 -3.6027 4.4773 11 6 3.8551 -2.3771 5.1500 12 6 2.7129 -1.8093 5.9526 13 1 1.7567 -2.3115 5.9611 14 6 2.8889 -0.6493 6.6769 15 7 4.0533 -0.0382 6.6669 16 14 1.4733 0.0541 7.6723 17 1 1.0395 -0.9399 8.6867 18 1 1.9170 1.2965 8.3540 19 1 0.3380 0.3651 6.7669 20 6 3.6936 -4.9085 5.0814 21 6 5.0975 -5.3680 4.6829 22 6 5.3753 -6.6797 5.2903 23 7 5.5891 -7.6925 5.7585 24 7 2.8824 -1.0253 3.1718 25 7 2.5725 -0.0944 2.3378 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6766 -1.7489 -1.2492 33 1 1.6766 -0.2075 -2.1392 34 1 3.1299 -0.7217 -1.2491 35 1 1.6650 -2.7835 0.7335 36 1 4.6882 -2.6052 5.8147 37 1 4.1736 -1.6478 4.4052 38 1 4.1772 0.7777 7.1767 39 1 3.6324 -4.8270 6.1666 40 1 2.9603 -5.6341 4.7294 41 1 5.1589 -5.4494 3.5976 42 1 5.8309 -4.6424 5.0348 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189929849.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:57 Heat of formation + Delta-G solvation = 95.373046 kcal Electronic energy + Delta-G solvation = -25309.251653 eV Core-core repulsion = 21713.446166 eV Total energy + Delta-G solvation = -3595.805486 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.72160 -38.98775 -37.22976 -36.60161 -35.15837 -32.70238 -31.68632 -31.17810 -29.90341 -27.74380 -27.62116 -27.03217 -24.63217 -23.23453 -23.01405 -21.60007 -20.13949 -18.57286 -17.45720 -16.88624 -16.31997 -15.97515 -15.58060 -15.51370 -14.63734 -14.41444 -14.37650 -14.27943 -14.18838 -13.77252 -13.40539 -12.88623 -12.80162 -12.60144 -12.46880 -12.30142 -12.23100 -12.08267 -12.03805 -11.77285 -11.66400 -11.57620 -11.45495 -11.05884 -10.88050 -10.78185 -10.59966 -10.11347 -9.84578 -9.77829 -9.57535 -9.34023 -8.72054 -8.29304 -7.76622 -5.95661 -3.96971 1.64116 2.37641 2.48181 2.90650 2.98087 3.36532 3.40643 3.43653 3.70416 3.97020 4.21348 4.42407 4.46498 4.51132 4.57292 4.74922 5.13569 5.16989 5.20521 5.32588 5.34548 5.38022 5.38999 5.41458 5.46489 5.52209 5.56673 5.68122 5.71960 5.82313 5.90791 6.02979 6.13104 6.29109 6.39904 6.74272 6.85260 7.49110 7.68313 7.74608 7.95106 8.23704 8.30043 8.64083 8.91634 9.05275 9.65934 11.12882 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.009942 B = 0.005596 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.766263 B = 5002.403639 C = 7175.868630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.172 3.828 3 C -0.147 4.147 4 C -0.160 4.160 5 N -0.365 5.365 6 C 0.075 3.925 7 C -0.092 4.092 8 C 0.604 3.396 9 O -0.574 6.574 10 N -0.581 5.581 11 C 0.227 3.773 12 C -0.516 4.516 13 H 0.052 0.948 14 C 0.074 3.926 15 N -0.886 5.886 16 Si 0.887 3.113 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.280 1.280 20 C 0.124 3.876 21 C -0.046 4.046 22 C 0.222 3.778 23 N -0.451 5.451 24 N -0.134 5.134 25 N -0.080 5.080 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.191 0.809 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.261 0.739 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.154 1.140 -16.111 16.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.089 3.911 3 C -0.205 4.205 4 C -0.219 4.219 5 N -0.151 5.151 6 C -0.082 4.082 7 C -0.231 4.231 8 C 0.391 3.609 9 O -0.455 6.455 10 N -0.310 5.310 11 C 0.107 3.893 12 C -0.555 4.555 13 H 0.070 0.930 14 C -0.128 4.128 15 N -0.525 5.525 16 Si 0.715 3.285 17 H -0.205 1.205 18 H -0.213 1.213 19 H -0.206 1.206 20 C -0.002 4.002 21 C -0.087 4.087 22 C -0.096 4.096 23 N -0.129 5.129 24 N -0.007 5.007 25 N -0.060 5.060 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.208 0.792 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.126 0.874 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.556 0.647 -14.941 15.172 hybrid contribution -1.273 0.140 -0.027 1.281 sum -3.828 0.787 -14.968 15.470 Atomic orbital electron populations 1.22272 0.92511 1.03423 1.03674 1.20890 0.94812 0.94034 0.81395 1.21956 1.02547 0.92529 1.03434 1.22268 1.02586 1.01122 0.95895 1.50863 1.43487 1.05094 1.15647 1.23013 0.99868 0.86933 0.98376 1.21372 1.12502 0.94377 0.94815 1.16837 0.77727 0.85609 0.80736 1.90700 1.52800 1.35791 1.66175 1.48100 1.54354 1.08377 1.20130 1.19977 0.95635 0.79854 0.93794 1.21182 0.97511 1.08762 1.28015 0.92982 1.24729 0.95312 0.96327 0.96465 1.69888 1.22585 1.18556 1.41443 0.86752 0.83036 0.78435 0.80256 1.20494 1.21330 1.20572 1.21168 0.93331 0.86246 0.99441 1.19789 1.01018 0.86440 1.01445 1.29112 0.92827 0.94567 0.93049 1.81176 1.09315 1.12431 1.09980 1.75386 1.09871 0.97139 1.18342 1.82152 1.15948 1.18427 0.89430 0.91222 0.90200 0.91567 0.91254 0.90742 0.90561 0.91352 0.89955 0.91247 0.79230 0.94951 0.90761 0.92911 0.89309 0.89594 0.87402 0.86791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 8.74 37.16 0.32 -1.05 16 2 C 0.17 1.71 1.25 -131.82 -0.16 1.54 16 3 C -0.15 -1.40 8.11 37.16 0.30 -1.09 16 4 C -0.16 -1.16 8.30 37.16 0.31 -0.85 16 5 N -0.37 -5.32 3.44 -48.36 -0.17 -5.49 16 6 C 0.07 1.13 10.43 -16.84 -0.18 0.96 16 7 C -0.09 -1.78 6.68 -83.55 -0.56 -2.34 16 8 C 0.60 12.01 7.61 -12.47 -0.09 11.92 16 9 O -0.57 -11.63 16.36 5.28 0.09 -11.54 16 10 N -0.58 -11.40 2.48 -176.29 -0.44 -11.84 16 11 C 0.23 5.22 4.79 -5.19 -0.02 5.19 16 12 C -0.52 -13.43 8.39 -34.44 -0.29 -13.72 16 13 H 0.05 1.41 7.81 -52.48 -0.41 1.00 16 14 C 0.07 2.00 5.46 -17.82 -0.10 1.91 16 15 N -0.89 -24.69 13.29 55.43 0.74 -23.96 16 16 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 C 0.12 2.00 5.42 -4.04 -0.02 1.97 16 21 C -0.05 -0.59 6.02 -29.52 -0.18 -0.77 16 22 C 0.22 3.19 15.43 -20.76 -0.32 2.87 16 23 N -0.45 -7.52 18.54 42.16 0.78 -6.74 16 24 N -0.13 -2.91 8.09 32.85 0.27 -2.65 16 25 N -0.08 -1.55 12.91 60.35 0.78 -0.77 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.86 8.06 -51.93 -0.42 0.44 16 32 H 0.07 0.46 7.44 -51.93 -0.39 0.07 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.19 2.22 7.63 -52.49 -0.40 1.82 16 36 H 0.03 0.76 8.02 -51.93 -0.42 0.34 16 37 H 0.08 1.84 5.29 -51.93 -0.27 1.56 16 38 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.09 1.44 8.11 -51.93 -0.42 1.02 16 40 H 0.09 1.39 7.23 -51.93 -0.38 1.02 16 41 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 42 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 363.76 15.07 5.48 5.48 Total: -1.00 -32.51 363.76 -4.53 -37.04 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -6.04 Total: -2.46 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -0.99 Total: 6.54 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 1.96 Total: -51.44 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.51 -4.53 -37.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189929849.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.412 kcal (2) G-P(sol) polarization free energy of solvation -32.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds