Wall clock time and date at job start Tue Mar 31 2020 08:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47618 * 2 1 4 4 C 1.52997 * 109.47057 * 239.99943 * 2 1 3 5 5 N 1.46501 * 109.47145 * 119.99855 * 2 1 3 6 6 C 1.34818 * 126.59501 * 74.99854 * 5 2 1 7 7 C 1.36589 * 106.84079 * 179.97438 * 6 5 2 8 8 C 1.47524 * 125.77224 * 179.73895 * 7 6 5 9 9 O 1.21599 * 119.99704 * 353.99207 * 8 7 6 10 10 N 1.34778 * 120.00253 * 173.99969 * 8 7 6 11 11 C 1.46495 * 119.99914 * 4.19999 * 10 8 7 12 12 C 1.50705 * 109.47016 * 83.50051 * 11 10 8 13 13 H 1.08007 * 119.99726 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00039 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00001 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99769 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47397 * 60.00274 * 16 14 12 18 18 H 1.48504 * 109.46761 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47015 * 300.00127 * 16 14 12 20 20 C 1.46503 * 119.99979 * 184.20580 * 10 8 7 21 21 C 1.52998 * 109.47115 * 94.90926 * 20 10 8 22 22 C 1.47195 * 109.47123 * 179.97438 * 21 20 10 23 23 N 9.08799 * 141.93813 * 222.46695 * 5 1 2 24 24 N 1.34406 * 108.46211 * 359.97438 * 7 6 5 25 25 N 1.28763 * 109.51922 * 0.02562 * 24 7 6 26 26 H 1.09006 * 109.46761 * 300.00365 * 1 2 3 27 27 H 1.08996 * 109.46992 * 59.99568 * 1 2 3 28 28 H 1.08994 * 109.47411 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47572 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46927 * 300.00723 * 3 2 1 31 31 H 1.08996 * 109.46909 * 59.99697 * 3 2 1 32 32 H 1.09004 * 109.46950 * 300.00051 * 4 2 1 33 33 H 1.09000 * 109.47307 * 59.99827 * 4 2 1 34 34 H 1.09000 * 109.47578 * 180.02562 * 4 2 1 35 35 H 1.08000 * 126.57525 * 359.96280 * 6 5 2 36 36 H 1.08998 * 109.47136 * 203.50231 * 11 10 8 37 37 H 1.09001 * 109.47438 * 323.50259 * 11 10 8 38 38 H 0.96996 * 119.99790 * 180.02562 * 15 14 12 39 39 H 1.08998 * 109.46871 * 214.90917 * 20 10 8 40 40 H 1.09003 * 109.46979 * 334.91357 * 20 10 8 41 41 H 1.09003 * 109.47588 * 300.00412 * 21 20 10 42 42 H 1.09007 * 109.47312 * 60.00225 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0221 -2.0216 1.4106 7 6 2.5638 -2.2215 2.6484 8 6 2.7606 -3.5290 3.3027 9 8 2.3302 -4.5402 2.7823 10 7 3.4174 -3.6027 4.4773 11 6 3.8551 -2.3771 5.1500 12 6 2.7129 -1.8093 5.9526 13 1 1.7567 -2.3115 5.9611 14 6 2.8889 -0.6493 6.6769 15 7 4.0533 -0.0382 6.6669 16 14 1.4733 0.0541 7.6723 17 1 1.0395 -0.9399 8.6867 18 1 1.9170 1.2965 8.3540 19 1 0.3380 0.3651 6.7669 20 6 3.6936 -4.9085 5.0814 21 6 5.0975 -5.3680 4.6829 22 6 5.3753 -6.6797 5.2903 23 7 5.5891 -7.6925 5.7585 24 7 2.8824 -1.0253 3.1718 25 7 2.5725 -0.0944 2.3378 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6766 -1.7489 -1.2492 33 1 1.6766 -0.2075 -2.1392 34 1 3.1299 -0.7217 -1.2491 35 1 1.6650 -2.7835 0.7335 36 1 4.6882 -2.6052 5.8147 37 1 4.1736 -1.6478 4.4052 38 1 4.1772 0.7777 7.1767 39 1 3.6324 -4.8270 6.1666 40 1 2.9603 -5.6341 4.7294 41 1 5.1589 -5.4494 3.5976 42 1 5.8309 -4.6424 5.0348 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189929849.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:57 Heat of formation + Delta-G solvation = 75.221921 kcal Electronic energy + Delta-G solvation = -25310.125471 eV Core-core repulsion = 21713.446166 eV Total energy + Delta-G solvation = -3596.679305 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.02882 -40.46788 -38.16054 -37.87450 -36.70782 -34.56647 -32.97762 -32.55243 -31.20780 -28.90618 -28.37603 -28.35074 -25.92330 -24.94137 -24.40580 -22.99341 -21.30174 -19.92167 -18.79092 -18.26912 -17.93002 -17.32516 -16.98272 -16.78903 -16.24939 -15.82258 -15.66641 -15.46100 -15.05998 -14.87722 -14.72334 -14.30734 -14.10766 -13.63340 -13.59434 -13.43653 -13.37245 -13.27454 -13.10730 -13.05724 -12.82793 -12.72059 -12.67701 -12.62879 -12.32958 -12.10474 -11.93015 -11.75235 -11.60736 -11.26536 -11.01743 -10.92284 -10.32774 -10.08062 -9.40284 -8.01077 -6.06282 0.40166 0.99424 1.32137 1.41996 1.43730 1.49257 1.69185 1.81219 2.27530 2.47213 2.55538 3.17686 3.33683 3.41492 3.53291 3.74391 3.83915 3.86152 4.12528 4.16503 4.21208 4.42846 4.58155 4.62336 4.64181 4.69666 4.73653 4.83138 4.85327 4.88183 4.97650 5.04515 5.10705 5.12616 5.25666 5.34610 5.60333 5.79020 5.92904 5.97119 6.31658 6.56672 6.57598 6.97539 7.22843 7.45356 7.59421 9.05986 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.009942 B = 0.005596 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.766263 B = 5002.403639 C = 7175.868630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.157 3.843 3 C -0.146 4.146 4 C -0.155 4.155 5 N -0.347 5.347 6 C 0.099 3.901 7 C -0.127 4.127 8 C 0.603 3.397 9 O -0.580 6.580 10 N -0.584 5.584 11 C 0.243 3.757 12 C -0.513 4.513 13 H 0.037 0.963 14 C 0.034 3.966 15 N -0.912 5.912 16 Si 0.933 3.067 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.287 1.287 20 C 0.121 3.879 21 C -0.030 4.030 22 C 0.247 3.753 23 N -0.489 5.489 24 N -0.180 5.180 25 N -0.113 5.113 26 H 0.045 0.955 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.112 0.888 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.115 0.885 34 H 0.059 0.941 35 H 0.229 0.771 36 H 0.027 0.973 37 H 0.062 0.938 38 H 0.260 0.740 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.126 0.874 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.147 0.903 -18.528 19.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.076 3.924 3 C -0.203 4.203 4 C -0.213 4.213 5 N -0.133 5.133 6 C -0.060 4.060 7 C -0.267 4.267 8 C 0.391 3.609 9 O -0.461 6.461 10 N -0.312 5.312 11 C 0.122 3.878 12 C -0.552 4.552 13 H 0.055 0.945 14 C -0.166 4.166 15 N -0.552 5.552 16 Si 0.761 3.239 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.213 1.213 20 C -0.004 4.004 21 C -0.071 4.071 22 C -0.070 4.070 23 N -0.167 5.167 24 N -0.051 5.051 25 N -0.092 5.092 26 H 0.064 0.936 27 H 0.134 0.866 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.130 0.870 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.133 0.867 34 H 0.079 0.921 35 H 0.246 0.754 36 H 0.045 0.955 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.144 0.856 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.555 0.421 -17.359 17.724 hybrid contribution -1.055 0.242 0.561 1.219 sum -4.609 0.663 -16.798 17.432 Atomic orbital electron populations 1.22297 0.90964 1.03989 1.04255 1.21522 0.95974 0.94241 0.80643 1.21986 1.01721 0.92576 1.04052 1.22300 1.02056 1.01795 0.95181 1.51270 1.41303 1.05131 1.15559 1.23501 0.97529 0.87680 0.97265 1.21602 1.14709 0.93749 0.96610 1.16968 0.77362 0.85950 0.80651 1.90680 1.53116 1.36026 1.66328 1.47978 1.54570 1.08481 1.20214 1.19553 0.94301 0.80903 0.93022 1.21347 0.97598 1.08535 1.27769 0.94488 1.25272 0.96934 0.96848 0.97571 1.69969 1.23842 1.18919 1.42448 0.86019 0.80675 0.78103 0.79146 1.19789 1.20897 1.21323 1.21272 0.95219 0.84771 0.99134 1.19690 0.99241 0.85802 1.02376 1.29160 0.91694 0.94203 0.91961 1.81206 1.10554 1.13664 1.11287 1.75332 1.11479 0.98248 1.20086 1.82030 1.17479 1.18694 0.90987 0.93622 0.86640 0.91010 0.92573 0.86990 0.93036 0.90277 0.86691 0.92144 0.75428 0.95502 0.92010 0.93097 0.89715 0.89525 0.85616 0.85498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 8.74 71.98 0.63 -1.59 16 2 C 0.16 2.75 1.25 3.60 0.00 2.75 16 3 C -0.15 -2.55 8.11 71.98 0.58 -1.96 16 4 C -0.16 -1.65 8.30 71.98 0.60 -1.05 16 5 N -0.35 -9.76 3.44 -306.91 -1.06 -10.81 16 6 C 0.10 2.83 10.43 83.85 0.87 3.71 16 7 C -0.13 -4.88 6.68 40.81 0.27 -4.60 16 8 C 0.60 23.71 7.61 86.69 0.66 24.37 16 9 O -0.58 -22.73 16.36 -4.03 -0.07 -22.79 16 10 N -0.58 -22.89 2.48 -829.92 -2.05 -24.94 16 11 C 0.24 11.38 4.79 85.64 0.41 11.79 16 12 C -0.51 -27.22 8.39 25.60 0.21 -27.01 16 13 H 0.04 2.03 7.81 -2.91 -0.02 2.01 16 14 C 0.03 1.84 5.46 84.66 0.46 2.30 16 15 N -0.91 -51.75 13.29 21.45 0.28 -51.46 16 16 Si 0.93 44.41 29.54 68.60 2.03 46.43 16 17 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 19 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 20 C 0.12 3.81 5.42 86.38 0.47 4.28 16 21 C -0.03 -0.74 6.02 28.79 0.17 -0.56 16 22 C 0.25 6.79 15.43 89.44 1.38 8.17 16 23 N -0.49 -15.90 18.54 20.00 0.37 -15.53 16 24 N -0.18 -7.96 8.09 -50.00 -0.40 -8.36 16 25 N -0.11 -4.44 12.91 37.02 0.48 -3.96 16 26 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.05 1.16 8.06 -2.39 -0.02 1.14 16 32 H 0.08 0.71 7.44 -2.39 -0.02 0.69 16 33 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.23 4.55 7.63 -2.91 -0.02 4.53 16 36 H 0.03 1.28 8.02 -2.39 -0.02 1.26 16 37 H 0.06 3.15 5.29 -2.39 -0.01 3.13 16 38 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 39 H 0.08 2.73 8.11 -2.39 -0.02 2.71 16 40 H 0.09 2.74 7.23 -2.39 -0.02 2.72 16 41 H 0.13 2.72 8.14 -2.39 -0.02 2.71 16 42 H 0.13 2.88 8.14 -2.38 -0.02 2.86 16 Total: -1.00 -72.44 363.76 7.34 -65.10 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: 1.03 Total: 5.74 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: 6.73 Total: 20.58 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -2.38 Total: -115.06 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.07 Total: -22.79 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -72.44 7.34 -65.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189929849.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.323 kcal (2) G-P(sol) polarization free energy of solvation -72.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds