Wall clock time and date at job start Tue Mar 31 2020 09:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47662 * 2 1 4 4 C 1.50705 * 109.46859 * 239.99604 * 2 1 3 5 5 H 1.08001 * 119.99861 * 240.00347 * 4 2 1 6 6 C 1.37874 * 119.99926 * 60.00543 * 4 2 1 7 7 N 1.31517 * 120.00115 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99961 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47087 * 60.00327 * 8 6 4 10 10 H 1.48502 * 109.47320 * 179.97438 * 8 6 4 11 11 H 1.48491 * 109.47161 * 300.00132 * 8 6 4 12 12 N 1.46502 * 109.46708 * 120.00275 * 2 1 3 13 13 C 1.34783 * 119.99648 * 274.99144 * 12 2 1 14 14 O 1.21276 * 119.99887 * 5.15473 * 13 12 2 15 15 C 1.50693 * 119.99748 * 185.15191 * 13 12 2 16 16 C 1.50700 * 110.01988 * 293.96005 * 15 13 12 17 17 C 1.38271 * 119.98675 * 354.87556 * 16 15 13 18 18 C 1.38222 * 120.05000 * 179.97438 * 17 16 15 19 19 C 1.38209 * 120.03005 * 359.78112 * 18 17 16 20 20 C 1.38441 * 119.97313 * 0.44965 * 19 18 17 21 21 F 1.35103 * 120.02997 * 179.81332 * 20 19 18 22 22 C 1.38177 * 119.99020 * 174.84720 * 16 15 13 23 23 C 1.54268 * 110.03534 * 55.35783 * 15 13 12 24 24 C 1.54961 * 104.16089 * 95.74963 * 23 15 13 25 25 C 1.54893 * 102.77713 * 37.89211 * 24 23 15 26 26 C 1.53880 * 110.03212 * 172.57076 * 15 13 12 27 27 H 1.09007 * 109.47054 * 300.00433 * 1 2 3 28 28 H 1.09004 * 109.46980 * 59.99854 * 1 2 3 29 29 H 1.08996 * 109.47662 * 180.02562 * 1 2 3 30 30 H 0.97000 * 120.00390 * 179.97438 * 7 6 4 31 31 H 0.96993 * 120.00392 * 95.00238 * 12 2 1 32 32 H 1.08000 * 119.97152 * 359.97438 * 17 16 15 33 33 H 1.08006 * 119.98410 * 180.02562 * 18 17 16 34 34 H 1.07999 * 120.01823 * 180.23017 * 19 18 17 35 35 H 1.08001 * 120.00927 * 0.02562 * 22 16 15 36 36 H 1.09003 * 110.48619 * 214.40496 * 23 15 13 37 37 H 1.09002 * 110.48081 * 337.04001 * 23 15 13 38 38 H 1.08993 * 110.72324 * 279.57407 * 24 23 15 39 39 H 1.09003 * 110.91967 * 156.29540 * 24 23 15 40 40 H 1.08992 * 110.48401 * 203.40069 * 25 24 23 41 41 H 1.08999 * 110.48674 * 80.75863 * 25 24 23 42 42 H 1.09002 * 110.03208 * 359.95505 * 26 15 13 43 43 H 1.09003 * 110.02838 * 121.32884 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5887 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.8278 -2.5200 -4.0081 10 1 1.8269 -0.4202 -5.2205 11 1 3.8073 -1.1193 -4.0077 12 7 2.0182 -0.6907 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.7715 1.1322 2.4365 15 6 2.7576 -0.6960 3.5566 16 6 1.8655 -1.8163 4.0258 17 6 0.6334 -2.0142 3.4304 18 6 -0.1856 -3.0417 3.8593 19 6 0.2281 -3.8754 4.8810 20 6 1.4595 -3.6754 5.4812 21 9 1.8635 -4.4873 6.4826 22 6 2.2794 -2.6458 5.0505 23 6 4.1536 -1.2465 3.1990 24 6 5.1298 -0.1385 3.6690 25 6 4.4775 0.3578 4.9833 26 6 2.9634 0.3239 4.6904 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.7088 1.1613 -3.4844 31 1 2.2489 -1.6318 1.1527 32 1 0.3107 -1.3654 2.6295 33 1 -1.1477 -3.1956 3.3932 34 1 -0.4104 -4.6805 5.2135 35 1 3.2419 -2.4911 5.5154 36 1 4.3457 -2.1763 3.7344 37 1 4.2389 -1.4000 2.1232 38 1 5.1818 0.6661 2.9357 39 1 6.1212 -0.5491 3.8608 40 1 4.7998 1.3742 5.2089 41 1 4.7218 -0.3127 5.8073 42 1 2.6223 1.3092 4.3727 43 1 2.4172 0.0089 5.5796 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194648057.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:08 Heat of formation + Delta-G solvation = -73.976981 kcal Electronic energy + Delta-G solvation = -25787.525022 eV Core-core repulsion = 22132.163255 eV Total energy + Delta-G solvation = -3655.361767 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.94223 -40.71192 -38.33302 -36.87952 -34.80763 -32.59803 -31.81844 -30.59788 -29.23983 -28.40005 -27.61665 -25.28805 -23.38540 -22.51344 -21.81810 -20.74842 -20.01350 -18.97887 -17.94202 -16.76780 -16.21118 -16.15152 -15.68775 -15.60514 -15.42657 -15.25216 -14.76462 -14.17838 -13.80634 -13.59445 -13.28038 -13.26307 -12.95156 -12.61824 -12.43077 -11.95893 -11.73778 -11.72209 -11.37927 -11.15158 -11.06960 -11.01243 -10.98520 -10.94977 -10.76356 -10.69944 -10.46082 -10.30041 -10.25146 -9.10374 -9.02073 -8.92719 -8.67096 -8.57054 -7.93194 -6.14450 -4.23953 1.11974 1.16340 3.23619 3.25266 3.29582 3.30938 3.53246 3.95105 4.19657 4.34310 4.53418 4.66656 4.71259 4.81991 4.95688 5.13584 5.17913 5.24630 5.30775 5.43801 5.50736 5.58377 5.68958 5.72764 5.76253 5.92051 5.98443 6.01406 6.04881 6.12931 6.26529 6.29339 6.36891 6.49403 6.51156 6.78854 6.85631 6.93051 7.11744 7.42072 7.52289 7.66514 7.88448 8.12390 8.62516 8.74649 9.06880 9.43758 10.91279 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.014977 B = 0.004541 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.053724 B = 6164.632675 C = 6949.657274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.266 3.734 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.707 5.707 13 C 0.517 3.483 14 O -0.546 6.546 15 C -0.047 4.047 16 C -0.033 4.033 17 C -0.125 4.125 18 C -0.084 4.084 19 C -0.159 4.159 20 C 0.094 3.906 21 F -0.144 7.144 22 C -0.146 4.146 23 C -0.114 4.114 24 C -0.124 4.124 25 C -0.122 4.122 26 C -0.111 4.111 27 H 0.015 0.985 28 H 0.090 0.910 29 H 0.026 0.974 30 H 0.265 0.735 31 H 0.389 0.611 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.064 -7.405 14.735 16.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.354 5.354 13 C 0.301 3.699 14 O -0.425 6.425 15 C -0.050 4.050 16 C -0.034 4.034 17 C -0.143 4.143 18 C -0.102 4.102 19 C -0.178 4.178 20 C 0.075 3.925 21 F -0.122 7.122 22 C -0.165 4.165 23 C -0.151 4.151 24 C -0.162 4.162 25 C -0.159 4.159 26 C -0.148 4.148 27 H 0.034 0.966 28 H 0.109 0.891 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.222 0.778 32 H 0.158 0.842 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.113 0.887 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.722 -6.465 14.628 16.223 hybrid contribution 0.389 -1.167 -0.757 1.445 sum 3.111 -7.632 13.870 16.134 Atomic orbital electron populations 1.22092 0.98502 0.99070 1.00999 1.18739 0.91047 0.93804 0.79964 0.93515 1.21166 1.32536 1.13217 0.90305 0.92174 1.24869 0.94777 0.94923 0.99005 1.69888 1.35762 1.22405 1.23995 0.86525 0.79181 0.79615 0.81877 1.20174 1.21138 1.20186 1.46604 1.64939 1.13497 1.10393 1.19949 0.78996 0.86737 0.84203 1.90630 1.50235 1.17873 1.83722 1.20497 0.95200 0.93801 0.95503 1.19430 0.94513 0.94704 0.94755 1.21586 0.93705 0.98549 1.00495 1.21029 0.99835 0.93930 0.95390 1.21127 0.95702 1.02101 0.98856 1.17616 0.94651 0.91492 0.88760 1.91483 1.90789 1.71491 1.58460 1.20864 1.00718 0.95665 0.99214 1.22611 0.91464 0.98568 1.02490 1.22514 0.97971 0.98337 0.97369 1.22358 0.94998 1.01142 0.97412 1.22266 0.96348 1.00236 0.95969 0.96556 0.89142 0.95469 0.92517 0.77801 0.84191 0.84843 0.84983 0.84673 0.90582 0.90210 0.90986 0.91325 0.91430 0.91892 0.88704 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.26 37.16 0.34 -3.21 16 2 C 0.27 6.53 2.52 -69.08 -0.17 6.36 16 3 H 0.05 1.33 7.66 -51.93 -0.40 0.94 16 4 C -0.53 -13.75 8.73 -34.44 -0.30 -14.06 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.41 11.32 55.43 0.63 -23.78 16 8 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.71 -14.09 3.49 -54.93 -0.19 -14.29 16 13 C 0.52 9.89 4.94 -10.99 -0.05 9.84 16 14 O -0.55 -12.53 14.91 5.56 0.08 -12.45 16 15 C -0.05 -0.68 0.62 -155.69 -0.10 -0.78 16 16 C -0.03 -0.46 4.63 -104.63 -0.48 -0.94 16 17 C -0.13 -1.79 8.81 -39.57 -0.35 -2.14 16 18 C -0.08 -1.01 10.04 -39.60 -0.40 -1.41 16 19 C -0.16 -1.80 10.03 -39.52 -0.40 -2.20 16 20 C 0.09 1.14 7.30 -39.42 -0.29 0.86 16 21 F -0.14 -1.77 17.27 2.25 0.04 -1.73 16 22 C -0.15 -1.77 8.28 -39.51 -0.33 -2.10 16 23 C -0.11 -1.45 5.69 -25.03 -0.14 -1.60 16 24 C -0.12 -1.48 6.91 -24.70 -0.17 -1.65 16 25 C -0.12 -1.36 6.83 -25.07 -0.17 -1.53 16 26 C -0.11 -1.51 5.86 -25.61 -0.15 -1.66 16 27 H 0.02 0.37 8.09 -51.93 -0.42 -0.05 16 28 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.39 7.00 7.93 -40.82 -0.32 6.68 16 32 H 0.14 2.32 5.94 -52.49 -0.31 2.01 16 33 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 34 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.14 1.43 7.48 -52.49 -0.39 1.04 16 36 H 0.08 0.83 6.60 -51.93 -0.34 0.49 16 37 H 0.08 1.11 7.10 -51.93 -0.37 0.74 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 1.54 6.42 -51.93 -0.33 1.20 16 43 H 0.07 0.84 7.42 -51.93 -0.39 0.46 16 LS Contribution 347.18 15.07 5.23 5.23 Total: -1.00 -28.78 347.18 -8.58 -37.36 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -6.09 Total: 8.90 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -3.25 Total: -14.54 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.44 Total: -38.07 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.08 Total: -12.45 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.78 -8.58 -37.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194648057.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.618 kcal (2) G-P(sol) polarization free energy of solvation -28.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds