Wall clock time and date at job start Tue Mar 31 2020 09:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47662 * 2 1 4 4 C 1.50705 * 109.46859 * 239.99604 * 2 1 3 5 5 H 1.08001 * 119.99861 * 240.00347 * 4 2 1 6 6 C 1.37874 * 119.99926 * 60.00543 * 4 2 1 7 7 N 1.31517 * 120.00115 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99961 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47087 * 60.00327 * 8 6 4 10 10 H 1.48502 * 109.47320 * 179.97438 * 8 6 4 11 11 H 1.48491 * 109.47161 * 300.00132 * 8 6 4 12 12 N 1.46502 * 109.46708 * 120.00275 * 2 1 3 13 13 C 1.34783 * 119.99648 * 274.99144 * 12 2 1 14 14 O 1.21276 * 119.99887 * 5.15473 * 13 12 2 15 15 C 1.50693 * 119.99748 * 185.15191 * 13 12 2 16 16 C 1.50700 * 110.01988 * 293.96005 * 15 13 12 17 17 C 1.38271 * 119.98675 * 354.87556 * 16 15 13 18 18 C 1.38222 * 120.05000 * 179.97438 * 17 16 15 19 19 C 1.38209 * 120.03005 * 359.78112 * 18 17 16 20 20 C 1.38441 * 119.97313 * 0.44965 * 19 18 17 21 21 F 1.35103 * 120.02997 * 179.81332 * 20 19 18 22 22 C 1.38177 * 119.99020 * 174.84720 * 16 15 13 23 23 C 1.54268 * 110.03534 * 55.35783 * 15 13 12 24 24 C 1.54961 * 104.16089 * 95.74963 * 23 15 13 25 25 C 1.54893 * 102.77713 * 37.89211 * 24 23 15 26 26 C 1.53880 * 110.03212 * 172.57076 * 15 13 12 27 27 H 1.09007 * 109.47054 * 300.00433 * 1 2 3 28 28 H 1.09004 * 109.46980 * 59.99854 * 1 2 3 29 29 H 1.08996 * 109.47662 * 180.02562 * 1 2 3 30 30 H 0.97000 * 120.00390 * 179.97438 * 7 6 4 31 31 H 0.96993 * 120.00392 * 95.00238 * 12 2 1 32 32 H 1.08000 * 119.97152 * 359.97438 * 17 16 15 33 33 H 1.08006 * 119.98410 * 180.02562 * 18 17 16 34 34 H 1.07999 * 120.01823 * 180.23017 * 19 18 17 35 35 H 1.08001 * 120.00927 * 0.02562 * 22 16 15 36 36 H 1.09003 * 110.48619 * 214.40496 * 23 15 13 37 37 H 1.09002 * 110.48081 * 337.04001 * 23 15 13 38 38 H 1.08993 * 110.72324 * 279.57407 * 24 23 15 39 39 H 1.09003 * 110.91967 * 156.29540 * 24 23 15 40 40 H 1.08992 * 110.48401 * 203.40069 * 25 24 23 41 41 H 1.08999 * 110.48674 * 80.75863 * 25 24 23 42 42 H 1.09002 * 110.03208 * 359.95505 * 26 15 13 43 43 H 1.09003 * 110.02838 * 121.32884 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5887 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.8278 -2.5200 -4.0081 10 1 1.8269 -0.4202 -5.2205 11 1 3.8073 -1.1193 -4.0077 12 7 2.0182 -0.6907 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.7715 1.1322 2.4365 15 6 2.7576 -0.6960 3.5566 16 6 1.8655 -1.8163 4.0258 17 6 0.6334 -2.0142 3.4304 18 6 -0.1856 -3.0417 3.8593 19 6 0.2281 -3.8754 4.8810 20 6 1.4595 -3.6754 5.4812 21 9 1.8635 -4.4873 6.4826 22 6 2.2794 -2.6458 5.0505 23 6 4.1536 -1.2465 3.1990 24 6 5.1298 -0.1385 3.6690 25 6 4.4775 0.3578 4.9833 26 6 2.9634 0.3239 4.6904 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.7088 1.1613 -3.4844 31 1 2.2489 -1.6318 1.1527 32 1 0.3107 -1.3654 2.6295 33 1 -1.1477 -3.1956 3.3932 34 1 -0.4104 -4.6805 5.2135 35 1 3.2419 -2.4911 5.5154 36 1 4.3457 -2.1763 3.7344 37 1 4.2389 -1.4000 2.1232 38 1 5.1818 0.6661 2.9357 39 1 6.1212 -0.5491 3.8608 40 1 4.7998 1.3742 5.2089 41 1 4.7218 -0.3127 5.8073 42 1 2.6223 1.3092 4.3727 43 1 2.4172 0.0089 5.5796 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194648057.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:07 Heat of formation + Delta-G solvation = -88.616291 kcal Electronic energy + Delta-G solvation = -25788.159830 eV Core-core repulsion = 22132.163255 eV Total energy + Delta-G solvation = -3655.996575 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.87547 -41.97910 -39.60634 -38.08801 -36.65901 -34.40802 -32.95293 -31.66499 -30.84599 -29.52221 -28.79902 -27.34400 -24.57723 -23.63471 -23.11051 -22.04564 -21.38158 -20.43034 -19.20963 -18.19139 -17.51298 -17.28552 -17.04680 -16.96536 -16.58682 -16.47090 -16.17083 -15.57728 -15.09366 -14.81452 -14.66007 -14.39355 -14.29453 -14.12505 -13.75340 -13.53476 -13.09626 -12.93999 -12.90305 -12.76505 -12.66928 -12.39753 -12.27906 -12.17342 -12.07968 -12.00517 -11.97047 -11.72284 -11.42239 -11.12279 -10.66561 -10.54041 -9.90924 -9.76263 -9.64058 -8.17339 -6.34889 0.13298 0.21155 1.44825 1.46382 1.54211 1.73611 2.33151 2.55113 2.56287 3.12768 3.18519 3.52042 3.54643 3.64699 3.88224 4.01797 4.11600 4.16284 4.25868 4.42466 4.47489 4.52489 4.64724 4.74203 4.78246 4.80743 4.91040 4.92679 5.03038 5.06503 5.09224 5.10949 5.16913 5.24439 5.28115 5.35492 5.42922 5.47798 5.50743 5.61091 5.68191 5.89742 5.90345 6.10019 6.72011 6.93226 7.31625 7.51192 8.88491 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.014977 B = 0.004541 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.053724 B = 6164.632675 C = 6949.657274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.274 3.726 3 H -0.004 1.004 4 C -0.545 4.545 5 H 0.071 0.929 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.970 3.030 9 H -0.265 1.265 10 H -0.287 1.287 11 H -0.271 1.271 12 N -0.700 5.700 13 C 0.516 3.484 14 O -0.592 6.592 15 C -0.037 4.037 16 C -0.041 4.041 17 C -0.147 4.147 18 C -0.083 4.083 19 C -0.151 4.151 20 C 0.092 3.908 21 F -0.142 7.142 22 C -0.138 4.138 23 C -0.112 4.112 24 C -0.125 4.125 25 C -0.113 4.113 26 C -0.112 4.112 27 H 0.011 0.989 28 H 0.066 0.934 29 H 0.040 0.960 30 H 0.265 0.735 31 H 0.401 0.599 32 H 0.110 0.890 33 H 0.150 0.850 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.105 0.895 37 H 0.064 0.936 38 H 0.044 0.956 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.061 0.939 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.334 -10.330 16.239 19.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.171 3.829 3 H 0.014 0.986 4 C -0.584 4.584 5 H 0.089 0.911 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.794 3.206 9 H -0.189 1.189 10 H -0.212 1.212 11 H -0.196 1.196 12 N -0.348 5.348 13 C 0.303 3.697 14 O -0.473 6.473 15 C -0.040 4.040 16 C -0.042 4.042 17 C -0.166 4.166 18 C -0.101 4.101 19 C -0.170 4.170 20 C 0.073 3.927 21 F -0.120 7.120 22 C -0.156 4.156 23 C -0.149 4.149 24 C -0.162 4.162 25 C -0.151 4.151 26 C -0.150 4.150 27 H 0.030 0.970 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.236 0.764 32 H 0.128 0.872 33 H 0.168 0.832 34 H 0.176 0.824 35 H 0.175 0.825 36 H 0.124 0.876 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.116 0.884 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.079 0.921 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.006 -9.424 16.156 19.127 hybrid contribution -0.059 -0.227 -1.174 1.197 sum 3.946 -9.650 14.982 18.252 Atomic orbital electron populations 1.21883 0.98300 0.99387 0.99502 1.18319 0.91140 0.91633 0.81834 0.98608 1.21476 1.32616 1.13491 0.90775 0.91085 1.25755 0.94834 0.95529 1.02189 1.70044 1.36913 1.23889 1.24629 0.85432 0.78667 0.78723 0.77733 1.18949 1.21209 1.19594 1.46315 1.65019 1.13847 1.09618 1.20783 0.77775 0.86178 0.84998 1.90605 1.52018 1.20106 1.84588 1.20430 0.96168 0.94209 0.93223 1.19286 0.94179 0.94908 0.95790 1.21466 0.94890 0.99459 1.00747 1.21178 1.00152 0.93188 0.95548 1.21384 0.95687 1.02085 0.97799 1.17712 0.94882 0.91416 0.88719 1.91494 1.90792 1.71390 1.58362 1.20934 1.01530 0.94907 0.98266 1.22668 0.90207 1.00043 1.02001 1.22534 0.99347 0.97316 0.97020 1.22363 0.92524 1.02283 0.97899 1.22276 0.98682 0.98124 0.95905 0.96973 0.91574 0.94055 0.92570 0.76411 0.87231 0.83243 0.82424 0.82525 0.87637 0.91764 0.93720 0.88433 0.91035 0.88805 0.92079 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.65 9.26 71.98 0.67 -5.98 16 2 C 0.27 14.13 2.52 44.25 0.11 14.24 16 3 H 0.00 -0.24 7.66 -2.39 -0.02 -0.26 16 4 C -0.55 -28.62 8.73 25.60 0.22 -28.40 16 5 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 6 C 0.02 0.91 5.30 84.65 0.45 1.36 16 7 N -0.92 -52.29 11.32 21.45 0.24 -52.04 16 8 Si 0.97 41.68 29.54 68.60 2.03 43.71 16 9 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 10 H -0.29 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 12 N -0.70 -29.04 3.49 -446.10 -1.56 -30.60 16 13 C 0.52 20.66 4.94 87.65 0.43 21.09 16 14 O -0.59 -29.10 14.91 -3.02 -0.04 -29.14 16 15 C -0.04 -1.07 0.62 -52.95 -0.03 -1.10 16 16 C -0.04 -1.07 4.63 -19.87 -0.09 -1.16 16 17 C -0.15 -4.16 8.81 22.27 0.20 -3.96 16 18 C -0.08 -1.85 10.04 22.26 0.22 -1.63 16 19 C -0.15 -2.95 10.03 22.31 0.22 -2.73 16 20 C 0.09 1.92 7.30 22.38 0.16 2.09 16 21 F -0.14 -2.97 17.27 44.97 0.78 -2.19 16 22 C -0.14 -2.90 8.28 22.31 0.18 -2.72 16 23 C -0.11 -2.66 5.69 31.69 0.18 -2.48 16 24 C -0.12 -2.74 6.91 31.91 0.22 -2.52 16 25 C -0.11 -2.28 6.83 31.67 0.22 -2.06 16 26 C -0.11 -3.01 5.86 31.32 0.18 -2.82 16 27 H 0.01 0.57 8.09 -2.38 -0.02 0.55 16 28 H 0.07 3.66 6.07 -2.39 -0.01 3.65 16 29 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.40 14.67 7.93 -92.71 -0.74 13.93 16 32 H 0.11 3.77 5.94 -2.91 -0.02 3.76 16 33 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 34 H 0.16 2.26 8.06 -2.91 -0.02 2.23 16 35 H 0.16 2.59 7.48 -2.91 -0.02 2.57 16 36 H 0.11 1.92 6.60 -2.39 -0.02 1.90 16 37 H 0.06 1.74 7.10 -2.39 -0.02 1.72 16 38 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.06 2.07 6.42 -2.39 -0.02 2.06 16 43 H 0.08 1.91 7.42 -2.39 -0.02 1.89 16 Total: -1.00 -65.46 347.18 5.29 -60.17 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.29 Total: 28.88 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 3.55 Total: -18.78 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -1.31 Total: -82.65 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.04 Total: -29.14 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.78 Total: -2.19 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -65.46 5.29 -60.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194648057.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.444 kcal (2) G-P(sol) polarization free energy of solvation -65.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds