Wall clock time and date at job start Tue Mar 31 2020 09:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47293 * 2 1 4 4 C 1.53001 * 109.47002 * 120.00019 * 2 1 3 5 5 C 1.53003 * 109.46924 * 295.00195 * 4 2 1 6 6 C 1.50701 * 109.46889 * 179.97438 * 5 4 2 7 7 C 1.38219 * 120.01502 * 264.97631 * 6 5 4 8 8 C 1.38218 * 120.02734 * 180.02562 * 7 6 5 9 9 C 1.38269 * 120.05233 * 0.02562 * 8 7 6 10 10 C 1.38177 * 120.02321 * 359.97438 * 9 8 7 11 11 C 1.38439 * 120.01269 * 84.99609 * 6 5 4 12 12 F 1.35108 * 120.02603 * 359.95839 * 11 6 5 13 13 C 1.50704 * 109.47077 * 240.00020 * 2 1 3 14 14 O 1.21296 * 119.99665 * 249.38377 * 13 2 1 15 15 N 1.34775 * 120.00108 * 69.38151 * 13 2 1 16 16 C 1.37090 * 120.00020 * 184.68919 * 15 13 2 17 17 H 1.08000 * 120.00215 * 331.66383 * 16 15 13 18 18 C 1.38950 * 119.99842 * 151.65991 * 16 15 13 19 19 N 1.31407 * 120.00280 * 343.42782 * 18 16 15 20 20 Si 1.86802 * 119.99975 * 163.43068 * 18 16 15 21 21 H 1.48498 * 109.47611 * 89.99677 * 20 18 16 22 22 H 1.48499 * 109.47047 * 210.00021 * 20 18 16 23 23 H 1.48500 * 109.47050 * 329.99639 * 20 18 16 24 24 C 1.46502 * 120.00072 * 4.69499 * 15 13 2 25 25 C 1.52995 * 117.50146 * 135.44687 * 24 15 13 26 26 C 1.53000 * 117.50051 * 66.78552 * 24 15 13 27 27 H 1.08992 * 109.47368 * 308.79895 * 1 2 3 28 28 H 1.09010 * 109.47071 * 68.79675 * 1 2 3 29 29 H 1.09002 * 109.47194 * 188.79426 * 1 2 3 30 30 H 1.08996 * 109.46863 * 174.99915 * 4 2 1 31 31 H 1.09000 * 109.46778 * 54.99927 * 4 2 1 32 32 H 1.09003 * 109.47245 * 60.00033 * 5 4 2 33 33 H 1.08997 * 109.47044 * 299.99990 * 5 4 2 34 34 H 1.07995 * 119.98680 * 0.04298 * 7 6 5 35 35 H 1.08000 * 119.97863 * 180.27710 * 8 7 6 36 36 H 1.08000 * 119.98920 * 179.97438 * 9 8 7 37 37 H 1.08005 * 120.01268 * 180.02562 * 10 9 8 38 38 H 0.96997 * 120.00315 * 185.06718 * 19 18 16 39 39 H 1.09001 * 115.54854 * 281.12005 * 24 15 13 40 40 H 1.09001 * 117.49636 * 359.97438 * 25 24 15 41 41 H 1.08996 * 117.49815 * 145.01770 * 25 24 15 42 42 H 1.09003 * 117.49934 * 214.98416 * 26 24 15 43 43 H 1.09000 * 117.49770 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6351 0.0689 2.4953 6 6 2.1369 -0.6418 3.7258 7 6 1.3064 -1.5091 4.4103 8 6 1.7662 -2.1607 5.5392 9 6 3.0570 -1.9455 5.9855 10 6 3.8891 -1.0789 5.3029 11 6 3.4298 -0.4260 4.1713 12 9 4.2426 0.4212 3.5029 13 6 2.0324 -0.7104 -1.2305 14 8 2.5832 -1.7861 -1.1273 15 7 1.8695 -0.1505 -2.4456 16 6 2.2390 -0.8384 -3.5724 17 1 3.0345 -1.5673 -3.5236 18 6 1.5900 -0.5979 -4.7772 19 7 0.4331 0.0252 -4.7875 20 14 2.3620 -1.1606 -6.3825 21 1 1.9040 -2.5380 -6.6961 22 1 1.9547 -0.2424 -7.4762 23 1 3.8412 -1.1487 -6.2513 24 6 1.2977 1.1932 -2.5623 25 6 1.9776 2.1693 -3.5244 26 6 2.1193 2.3609 -2.0124 27 1 -0.3634 0.6439 0.8008 28 1 -0.3634 0.3717 -0.9582 29 1 -0.3634 -1.0156 0.1571 30 1 3.1263 -0.7995 1.2056 31 1 1.6053 -1.7198 1.2951 32 1 0.5488 0.1471 2.5389 33 1 2.0697 1.0675 2.4494 34 1 0.2979 -1.6779 4.0627 35 1 1.1181 -2.8417 6.0708 36 1 3.4151 -2.4549 6.8680 37 1 4.8975 -0.9112 5.6514 38 1 -0.0549 0.1283 -5.6194 39 1 0.2133 1.2525 -2.4681 40 1 2.8507 1.8117 -4.0703 41 1 1.3407 2.8709 -4.0630 42 1 1.5756 3.1885 -1.5568 43 1 3.0852 2.1292 -1.5634 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266230722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:30 Heat of formation + Delta-G solvation = -37.236071 kcal Electronic energy + Delta-G solvation = -25093.340311 eV Core-core repulsion = 21439.571749 eV Total energy + Delta-G solvation = -3653.768562 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.84277 -39.33618 -38.87087 -36.31314 -35.06134 -32.95006 -32.08249 -30.96272 -30.58636 -28.08541 -25.36070 -24.61904 -22.86481 -22.37115 -21.50282 -21.26674 -20.40611 -18.38048 -17.58815 -16.84205 -16.49184 -16.06981 -15.68341 -15.44296 -15.07571 -14.57265 -14.49737 -14.19740 -13.97627 -13.45119 -13.36371 -13.17230 -12.98800 -12.58872 -12.38377 -11.99785 -11.95612 -11.71625 -11.55090 -11.16062 -11.09306 -11.04831 -10.78849 -10.70244 -10.43792 -10.39893 -10.30958 -10.20401 -9.68089 -9.36722 -9.03081 -8.80489 -8.66903 -8.18632 -7.55685 -6.26983 -3.82128 1.08766 1.12084 3.19253 3.27541 3.33045 3.49814 3.96439 4.16791 4.23876 4.58672 4.66829 4.71088 4.79177 4.88861 5.09301 5.12911 5.22935 5.36358 5.45113 5.49937 5.71744 5.77352 5.80779 5.84137 5.92930 5.94928 5.99925 6.04308 6.07882 6.20623 6.27236 6.28159 6.29963 6.40563 6.43048 6.50489 6.71528 6.77419 6.82559 6.85448 6.95112 7.17802 7.64984 8.24558 8.57088 9.26132 9.49890 10.08070 10.80606 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.024761 B = 0.003310 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.550393 B = 8457.315596 C = 8633.254529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.087 4.087 5 C -0.084 4.084 6 C -0.105 4.105 7 C -0.090 4.090 8 C -0.130 4.130 9 C -0.102 4.102 10 C -0.155 4.155 11 C 0.099 3.901 12 F -0.136 7.136 13 C 0.465 3.535 14 O -0.586 6.586 15 N -0.422 5.422 16 C -0.316 4.316 17 H 0.094 0.906 18 C 0.044 3.956 19 N -0.869 5.869 20 Si 0.914 3.086 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.270 1.270 24 C 0.130 3.870 25 C -0.146 4.146 26 C -0.223 4.223 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.266 0.734 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.407 3.079 17.032 17.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 H 0.102 0.898 4 C -0.125 4.125 5 C -0.121 4.121 6 C -0.105 4.105 7 C -0.108 4.108 8 C -0.148 4.148 9 C -0.120 4.120 10 C -0.174 4.174 11 C 0.080 3.920 12 F -0.115 7.115 13 C 0.254 3.746 14 O -0.470 6.470 15 N -0.140 5.140 16 C -0.444 4.444 17 H 0.111 0.889 18 C -0.160 4.160 19 N -0.507 5.507 20 Si 0.741 3.259 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.195 1.195 24 C 0.024 3.976 25 C -0.183 4.183 26 C -0.261 4.261 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.076 0.924 39 H 0.123 0.877 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.209 2.701 16.860 17.076 hybrid contribution 0.405 -0.032 -1.110 1.182 sum 0.196 2.669 15.750 15.976 Atomic orbital electron populations 1.21792 0.94034 1.01705 1.02276 1.21184 0.96917 1.00386 0.93983 0.89756 1.21300 1.01532 0.98747 0.90938 1.20708 1.01509 0.98773 0.91111 1.20097 0.92701 0.99461 0.98282 1.21000 0.99866 0.95267 0.94678 1.21190 0.96161 1.00351 0.97144 1.20956 0.93748 0.97620 0.99699 1.21134 1.01273 0.99238 0.95720 1.17621 0.88765 0.92767 0.92848 1.91505 1.72013 1.68334 1.79616 1.20052 0.83992 0.86211 0.84376 1.90508 1.46944 1.23317 1.86199 1.43016 1.54746 1.11467 1.04818 1.19455 1.17995 1.21670 0.85268 0.88876 1.25220 0.94857 0.96632 0.99337 1.69870 1.11592 1.41511 1.27681 0.86127 0.79792 0.78449 0.81566 1.20417 1.20865 1.19508 1.21099 0.94707 0.79785 1.01986 1.22742 1.02912 1.01786 0.90873 1.23527 1.02449 1.01780 0.98341 0.92809 0.91413 0.92765 0.91715 0.91316 0.90212 0.90770 0.84991 0.85521 0.85354 0.84999 0.92381 0.87697 0.89063 0.89774 0.89497 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.60 37.16 0.32 -2.00 16 2 C -0.10 -1.92 2.00 -91.77 -0.18 -2.10 16 3 H 0.08 1.47 6.15 -51.93 -0.32 1.15 16 4 C -0.09 -1.49 3.96 -26.73 -0.11 -1.59 16 5 C -0.08 -1.11 4.88 -27.88 -0.14 -1.25 16 6 C -0.10 -1.34 5.14 -104.55 -0.54 -1.88 16 7 C -0.09 -0.98 9.68 -39.60 -0.38 -1.36 16 8 C -0.13 -1.22 10.04 -39.58 -0.40 -1.62 16 9 C -0.10 -0.95 10.04 -39.59 -0.40 -1.34 16 10 C -0.15 -1.69 10.03 -39.52 -0.40 -2.08 16 11 C 0.10 1.32 7.24 -39.42 -0.29 1.03 16 12 F -0.14 -2.01 16.57 2.25 0.04 -1.97 16 13 C 0.47 11.45 6.82 -10.98 -0.07 11.37 16 14 O -0.59 -16.56 15.77 5.54 0.09 -16.47 16 15 N -0.42 -10.71 2.90 -107.73 -0.31 -11.03 16 16 C -0.32 -8.84 8.70 -14.94 -0.13 -8.97 16 17 H 0.09 2.77 7.51 -52.49 -0.39 2.37 16 18 C 0.04 1.17 4.45 -17.47 -0.08 1.09 16 19 N -0.87 -22.83 11.28 55.50 0.63 -22.20 16 20 Si 0.91 20.81 29.59 -169.99 -5.03 15.78 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 C 0.13 2.83 2.73 -67.93 -0.19 2.64 16 25 C -0.15 -2.98 8.70 -26.70 -0.23 -3.21 16 26 C -0.22 -4.03 8.67 -26.69 -0.23 -4.26 16 27 H 0.05 0.70 7.02 -51.93 -0.36 0.34 16 28 H 0.07 1.22 5.65 -51.92 -0.29 0.93 16 29 H 0.05 0.91 8.11 -51.93 -0.42 0.49 16 30 H 0.06 1.23 8.09 -51.93 -0.42 0.81 16 31 H 0.07 1.24 8.11 -51.93 -0.42 0.82 16 32 H 0.08 0.92 6.68 -51.93 -0.35 0.57 16 33 H 0.07 0.97 7.79 -51.93 -0.40 0.57 16 34 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 36 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 37 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 38 H 0.27 6.68 8.32 -40.82 -0.34 6.34 16 39 H 0.11 2.32 6.61 -51.93 -0.34 1.98 16 40 H 0.09 2.03 7.77 -51.93 -0.40 1.63 16 41 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 42 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.08 1.57 8.04 -51.93 -0.42 1.16 16 LS Contribution 353.47 15.07 5.33 5.33 Total: -1.00 -31.16 353.47 -8.92 -40.08 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.22 Total: 6.01 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -3.43 Total: -15.54 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.31 Total: -33.23 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: 0.09 Total: -16.47 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.16 -8.92 -40.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266230722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.848 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds