Wall clock time and date at job start Tue Mar 31 2020 09:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47293 * 2 1 4 4 C 1.53001 * 109.47002 * 120.00019 * 2 1 3 5 5 C 1.53003 * 109.46924 * 295.00195 * 4 2 1 6 6 C 1.50701 * 109.46889 * 179.97438 * 5 4 2 7 7 C 1.38219 * 120.01502 * 264.97631 * 6 5 4 8 8 C 1.38218 * 120.02734 * 180.02562 * 7 6 5 9 9 C 1.38269 * 120.05233 * 0.02562 * 8 7 6 10 10 C 1.38177 * 120.02321 * 359.97438 * 9 8 7 11 11 C 1.38439 * 120.01269 * 84.99609 * 6 5 4 12 12 F 1.35108 * 120.02603 * 359.95839 * 11 6 5 13 13 C 1.50704 * 109.47077 * 240.00020 * 2 1 3 14 14 O 1.21296 * 119.99665 * 249.38377 * 13 2 1 15 15 N 1.34775 * 120.00108 * 69.38151 * 13 2 1 16 16 C 1.37090 * 120.00020 * 184.68919 * 15 13 2 17 17 H 1.08000 * 120.00215 * 331.66383 * 16 15 13 18 18 C 1.38950 * 119.99842 * 151.65991 * 16 15 13 19 19 N 1.31407 * 120.00280 * 343.42782 * 18 16 15 20 20 Si 1.86802 * 119.99975 * 163.43068 * 18 16 15 21 21 H 1.48498 * 109.47611 * 89.99677 * 20 18 16 22 22 H 1.48499 * 109.47047 * 210.00021 * 20 18 16 23 23 H 1.48500 * 109.47050 * 329.99639 * 20 18 16 24 24 C 1.46502 * 120.00072 * 4.69499 * 15 13 2 25 25 C 1.52995 * 117.50146 * 135.44687 * 24 15 13 26 26 C 1.53000 * 117.50051 * 66.78552 * 24 15 13 27 27 H 1.08992 * 109.47368 * 308.79895 * 1 2 3 28 28 H 1.09010 * 109.47071 * 68.79675 * 1 2 3 29 29 H 1.09002 * 109.47194 * 188.79426 * 1 2 3 30 30 H 1.08996 * 109.46863 * 174.99915 * 4 2 1 31 31 H 1.09000 * 109.46778 * 54.99927 * 4 2 1 32 32 H 1.09003 * 109.47245 * 60.00033 * 5 4 2 33 33 H 1.08997 * 109.47044 * 299.99990 * 5 4 2 34 34 H 1.07995 * 119.98680 * 0.04298 * 7 6 5 35 35 H 1.08000 * 119.97863 * 180.27710 * 8 7 6 36 36 H 1.08000 * 119.98920 * 179.97438 * 9 8 7 37 37 H 1.08005 * 120.01268 * 180.02562 * 10 9 8 38 38 H 0.96997 * 120.00315 * 185.06718 * 19 18 16 39 39 H 1.09001 * 115.54854 * 281.12005 * 24 15 13 40 40 H 1.09001 * 117.49636 * 359.97438 * 25 24 15 41 41 H 1.08996 * 117.49815 * 145.01770 * 25 24 15 42 42 H 1.09003 * 117.49934 * 214.98416 * 26 24 15 43 43 H 1.09000 * 117.49770 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6351 0.0689 2.4953 6 6 2.1369 -0.6418 3.7258 7 6 1.3064 -1.5091 4.4103 8 6 1.7662 -2.1607 5.5392 9 6 3.0570 -1.9455 5.9855 10 6 3.8891 -1.0789 5.3029 11 6 3.4298 -0.4260 4.1713 12 9 4.2426 0.4212 3.5029 13 6 2.0324 -0.7104 -1.2305 14 8 2.5832 -1.7861 -1.1273 15 7 1.8695 -0.1505 -2.4456 16 6 2.2390 -0.8384 -3.5724 17 1 3.0345 -1.5673 -3.5236 18 6 1.5900 -0.5979 -4.7772 19 7 0.4331 0.0252 -4.7875 20 14 2.3620 -1.1606 -6.3825 21 1 1.9040 -2.5380 -6.6961 22 1 1.9547 -0.2424 -7.4762 23 1 3.8412 -1.1487 -6.2513 24 6 1.2977 1.1932 -2.5623 25 6 1.9776 2.1693 -3.5244 26 6 2.1193 2.3609 -2.0124 27 1 -0.3634 0.6439 0.8008 28 1 -0.3634 0.3717 -0.9582 29 1 -0.3634 -1.0156 0.1571 30 1 3.1263 -0.7995 1.2056 31 1 1.6053 -1.7198 1.2951 32 1 0.5488 0.1471 2.5389 33 1 2.0697 1.0675 2.4494 34 1 0.2979 -1.6779 4.0627 35 1 1.1181 -2.8417 6.0708 36 1 3.4151 -2.4549 6.8680 37 1 4.8975 -0.9112 5.6514 38 1 -0.0549 0.1283 -5.6194 39 1 0.2133 1.2525 -2.4681 40 1 2.8507 1.8117 -4.0703 41 1 1.3407 2.8709 -4.0630 42 1 1.5756 3.1885 -1.5568 43 1 3.0852 2.1292 -1.5634 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266230722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:29 Heat of formation + Delta-G solvation = -53.219935 kcal Electronic energy + Delta-G solvation = -25094.033423 eV Core-core repulsion = 21439.571749 eV Total energy + Delta-G solvation = -3654.461674 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.85708 -40.90539 -39.94858 -38.03698 -36.50687 -34.84212 -33.39499 -32.75328 -31.40647 -29.23945 -27.22821 -25.98188 -23.92014 -23.62752 -23.00168 -22.77741 -21.69815 -20.11042 -18.78006 -18.49066 -17.66031 -17.38694 -16.96203 -16.76265 -16.52653 -16.17075 -16.00646 -15.71873 -15.10414 -14.86454 -14.75712 -14.47866 -14.10224 -13.84138 -13.68636 -13.48539 -13.41393 -13.04332 -12.90587 -12.73091 -12.51382 -12.47885 -12.27104 -12.17624 -12.12231 -12.05491 -11.76894 -11.53892 -11.40804 -11.07626 -10.66090 -10.12956 -9.84411 -9.55047 -9.53184 -8.30365 -5.93633 0.24497 0.31501 1.34241 1.38554 1.49457 2.06969 2.28263 2.68096 2.95656 3.06256 3.21837 3.38526 3.68055 3.82103 3.87680 4.06425 4.10471 4.19452 4.26242 4.32894 4.38288 4.45300 4.45871 4.55044 4.60554 4.71331 4.80973 4.83299 4.99018 5.01107 5.03372 5.08324 5.11719 5.17549 5.29469 5.36428 5.40129 5.41084 5.47598 5.50032 5.53213 5.57013 6.02403 6.17114 6.57960 7.22940 7.53593 8.12062 8.74864 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.024761 B = 0.003310 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.550393 B = 8457.315596 C = 8633.254529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 H 0.100 0.900 4 C -0.076 4.076 5 C -0.072 4.072 6 C -0.126 4.126 7 C -0.097 4.097 8 C -0.127 4.127 9 C -0.097 4.097 10 C -0.163 4.163 11 C 0.066 3.934 12 F -0.154 7.154 13 C 0.446 3.554 14 O -0.638 6.638 15 N -0.431 5.431 16 C -0.356 4.356 17 H 0.058 0.942 18 C 0.021 3.979 19 N -0.875 5.875 20 Si 0.970 3.030 21 H -0.278 1.278 22 H -0.265 1.265 23 H -0.276 1.276 24 C 0.107 3.893 25 C -0.153 4.153 26 C -0.183 4.183 27 H 0.099 0.901 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.032 0.968 31 H 0.052 0.948 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.149 0.851 35 H 0.158 0.842 36 H 0.161 0.839 37 H 0.145 0.855 38 H 0.273 0.727 39 H 0.104 0.896 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.131 0.869 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.888 4.233 18.695 19.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.112 4.112 3 H 0.118 0.882 4 C -0.114 4.114 5 C -0.109 4.109 6 C -0.127 4.127 7 C -0.115 4.115 8 C -0.145 4.145 9 C -0.115 4.115 10 C -0.181 4.181 11 C 0.047 3.953 12 F -0.133 7.133 13 C 0.237 3.763 14 O -0.526 6.526 15 N -0.149 5.149 16 C -0.483 4.483 17 H 0.076 0.924 18 C -0.183 4.183 19 N -0.511 5.511 20 Si 0.794 3.206 21 H -0.204 1.204 22 H -0.189 1.189 23 H -0.201 1.201 24 C 0.002 3.998 25 C -0.190 4.190 26 C -0.221 4.221 27 H 0.117 0.883 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.094 0.906 34 H 0.167 0.833 35 H 0.176 0.824 36 H 0.179 0.821 37 H 0.163 0.837 38 H 0.082 0.918 39 H 0.121 0.879 40 H 0.084 0.916 41 H 0.119 0.881 42 H 0.149 0.851 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.714 3.895 18.521 19.004 hybrid contribution 0.869 -0.462 -1.598 1.877 sum -0.846 3.433 16.923 17.288 Atomic orbital electron populations 1.21765 0.91875 1.02270 1.03129 1.21149 0.98436 1.00254 0.91328 0.88194 1.21155 0.99300 0.98592 0.92394 1.20580 1.02903 0.98068 0.89343 1.20168 0.93090 1.00781 0.98680 1.21304 1.00460 0.94701 0.95028 1.21615 0.96588 0.99844 0.96444 1.21393 0.93462 0.96527 1.00135 1.21425 1.02354 0.99218 0.95145 1.18045 0.89229 0.93899 0.94162 1.91449 1.72559 1.69091 1.80204 1.21206 0.83068 0.86075 0.85994 1.90455 1.49151 1.25822 1.87200 1.43224 1.54366 1.12870 1.04445 1.19318 1.18557 1.23028 0.87430 0.92422 1.25781 0.95002 0.96320 1.01242 1.69918 1.11696 1.40893 1.28635 0.85302 0.78646 0.78270 0.78375 1.20396 1.18910 1.20064 1.21170 0.94898 0.78881 1.04845 1.22723 1.02131 1.01800 0.92371 1.23569 1.01600 1.00444 0.96470 0.88253 0.92954 0.93530 0.94879 0.92921 0.87779 0.90605 0.83305 0.82446 0.82137 0.83679 0.91770 0.87874 0.91596 0.88139 0.85144 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 8.60 71.98 0.62 -3.57 16 2 C -0.09 -3.37 2.00 -11.54 -0.02 -3.39 16 3 H 0.10 3.37 6.15 -2.39 -0.01 3.36 16 4 C -0.08 -2.66 3.96 30.60 0.12 -2.53 16 5 C -0.07 -1.83 4.88 29.85 0.15 -1.68 16 6 C -0.13 -3.14 5.14 -19.82 -0.10 -3.24 16 7 C -0.10 -1.90 9.68 22.26 0.22 -1.69 16 8 C -0.13 -2.00 10.04 22.27 0.22 -1.77 16 9 C -0.10 -1.54 10.04 22.26 0.22 -1.31 16 10 C -0.16 -3.36 10.03 22.31 0.22 -3.14 16 11 C 0.07 1.74 7.24 22.37 0.16 1.90 16 12 F -0.15 -4.70 16.57 44.97 0.75 -3.96 16 13 C 0.45 22.92 6.82 87.66 0.60 23.52 16 14 O -0.64 -38.51 15.77 -3.08 -0.05 -38.56 16 15 N -0.43 -22.68 2.90 -613.13 -1.78 -24.46 16 16 C -0.36 -20.80 8.70 84.04 0.73 -20.07 16 17 H 0.06 3.69 7.51 -2.91 -0.02 3.67 16 18 C 0.02 1.13 4.45 84.93 0.38 1.50 16 19 N -0.88 -45.89 11.28 21.66 0.24 -45.65 16 20 Si 0.97 43.26 29.59 68.60 2.03 45.29 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 C 0.11 4.61 2.73 44.99 0.12 4.73 16 25 C -0.15 -6.13 8.70 30.62 0.27 -5.87 16 26 C -0.18 -6.25 8.67 30.62 0.27 -5.98 16 27 H 0.10 2.22 7.02 -2.39 -0.02 2.21 16 28 H 0.05 1.83 5.65 -2.38 -0.01 1.81 16 29 H 0.05 1.52 8.11 -2.39 -0.02 1.50 16 30 H 0.03 1.33 8.09 -2.39 -0.02 1.31 16 31 H 0.05 1.96 8.11 -2.39 -0.02 1.95 16 32 H 0.10 2.09 6.68 -2.39 -0.02 2.08 16 33 H 0.08 1.89 7.79 -2.39 -0.02 1.87 16 34 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 35 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 36 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 37 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 38 H 0.27 13.43 8.32 -92.71 -0.77 12.66 16 39 H 0.10 4.49 6.61 -2.39 -0.02 4.48 16 40 H 0.07 2.97 7.77 -2.39 -0.02 2.95 16 41 H 0.10 3.65 8.14 -2.39 -0.02 3.64 16 42 H 0.13 3.37 8.14 -2.39 -0.02 3.35 16 43 H 0.08 2.83 8.04 -2.39 -0.02 2.81 16 Total: -1.00 -72.72 353.47 6.37 -66.35 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 1.00 Total: 23.58 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: 4.17 Total: -22.60 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -1.54 Total: -70.10 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -0.05 Total: -38.56 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.75 Total: -3.96 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -72.72 6.37 -66.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266230722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.132 kcal (2) G-P(sol) polarization free energy of solvation -72.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds