Wall clock time and date at job start Tue Mar 31 2020 08:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46509 * 119.99893 * 2 1 4 4 C 1.50693 * 109.47482 * 270.00464 * 3 2 1 5 5 H 1.08007 * 120.00090 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00154 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00167 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 119.99821 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.46941 * 90.00769 * 8 6 4 10 10 H 1.48507 * 109.47142 * 210.00318 * 8 6 4 11 11 H 1.48494 * 109.47432 * 330.00433 * 8 6 4 12 12 C 1.38388 * 120.00079 * 180.02562 * 2 1 3 13 13 N 1.32207 * 118.79330 * 359.97438 * 12 2 1 14 14 C 1.33129 * 120.57546 * 180.02562 * 13 12 2 15 15 C 1.40925 * 118.90105 * 0.02562 * 14 13 12 16 16 C 1.41244 * 106.99188 * 179.97438 * 15 14 13 17 17 N 1.30224 * 108.47640 * 359.97438 * 16 15 14 18 18 N 1.36332 * 134.54556 * 179.97438 * 14 13 12 19 19 C 1.46498 * 125.86692 * 0.02562 * 18 14 13 20 20 C 1.52996 * 109.47453 * 59.99605 * 19 18 14 21 21 C 1.53006 * 109.46773 * 180.02562 * 19 18 14 22 22 C 1.53003 * 109.46941 * 299.99690 * 19 18 14 23 23 C 1.40666 * 118.40892 * 0.21438 * 15 14 13 24 24 O 1.35370 * 120.72798 * 180.02562 * 23 15 14 25 25 N 1.32541 * 118.53675 * 359.54335 * 23 15 14 26 26 H 1.09003 * 109.46641 * 269.99533 * 1 2 3 27 27 H 1.08997 * 109.46983 * 29.99018 * 1 2 3 28 28 H 1.08996 * 109.47080 * 149.99568 * 1 2 3 29 29 H 1.08994 * 109.46816 * 30.00816 * 3 2 1 30 30 H 1.09006 * 109.46472 * 150.00532 * 3 2 1 31 31 H 0.97005 * 120.00553 * 179.97438 * 7 6 4 32 32 H 1.08005 * 125.76660 * 179.97438 * 16 15 14 33 33 H 1.09007 * 109.46503 * 60.00000 * 20 19 18 34 34 H 1.08999 * 109.47252 * 179.97438 * 20 19 18 35 35 H 1.08991 * 109.47332 * 300.00521 * 20 19 18 36 36 H 1.08994 * 109.47496 * 59.99438 * 21 19 18 37 37 H 1.09005 * 109.46679 * 180.02562 * 21 19 18 38 38 H 1.09000 * 109.46740 * 299.99504 * 21 19 18 39 39 H 1.08992 * 109.47470 * 60.00348 * 22 19 18 40 40 H 1.08999 * 109.47018 * 180.02562 * 22 19 18 41 41 H 1.09006 * 109.47011 * 299.99877 * 22 19 18 42 42 H 0.96697 * 114.00288 * 90.00368 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7040 -1.4207 5 1 2.0973 1.0964 -2.2417 6 6 3.1268 2.8777 -1.6726 7 7 3.3455 3.2577 -2.9125 8 14 3.7338 3.9288 -0.2527 9 1 5.1069 3.5070 0.1237 10 1 3.7496 5.3555 -0.6644 11 1 2.8274 3.7596 0.9113 12 6 2.1570 -1.1985 -0.0005 13 7 1.4720 -2.3292 -0.0005 14 6 2.1015 -3.5023 -0.0005 15 6 3.5106 -3.5191 0.0000 16 6 3.9073 -4.8747 0.0005 17 7 2.8377 -5.6176 0.0008 18 7 1.6975 -4.8044 -0.0001 19 6 0.3093 -5.2724 0.0001 20 6 -0.4045 -4.7523 -1.2493 21 6 0.2869 -6.8023 0.0012 22 6 -0.4044 -4.7515 1.2492 23 6 4.1945 -2.2899 0.0052 24 8 5.5477 -2.2512 0.0054 25 7 3.4849 -1.1705 0.0000 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8900 -0.5137 28 1 -0.3633 -0.8899 -0.5139 29 1 1.6085 2.0283 0.5139 30 1 3.1500 1.1384 0.5138 31 1 3.8223 4.0836 -3.0898 32 1 4.9256 -5.2345 0.0006 33 1 0.1041 -5.1235 -2.1392 34 1 -1.4372 -5.1009 -1.2494 35 1 -0.3884 -3.6625 -1.2497 36 1 0.7953 -7.1725 0.8915 37 1 -0.7460 -7.1506 0.0009 38 1 0.7955 -7.1737 -0.8884 39 1 -0.3885 -3.6617 1.2489 40 1 -1.4371 -5.1001 1.2495 41 1 0.1041 -5.1221 2.1393 42 1 5.9409 -2.2363 -0.8779 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269304384.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:47 Heat of formation + Delta-G solvation = 96.730856 kcal Electronic energy + Delta-G solvation = -25769.857198 eV Core-core repulsion = 22174.110590 eV Total energy + Delta-G solvation = -3595.746607 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.70698 -39.20153 -37.64120 -36.61459 -35.37845 -32.65668 -32.42592 -30.15659 -29.57210 -28.32588 -27.47129 -27.44774 -25.86812 -23.47830 -23.10842 -22.04291 -20.94652 -19.48411 -18.24205 -17.60960 -16.97813 -16.79544 -15.99140 -15.64870 -15.35890 -14.71519 -14.55919 -14.34738 -14.09146 -13.79423 -13.63167 -13.37081 -12.48956 -12.46738 -12.38883 -12.33738 -12.26279 -11.92179 -11.81317 -11.63334 -11.50067 -11.37809 -11.31890 -11.01281 -10.92020 -10.58185 -10.48072 -10.24541 -10.16206 -9.61049 -9.11758 -8.68552 -8.58406 -8.49496 -7.14952 -6.12138 -4.11294 1.04251 1.80026 2.20678 2.69327 3.24252 3.29021 3.34541 3.36698 3.83253 4.26681 4.29871 4.36599 4.71980 4.74205 4.81759 4.87466 5.03752 5.20790 5.28989 5.33320 5.43436 5.45330 5.60743 5.63224 5.71667 5.73920 5.80276 5.94941 5.96460 6.12497 6.15645 6.16881 6.31048 6.48461 6.63071 6.85148 6.94478 7.38722 7.50380 7.55102 7.59844 7.78989 8.06850 8.43623 8.82898 8.92745 9.47347 11.01036 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.004452 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.395713 B = 6288.375342 C = 7133.371052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.549 5.549 3 C 0.224 3.776 4 C -0.527 4.527 5 H 0.073 0.927 6 C 0.075 3.925 7 N -0.897 5.897 8 Si 0.875 3.125 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.633 3.367 13 N -0.609 5.609 14 C 0.405 3.595 15 C -0.365 4.365 16 C 0.117 3.883 17 N -0.270 5.270 18 N -0.382 5.382 19 C 0.195 3.805 20 C -0.162 4.162 21 C -0.140 4.140 22 C -0.161 4.161 23 C 0.480 3.520 24 O -0.477 6.477 25 N -0.575 5.575 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.034 0.966 30 H 0.045 0.955 31 H 0.265 0.735 32 H 0.191 0.809 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.506 -16.935 6.238 18.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.260 5.260 3 C 0.104 3.896 4 C -0.565 4.565 5 H 0.092 0.908 6 C -0.128 4.128 7 N -0.535 5.535 8 Si 0.702 3.298 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.275 3.725 13 N -0.346 5.346 14 C 0.156 3.844 15 C -0.383 4.383 16 C -0.081 4.081 17 N -0.082 5.082 18 N -0.175 5.175 19 C 0.113 3.887 20 C -0.220 4.220 21 C -0.197 4.197 22 C -0.220 4.220 23 C 0.278 3.722 24 O -0.285 6.285 25 N -0.307 5.307 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.208 0.792 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -5.741 -16.969 6.720 19.133 hybrid contribution 1.369 0.831 0.035 1.602 sum -4.372 -16.138 6.755 18.033 Atomic orbital electron populations 1.21567 0.78548 1.03168 1.00606 1.46515 1.05648 1.02441 1.71390 1.19838 0.92508 0.78615 0.98680 1.21277 1.36990 1.07239 0.91022 0.90845 1.24810 0.95205 0.97222 0.95520 1.69893 1.41430 1.23559 1.18665 0.86871 0.80213 0.79803 0.82911 1.19764 1.21120 1.19086 1.18552 0.83157 0.85489 0.85284 1.66911 1.39230 0.94857 1.33623 1.18486 0.88518 0.86658 0.90758 1.19959 0.95462 0.95426 1.27436 1.23547 0.98296 0.89537 0.96702 1.76816 0.91151 1.17999 1.22272 1.48540 1.05267 0.99690 1.64016 1.20572 0.75921 0.95445 0.96767 1.22247 1.00125 1.03526 0.96113 1.21885 1.02169 0.92082 1.03607 1.22244 1.00138 1.03449 0.96124 1.18583 0.83956 0.85187 0.84505 1.84550 1.13910 1.95608 1.34397 1.67539 1.07511 1.30617 1.24992 0.93729 0.90680 0.90944 0.94847 0.93696 0.92534 0.79179 0.92266 0.90744 0.90356 0.91554 0.91168 0.91510 0.90409 0.90749 0.92367 0.72887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.78 10.43 59.85 0.62 2.41 16 2 N -0.55 -11.67 2.96 -185.31 -0.55 -12.21 16 3 C 0.22 5.33 4.22 -5.19 -0.02 5.31 16 4 C -0.53 -14.61 9.94 -34.44 -0.34 -14.95 16 5 H 0.07 2.28 8.06 -52.48 -0.42 1.85 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 8 Si 0.88 20.96 27.47 -169.99 -4.67 16.29 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 12 C 0.63 13.38 8.17 -322.77 -2.64 10.74 16 13 N -0.61 -11.51 8.00 -13.31 -0.11 -11.61 16 14 C 0.41 7.13 7.11 -156.25 -1.11 6.02 16 15 C -0.37 -6.11 6.19 -106.82 -0.66 -6.77 16 16 C 0.12 1.59 12.05 -17.09 -0.21 1.38 16 17 N -0.27 -3.91 11.50 30.82 0.35 -3.55 16 18 N -0.38 -5.79 3.49 -47.77 -0.17 -5.95 16 19 C 0.20 2.36 1.21 -131.82 -0.16 2.20 16 20 C -0.16 -1.87 8.52 37.16 0.32 -1.56 16 21 C -0.14 -1.37 7.97 37.16 0.30 -1.07 16 22 C -0.16 -1.80 8.52 37.16 0.32 -1.49 16 23 C 0.48 8.62 7.89 -16.33 -0.13 8.49 16 24 O -0.48 -6.98 13.58 -17.80 -0.24 -7.22 16 25 N -0.57 -12.36 9.07 -13.73 -0.12 -12.48 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 28 H 0.07 1.18 7.31 -51.93 -0.38 0.80 16 29 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 30 H 0.05 1.11 6.74 -51.93 -0.35 0.77 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.19 1.81 8.06 -52.48 -0.42 1.38 16 33 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 1.08 7.42 -51.93 -0.39 0.70 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 1.03 7.42 -51.93 -0.39 0.64 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.41 4.00 9.06 45.56 0.41 4.41 16 LS Contribution 351.20 15.07 5.29 5.29 Total: -1.00 -33.79 351.20 -8.52 -42.31 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -5.27 Total: 2.60 kcal Atomic # 6 Polarization: 16.54 SS G_CDS: -3.81 Total: 12.72 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: 0.18 Total: -71.99 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.24 Total: -7.22 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.79 -8.52 -42.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269304384.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.042 kcal (2) G-P(sol) polarization free energy of solvation -33.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds