Wall clock time and date at job start Tue Mar 31 2020 08:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46509 * 119.99893 * 2 1 4 4 C 1.50693 * 109.47482 * 270.00464 * 3 2 1 5 5 H 1.08007 * 120.00090 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00154 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00167 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 119.99821 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.46941 * 90.00769 * 8 6 4 10 10 H 1.48507 * 109.47142 * 210.00318 * 8 6 4 11 11 H 1.48494 * 109.47432 * 330.00433 * 8 6 4 12 12 C 1.38388 * 120.00079 * 180.02562 * 2 1 3 13 13 N 1.32207 * 118.79330 * 359.97438 * 12 2 1 14 14 C 1.33129 * 120.57546 * 180.02562 * 13 12 2 15 15 C 1.40925 * 118.90105 * 0.02562 * 14 13 12 16 16 C 1.41244 * 106.99188 * 179.97438 * 15 14 13 17 17 N 1.30224 * 108.47640 * 359.97438 * 16 15 14 18 18 N 1.36332 * 134.54556 * 179.97438 * 14 13 12 19 19 C 1.46498 * 125.86692 * 0.02562 * 18 14 13 20 20 C 1.52996 * 109.47453 * 59.99605 * 19 18 14 21 21 C 1.53006 * 109.46773 * 180.02562 * 19 18 14 22 22 C 1.53003 * 109.46941 * 299.99690 * 19 18 14 23 23 C 1.40666 * 118.40892 * 0.21438 * 15 14 13 24 24 O 1.35370 * 120.72798 * 180.02562 * 23 15 14 25 25 N 1.32541 * 118.53675 * 359.54335 * 23 15 14 26 26 H 1.09003 * 109.46641 * 269.99533 * 1 2 3 27 27 H 1.08997 * 109.46983 * 29.99018 * 1 2 3 28 28 H 1.08996 * 109.47080 * 149.99568 * 1 2 3 29 29 H 1.08994 * 109.46816 * 30.00816 * 3 2 1 30 30 H 1.09006 * 109.46472 * 150.00532 * 3 2 1 31 31 H 0.97005 * 120.00553 * 179.97438 * 7 6 4 32 32 H 1.08005 * 125.76660 * 179.97438 * 16 15 14 33 33 H 1.09007 * 109.46503 * 60.00000 * 20 19 18 34 34 H 1.08999 * 109.47252 * 179.97438 * 20 19 18 35 35 H 1.08991 * 109.47332 * 300.00521 * 20 19 18 36 36 H 1.08994 * 109.47496 * 59.99438 * 21 19 18 37 37 H 1.09005 * 109.46679 * 180.02562 * 21 19 18 38 38 H 1.09000 * 109.46740 * 299.99504 * 21 19 18 39 39 H 1.08992 * 109.47470 * 60.00348 * 22 19 18 40 40 H 1.08999 * 109.47018 * 180.02562 * 22 19 18 41 41 H 1.09006 * 109.47011 * 299.99877 * 22 19 18 42 42 H 0.96697 * 114.00288 * 90.00368 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7040 -1.4207 5 1 2.0973 1.0964 -2.2417 6 6 3.1268 2.8777 -1.6726 7 7 3.3455 3.2577 -2.9125 8 14 3.7338 3.9288 -0.2527 9 1 5.1069 3.5070 0.1237 10 1 3.7496 5.3555 -0.6644 11 1 2.8274 3.7596 0.9113 12 6 2.1570 -1.1985 -0.0005 13 7 1.4720 -2.3292 -0.0005 14 6 2.1015 -3.5023 -0.0005 15 6 3.5106 -3.5191 0.0000 16 6 3.9073 -4.8747 0.0005 17 7 2.8377 -5.6176 0.0008 18 7 1.6975 -4.8044 -0.0001 19 6 0.3093 -5.2724 0.0001 20 6 -0.4045 -4.7523 -1.2493 21 6 0.2869 -6.8023 0.0012 22 6 -0.4044 -4.7515 1.2492 23 6 4.1945 -2.2899 0.0052 24 8 5.5477 -2.2512 0.0054 25 7 3.4849 -1.1705 0.0000 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8900 -0.5137 28 1 -0.3633 -0.8899 -0.5139 29 1 1.6085 2.0283 0.5139 30 1 3.1500 1.1384 0.5138 31 1 3.8223 4.0836 -3.0898 32 1 4.9256 -5.2345 0.0006 33 1 0.1041 -5.1235 -2.1392 34 1 -1.4372 -5.1009 -1.2494 35 1 -0.3884 -3.6625 -1.2497 36 1 0.7953 -7.1725 0.8915 37 1 -0.7460 -7.1506 0.0009 38 1 0.7955 -7.1737 -0.8884 39 1 -0.3885 -3.6617 1.2489 40 1 -1.4371 -5.1001 1.2495 41 1 0.1041 -5.1221 2.1393 42 1 5.9409 -2.2363 -0.8779 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269304384.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:46 Heat of formation + Delta-G solvation = 73.701225 kcal Electronic energy + Delta-G solvation = -25770.855837 eV Core-core repulsion = 22174.110590 eV Total energy + Delta-G solvation = -3596.745247 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.98628 -40.51811 -38.96298 -37.62311 -36.89641 -34.62731 -33.92040 -31.34402 -31.05521 -30.02961 -28.35895 -28.32129 -27.36354 -24.98888 -24.65954 -23.19799 -22.45059 -20.75565 -19.59514 -19.08548 -18.77303 -18.12644 -17.35746 -17.04849 -16.56725 -16.33380 -15.89576 -15.54323 -15.38519 -15.25637 -14.71204 -14.64732 -14.42904 -13.68068 -13.62142 -13.35902 -13.24730 -13.18280 -13.12115 -12.88862 -12.75531 -12.71586 -12.51990 -12.40689 -12.27066 -12.06861 -11.99731 -11.77648 -11.71281 -11.44437 -10.78488 -10.59823 -10.07412 -9.75536 -8.66630 -8.29153 -6.33881 -0.29117 0.40606 1.03117 1.38459 1.41523 1.49689 1.51527 1.88275 2.35190 2.50348 2.87679 3.05688 3.17332 3.46043 3.74191 3.79079 3.80816 3.93988 4.06462 4.21126 4.45424 4.57522 4.61744 4.63654 4.72695 4.73066 4.81733 4.82570 4.86167 4.86859 4.95297 5.05475 5.11407 5.22909 5.24304 5.46613 5.48559 5.62968 5.91360 6.00586 6.31527 6.47838 6.58264 6.62093 6.66161 7.26571 7.40760 8.87680 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.004452 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.395713 B = 6288.375342 C = 7133.371052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.567 5.567 3 C 0.239 3.761 4 C -0.526 4.526 5 H 0.023 0.977 6 C 0.017 3.983 7 N -0.946 5.946 8 Si 0.946 3.054 9 H -0.271 1.271 10 H -0.280 1.280 11 H -0.241 1.241 12 C 0.616 3.384 13 N -0.604 5.604 14 C 0.382 3.618 15 C -0.370 4.370 16 C 0.128 3.872 17 N -0.270 5.270 18 N -0.380 5.380 19 C 0.182 3.818 20 C -0.156 4.156 21 C -0.131 4.131 22 C -0.155 4.155 23 C 0.480 3.520 24 O -0.473 6.473 25 N -0.619 5.619 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.036 0.964 31 H 0.268 0.732 32 H 0.234 0.766 33 H 0.050 0.950 34 H 0.106 0.894 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.105 0.895 41 H 0.053 0.947 42 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.748 -18.683 8.010 20.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.279 5.279 3 C 0.117 3.883 4 C -0.565 4.565 5 H 0.042 0.958 6 C -0.181 4.181 7 N -0.587 5.587 8 Si 0.769 3.231 9 H -0.196 1.196 10 H -0.205 1.205 11 H -0.165 1.165 12 C 0.257 3.743 13 N -0.341 5.341 14 C 0.132 3.868 15 C -0.387 4.387 16 C -0.070 4.070 17 N -0.083 5.083 18 N -0.172 5.172 19 C 0.101 3.899 20 C -0.214 4.214 21 C -0.189 4.189 22 C -0.213 4.213 23 C 0.280 3.720 24 O -0.284 6.284 25 N -0.354 5.354 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.250 0.750 33 H 0.069 0.931 34 H 0.125 0.875 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.119 0.881 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.124 0.876 41 H 0.072 0.928 42 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -5.992 -18.808 8.489 21.488 hybrid contribution 1.459 1.152 -0.607 1.956 sum -4.533 -17.657 7.881 19.860 Atomic orbital electron populations 1.21668 0.76642 1.03108 1.02087 1.46464 1.06785 1.01808 1.72882 1.19467 0.92828 0.80268 0.95727 1.21421 1.36477 1.06608 0.91944 0.95820 1.25732 0.95288 0.98687 0.98357 1.70049 1.42860 1.24463 1.21283 0.85748 0.79847 0.77648 0.79884 1.19600 1.20537 1.16463 1.18712 0.83410 0.86036 0.86117 1.66899 1.39002 0.94878 1.33332 1.18834 0.89390 0.87224 0.91385 1.20220 0.95246 0.96402 1.26840 1.24178 0.99899 0.87768 0.95131 1.76827 0.91281 1.18037 1.22126 1.48990 1.06558 0.98741 1.62903 1.20999 0.74552 0.97094 0.97286 1.22213 1.01956 1.01684 0.95574 1.21861 1.04071 0.89899 1.03062 1.22205 1.01877 1.01807 0.95396 1.18733 0.84830 0.84943 0.83517 1.84510 1.12270 1.95475 1.36149 1.67501 1.08139 1.32593 1.27118 0.91342 0.90985 0.90721 0.93272 0.94552 0.92342 0.75027 0.93124 0.87538 0.93056 0.91922 0.88117 0.92128 0.92814 0.87592 0.92825 0.70515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.69 10.43 127.77 1.33 5.02 16 2 N -0.57 -24.55 2.96 -740.20 -2.19 -26.74 16 3 C 0.24 11.47 4.22 85.63 0.36 11.83 16 4 C -0.53 -30.17 9.94 25.60 0.25 -29.92 16 5 H 0.02 1.55 8.06 -2.91 -0.02 1.52 16 6 C 0.02 1.00 5.47 84.65 0.46 1.46 16 7 N -0.95 -58.64 13.96 21.45 0.30 -58.34 16 8 Si 0.95 43.29 27.47 68.60 1.88 45.17 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 12 C 0.62 26.61 8.17 261.47 2.14 28.75 16 13 N -0.60 -23.18 8.00 -196.01 -1.57 -24.75 16 14 C 0.38 13.32 7.11 134.18 0.95 14.27 16 15 C -0.37 -12.05 6.19 -21.29 -0.13 -12.19 16 16 C 0.13 3.18 12.05 85.67 1.03 4.21 16 17 N -0.27 -7.28 11.50 -56.42 -0.65 -7.92 16 18 N -0.38 -11.03 3.49 -305.04 -1.07 -12.10 16 19 C 0.18 4.06 1.21 3.61 0.00 4.06 16 20 C -0.16 -3.40 8.52 71.98 0.61 -2.79 16 21 C -0.13 -2.20 7.97 71.98 0.57 -1.63 16 22 C -0.15 -3.18 8.52 71.98 0.61 -2.56 16 23 C 0.48 17.15 7.89 85.18 0.67 17.82 16 24 O -0.47 -13.35 13.58 -86.61 -1.18 -14.52 16 25 N -0.62 -27.16 9.07 -310.24 -2.81 -29.97 16 26 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 28 H 0.07 2.48 7.31 -2.39 -0.02 2.47 16 29 H 0.05 2.19 7.13 -2.39 -0.02 2.18 16 30 H 0.04 1.81 6.74 -2.38 -0.02 1.79 16 31 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 32 H 0.23 3.53 8.06 -2.91 -0.02 3.51 16 33 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.05 1.41 7.42 -2.39 -0.02 1.39 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.05 1.38 7.42 -2.39 -0.02 1.36 16 40 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 42 H 0.43 7.90 9.06 -74.06 -0.67 7.23 16 Total: -1.00 -76.38 351.20 1.92 -74.46 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.32 Total: 16.38 kcal Atomic # 6 Polarization: 29.46 SS G_CDS: 8.88 Total: 38.34 kcal Atomic # 7 Polarization: -151.83 SS G_CDS: -7.98 Total: -159.82 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -1.18 Total: -14.52 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.88 Total: 45.17 kcal Total: -76.38 1.92 -74.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269304384.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.158 kcal (2) G-P(sol) polarization free energy of solvation -76.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds