Wall clock time and date at job start Tue Mar 31 2020 08:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46814 * 2 1 4 4 H 1.09000 * 109.47383 * 54.99274 * 3 2 1 5 5 C 1.53002 * 109.47501 * 174.99645 * 3 2 1 6 6 C 1.47198 * 109.47256 * 184.99713 * 5 3 2 7 7 N 4.86398 * 126.39884 * 4.97438 * 2 1 3 8 8 N 1.46505 * 109.47246 * 294.99987 * 3 2 1 9 9 C 1.34775 * 120.00267 * 84.99824 * 8 3 2 10 10 O 1.21596 * 119.99612 * 0.02562 * 9 8 3 11 11 N 1.34774 * 119.99859 * 180.02562 * 9 8 3 12 12 C 1.40197 * 119.99701 * 180.02562 * 11 9 8 13 13 C 1.40400 * 125.97326 * 0.22510 * 12 11 9 14 14 C 1.35244 * 107.86833 * 180.14908 * 13 12 11 15 15 C 1.50703 * 126.07226 * 179.90760 * 14 13 12 16 16 N 1.34968 * 107.85703 * 359.64215 * 14 13 12 17 17 C 1.46496 * 125.97468 * 180.21191 * 16 14 13 18 18 C 1.50702 * 109.47635 * 89.99791 * 17 16 14 19 19 H 1.07999 * 119.99790 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99972 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00160 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99693 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47113 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46540 * 119.99926 * 22 20 18 25 25 H 1.48495 * 109.46996 * 239.99739 * 22 20 18 26 26 N 1.31208 * 125.97218 * 179.97438 * 12 11 9 27 27 H 1.08993 * 109.47159 * 60.00746 * 1 2 3 28 28 H 1.09006 * 109.46517 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47403 * 299.99981 * 1 2 3 30 30 H 1.08994 * 109.47403 * 240.00019 * 2 1 3 31 31 H 1.09002 * 109.47363 * 119.99435 * 2 1 3 32 32 H 1.09000 * 109.47010 * 305.00132 * 5 3 2 33 33 H 1.09000 * 109.46763 * 64.99698 * 5 3 2 34 34 H 0.97005 * 119.99515 * 265.00407 * 8 3 2 35 35 H 0.96995 * 120.00439 * 359.97438 * 11 9 8 36 36 H 1.08001 * 126.06886 * 0.03560 * 13 12 11 37 37 H 1.09002 * 109.47152 * 269.68666 * 15 14 13 38 38 H 1.09001 * 109.46980 * 149.68766 * 15 14 13 39 39 H 1.09004 * 109.47113 * 29.68747 * 15 14 13 40 40 H 1.09001 * 109.47030 * 210.00125 * 17 16 14 41 41 H 1.09005 * 109.47259 * 329.99077 * 17 16 14 42 42 H 0.96997 * 120.00168 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 0.8417 5 6 3.5648 1.4445 0.1258 6 6 4.0454 2.8306 0.2464 7 7 4.4163 3.9003 0.3395 8 7 1.6523 2.0975 -1.2518 9 6 0.4350 2.6644 -1.3671 10 8 -0.3414 2.6325 -0.4318 11 7 0.0784 3.2664 -2.5189 12 6 -1.1877 3.8565 -2.6385 13 6 -2.1760 3.8975 -1.6421 14 6 -3.2481 4.5489 -2.1475 15 6 -4.5418 4.8228 -1.4247 16 7 -2.9514 4.9153 -3.4122 17 6 -3.8319 5.6490 -4.3246 18 6 -3.6070 7.1297 -4.1578 19 1 -2.8810 7.4885 -3.4432 20 6 -4.3280 8.0265 -4.9174 21 7 -5.2116 7.5896 -5.7880 22 14 -4.0496 9.8620 -4.7101 23 1 -3.0096 10.0911 -3.6752 24 1 -3.5997 10.4431 -6.0005 25 1 -5.3177 10.5106 -4.2904 26 7 -1.6545 4.4711 -3.6997 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 3.8570 0.8803 1.0114 33 1 4.0029 0.9838 -0.7595 34 1 2.2719 2.1231 -1.9978 35 1 0.6978 3.2922 -3.2648 36 1 -2.0953 3.4810 -0.6489 37 1 -5.2358 4.0002 -1.5975 38 1 -4.9771 5.7499 -1.7977 39 1 -4.3482 4.9165 -0.3561 40 1 -3.6108 5.3614 -5.3525 41 1 -4.8710 5.4113 -4.0964 42 1 -5.7191 8.2204 -6.3221 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274662196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:38 Heat of formation + Delta-G solvation = 43.802717 kcal Electronic energy + Delta-G solvation = -24452.098862 eV Core-core repulsion = 20854.057118 eV Total energy + Delta-G solvation = -3598.041744 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.30155 -41.12408 -38.39294 -36.89567 -36.07482 -35.31406 -33.59340 -32.69820 -32.33453 -31.33652 -28.53378 -27.84636 -25.68305 -24.92723 -23.31919 -21.65123 -21.31754 -21.10456 -19.19820 -18.79125 -18.31997 -17.78337 -17.31408 -16.90037 -16.52810 -16.18992 -15.76881 -15.52434 -15.05714 -14.97573 -14.68050 -14.45038 -14.28146 -13.87589 -13.79138 -13.69829 -13.56274 -13.54034 -13.15705 -12.96707 -12.81024 -12.70149 -12.44184 -12.32895 -12.27178 -12.05802 -11.85511 -11.60339 -11.49765 -11.27041 -10.99105 -10.74659 -10.06697 -9.53736 -9.05045 -8.33492 -6.51452 1.04836 1.17350 1.35073 1.36967 1.49840 1.72254 1.83028 1.90341 2.12569 2.34412 2.45992 2.95361 3.08532 3.20743 3.83038 3.89074 4.17660 4.25539 4.28530 4.49314 4.61269 4.71283 4.77278 4.78408 4.83419 4.87520 4.96390 5.02610 5.03903 5.13197 5.15689 5.23125 5.30498 5.34889 5.53124 5.65155 5.69021 5.80808 5.91910 6.01618 6.28530 6.61757 6.69239 6.79763 7.17281 7.19722 7.52314 8.72101 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.020374 B = 0.003014 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.941837 B = 9286.402076 C =10079.989922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.164 3.836 4 H 0.075 0.925 5 C -0.023 4.023 6 C 0.228 3.772 7 N -0.510 5.510 8 N -0.724 5.724 9 C 0.711 3.289 10 O -0.588 6.588 11 N -0.640 5.640 12 C 0.293 3.707 13 C -0.295 4.295 14 C 0.085 3.915 15 C -0.085 4.085 16 N -0.345 5.345 17 C 0.276 3.724 18 C -0.553 4.553 19 H 0.047 0.953 20 C 0.024 3.976 21 N -0.917 5.917 22 Si 0.970 3.030 23 H -0.277 1.277 24 H -0.274 1.274 25 H -0.266 1.266 26 N -0.364 5.364 27 H 0.029 0.971 28 H 0.052 0.948 29 H 0.040 0.960 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.171 0.829 33 H 0.157 0.843 34 H 0.413 0.587 35 H 0.418 0.582 36 H 0.168 0.832 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.024 0.976 41 H 0.052 0.948 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.169 -19.307 11.849 27.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C 0.058 3.942 4 H 0.093 0.907 5 C -0.062 4.062 6 C -0.088 4.088 7 N -0.188 5.188 8 N -0.381 5.381 9 C 0.410 3.590 10 O -0.465 6.465 11 N -0.292 5.292 12 C 0.038 3.962 13 C -0.326 4.326 14 C -0.045 4.045 15 C -0.143 4.143 16 N -0.127 5.127 17 C 0.157 3.843 18 C -0.591 4.591 19 H 0.065 0.935 20 C -0.177 4.177 21 N -0.555 5.555 22 Si 0.794 3.206 23 H -0.201 1.201 24 H -0.199 1.199 25 H -0.190 1.190 26 N -0.194 5.194 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.108 0.892 31 H 0.127 0.873 32 H 0.188 0.812 33 H 0.174 0.826 34 H 0.250 0.750 35 H 0.255 0.745 36 H 0.185 0.815 37 H 0.112 0.888 38 H 0.084 0.916 39 H 0.119 0.881 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.111 -17.290 11.456 25.662 hybrid contribution 0.037 0.801 -0.454 0.922 sum 15.148 -16.489 11.001 24.948 Atomic orbital electron populations 1.21758 0.97364 1.00243 1.01127 1.21935 0.94751 0.94009 1.05278 1.21078 0.93129 0.94599 0.85392 0.90695 1.20060 0.92590 0.83046 1.10549 1.30000 0.91814 0.95685 0.91329 1.81330 1.11429 1.14778 1.11267 1.45115 1.14157 1.60174 1.18674 1.15780 0.83481 0.78147 0.81577 1.90861 1.52200 1.64368 1.39029 1.41479 1.13164 1.57722 1.16843 1.18972 0.87518 0.96466 0.93263 1.21403 0.93055 1.15264 1.02874 1.21750 0.99324 0.97379 0.86081 1.20486 0.90649 1.02941 1.00220 1.48738 1.10071 1.42423 1.11515 1.19213 0.87273 0.90071 0.87694 1.21471 1.23214 0.91129 1.23289 0.93503 1.25710 0.94087 1.04018 0.93928 1.70000 1.24634 1.36912 1.23985 0.85326 0.78454 0.78619 0.78171 1.20134 1.19892 1.19036 1.77156 0.96060 1.23268 1.22965 0.95205 0.92854 0.94064 0.89168 0.87294 0.81209 0.82574 0.75041 0.74491 0.81470 0.88844 0.91574 0.88091 0.95778 0.93031 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.51 71.98 0.61 -1.86 16 2 C -0.12 -0.76 5.61 30.59 0.17 -0.59 16 3 C 0.16 1.44 2.23 44.99 0.10 1.54 16 4 H 0.07 1.12 7.57 -2.39 -0.02 1.10 16 5 C -0.02 -0.02 5.25 28.79 0.15 0.13 16 6 C 0.23 3.09 15.14 89.44 1.35 4.45 16 7 N -0.51 -12.23 18.54 20.01 0.37 -11.86 16 8 N -0.72 -10.25 4.73 -457.80 -2.17 -12.41 16 9 C 0.71 18.62 7.10 179.06 1.27 19.89 16 10 O -0.59 -19.16 10.61 -4.02 -0.04 -19.20 16 11 N -0.64 -19.26 5.46 -321.23 -1.75 -21.01 16 12 C 0.29 12.09 8.11 133.31 1.08 13.17 16 13 C -0.30 -12.27 9.52 22.11 0.21 -12.06 16 14 C 0.08 3.66 6.93 41.39 0.29 3.95 16 15 C -0.08 -2.91 9.89 71.24 0.70 -2.21 16 16 N -0.34 -17.08 3.59 -338.44 -1.22 -18.30 16 17 C 0.28 14.91 5.81 85.63 0.50 15.41 16 18 C -0.55 -31.69 9.39 25.60 0.24 -31.45 16 19 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 20 C 0.02 1.31 5.46 84.66 0.46 1.77 16 21 N -0.92 -52.36 13.29 21.45 0.28 -52.08 16 22 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 26 N -0.36 -17.43 12.59 -54.44 -0.69 -18.12 16 27 H 0.03 0.69 5.65 -2.39 -0.01 0.68 16 28 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.04 0.85 7.84 -2.39 -0.02 0.83 16 30 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.17 -1.11 8.14 -2.39 -0.02 -1.13 16 33 H 0.16 -0.98 8.14 -2.39 -0.02 -1.00 16 34 H 0.41 3.30 8.62 -92.70 -0.80 2.51 16 35 H 0.42 10.00 8.84 -92.71 -0.82 9.18 16 36 H 0.17 6.70 5.91 -2.91 -0.02 6.69 16 37 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 38 H 0.07 2.48 7.71 -2.39 -0.02 2.47 16 39 H 0.10 2.90 8.14 -2.38 -0.02 2.88 16 40 H 0.02 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.05 2.75 7.65 -2.38 -0.02 2.73 16 42 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -83.57 359.65 3.41 -80.16 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -0.55 Total: 14.67 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 7.14 Total: 12.14 kcal Atomic # 7 Polarization: -128.62 SS G_CDS: -5.16 Total: -133.78 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.04 Total: -19.20 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -83.57 3.41 -80.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274662196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.963 kcal (2) G-P(sol) polarization free energy of solvation -83.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds