Wall clock time and date at job start Tue Mar 31 2020 08:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46965 * 2 1 4 4 H 1.09001 * 109.46949 * 55.00216 * 3 2 1 5 5 C 1.50702 * 109.47143 * 174.99854 * 3 2 1 6 6 H 1.08000 * 119.99436 * 120.00105 * 5 3 2 7 7 C 1.37876 * 120.00064 * 300.00514 * 5 3 2 8 8 N 1.31512 * 119.99791 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99875 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47225 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47557 * 119.99894 * 9 7 5 12 12 H 1.48499 * 109.46868 * 239.99945 * 9 7 5 13 13 N 1.46496 * 109.47236 * 295.00555 * 3 2 1 14 14 C 1.34778 * 120.00684 * 84.99510 * 13 3 2 15 15 O 1.21277 * 119.99325 * 355.56547 * 14 13 3 16 16 C 1.50694 * 120.00072 * 175.55671 * 14 13 3 17 17 C 1.52997 * 115.55209 * 294.18135 * 16 14 13 18 18 C 1.50699 * 109.47229 * 305.40387 * 17 16 14 19 19 C 1.38244 * 119.97338 * 273.65422 * 18 17 16 20 20 C 1.38198 * 120.02067 * 179.76575 * 19 18 17 21 21 C 1.38460 * 119.97954 * 0.51316 * 20 19 18 22 22 F 1.35098 * 120.03194 * 179.76286 * 21 20 19 23 23 C 1.38467 * 119.94554 * 359.74690 * 21 20 19 24 24 C 1.38200 * 119.97277 * 359.97438 * 23 21 20 25 25 C 1.52999 * 117.49857 * 148.51370 * 16 14 13 26 26 C 1.52995 * 117.49851 * 79.85649 * 16 14 13 27 27 H 1.08999 * 109.47306 * 299.99415 * 1 2 3 28 28 H 1.09000 * 109.47400 * 59.99602 * 1 2 3 29 29 H 1.08999 * 109.46973 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46991 * 120.00105 * 2 1 3 31 31 H 1.08999 * 109.47306 * 240.00585 * 2 1 3 32 32 H 0.97006 * 119.99636 * 180.02562 * 8 7 5 33 33 H 0.97007 * 119.99561 * 265.00172 * 13 3 2 34 34 H 1.09002 * 109.47289 * 65.40649 * 17 16 14 35 35 H 1.08999 * 109.47382 * 185.40356 * 17 16 14 36 36 H 1.07997 * 119.98792 * 0.02653 * 19 18 17 37 37 H 1.08005 * 120.01306 * 180.25569 * 20 19 18 38 38 H 1.07993 * 120.01038 * 179.97438 * 23 21 20 39 39 H 1.07997 * 119.98486 * 180.02562 * 24 23 21 40 40 H 1.09001 * 117.49928 * 0.02562 * 25 16 14 41 41 H 1.08997 * 117.50078 * 145.01838 * 25 16 14 42 42 H 1.09007 * 117.50116 * 214.97559 * 26 16 14 43 43 H 1.09002 * 117.50267 * 359.97438 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3374 2.1732 9 14 6.0049 0.8814 1.3818 10 1 6.5986 1.5465 0.1943 11 1 6.3990 1.6168 2.6102 12 1 6.4970 -0.5173 1.4628 13 7 1.6523 2.0976 -1.2517 14 6 0.4350 2.6644 -1.3669 15 8 -0.3690 2.5628 -0.4646 16 6 0.0730 3.4246 -2.6167 17 6 0.8702 4.7069 -2.8634 18 6 0.7684 5.6020 -1.6554 19 6 -0.2954 6.4761 -1.5312 20 6 -0.3923 7.2940 -0.4214 21 6 0.5820 7.2453 0.5611 22 9 0.4908 8.0478 1.6441 23 6 1.6499 6.3732 0.4330 24 6 1.7417 5.5522 -0.6748 25 6 -1.3935 3.4096 -3.0529 26 6 -0.3522 2.6106 -3.8404 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 3.8293 -0.0604 2.9502 33 1 2.2718 2.1232 -1.9978 34 1 1.9157 4.4559 -3.0426 35 1 0.4665 5.2240 -3.7338 36 1 -1.0531 6.5169 -2.2996 37 1 -1.2257 7.9739 -0.3225 38 1 2.4106 6.3347 1.1986 39 1 2.5743 4.8716 -0.7747 40 1 -2.0965 2.8503 -2.4356 41 1 -1.7901 4.3131 -3.5159 42 1 -0.0642 2.9888 -4.8214 43 1 -0.3696 1.5252 -3.7417 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276080019.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:17 Heat of formation + Delta-G solvation = -46.487163 kcal Electronic energy + Delta-G solvation = -25684.881040 eV Core-core repulsion = 22030.711321 eV Total energy + Delta-G solvation = -3654.169719 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.73228 -39.97097 -38.59270 -36.63759 -34.84489 -32.35471 -31.91355 -30.99607 -30.80132 -27.24245 -26.68072 -23.67523 -22.92451 -22.50268 -22.28945 -21.40927 -19.63206 -18.93301 -17.54680 -16.97783 -16.19540 -15.97867 -15.45902 -15.34973 -15.18734 -14.99363 -14.49716 -13.95553 -13.81158 -13.67471 -13.42462 -13.27543 -12.70544 -12.59173 -12.18362 -11.89672 -11.78571 -11.71795 -11.48551 -11.42485 -11.24994 -10.99067 -10.87313 -10.82497 -10.40495 -10.31420 -10.21820 -9.86790 -9.58774 -9.04145 -8.93124 -8.87711 -8.50398 -8.37574 -7.78099 -6.13538 -4.23032 1.27614 1.40825 3.21703 3.29611 3.31400 3.34189 3.65199 3.87682 4.09449 4.36156 4.41893 4.67980 4.82410 4.88267 4.99739 5.05689 5.16946 5.20325 5.37221 5.40151 5.53717 5.65342 5.70944 5.79049 5.95969 6.04052 6.07880 6.19547 6.22475 6.26517 6.40672 6.43452 6.48413 6.67403 6.68637 7.05326 7.05895 7.21678 7.38945 7.49143 7.62211 7.75017 7.90459 8.18545 8.70826 8.78726 9.19084 9.45376 10.91705 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.011214 B = 0.005584 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.330616 B = 5012.674949 C = 6476.416178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.273 3.727 4 H 0.047 0.953 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.704 5.704 14 C 0.539 3.461 15 O -0.540 6.540 16 C -0.151 4.151 17 C -0.034 4.034 18 C -0.089 4.089 19 C -0.083 4.083 20 C -0.157 4.157 21 C 0.091 3.909 22 F -0.145 7.145 23 C -0.146 4.146 24 C -0.071 4.071 25 C -0.147 4.147 26 C -0.162 4.162 27 H 0.048 0.952 28 H 0.040 0.960 29 H 0.019 0.981 30 H 0.097 0.903 31 H 0.030 0.970 32 H 0.263 0.737 33 H 0.387 0.613 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.349 9.720 -11.420 15.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.065 0.935 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.725 3.275 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.352 5.352 14 C 0.323 3.677 15 O -0.418 6.418 16 C -0.154 4.154 17 C -0.072 4.072 18 C -0.089 4.089 19 C -0.101 4.101 20 C -0.176 4.176 21 C 0.072 3.928 22 F -0.124 7.124 23 C -0.165 4.165 24 C -0.090 4.090 25 C -0.184 4.184 26 C -0.199 4.199 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.039 0.961 30 H 0.116 0.884 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.219 0.781 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.884 9.576 -10.500 15.380 hybrid contribution 1.274 0.016 0.134 1.282 sum -4.610 9.591 -10.365 14.855 Atomic orbital electron populations 1.21858 0.98331 0.97767 1.01370 1.21936 0.92628 0.99967 1.02131 1.18751 0.94051 0.89130 0.80934 0.93540 1.21252 0.90714 1.38944 1.06153 0.92086 1.24875 0.98424 0.94856 0.95455 1.69909 1.34979 1.37639 1.09318 0.86453 0.85095 0.77810 0.78106 1.19738 1.20921 1.20906 1.46426 1.14586 1.55907 1.18241 1.19157 0.82824 0.79111 0.86604 1.90671 1.49681 1.60619 1.40851 1.21582 0.99326 0.98328 0.96213 1.20040 1.00608 0.91490 0.95034 1.19786 0.95160 0.97054 0.96937 1.20769 0.97246 0.94889 0.97188 1.21017 0.99318 1.02515 0.94753 1.17731 0.97123 0.92924 0.85064 1.91470 1.96239 1.71671 1.52997 1.21173 0.98419 0.96941 0.99930 1.21071 0.98941 0.96739 0.92199 1.22941 0.91101 1.02212 1.02174 1.23059 1.03215 0.98971 0.94701 0.93263 0.94091 0.96145 0.88443 0.95146 0.92641 0.78108 0.89920 0.90224 0.85492 0.85198 0.84733 0.84453 0.88031 0.88524 0.88222 0.88399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.47 37.16 0.31 -2.73 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.62 2.24 -69.08 -0.15 6.46 16 4 H 0.05 1.33 7.65 -51.93 -0.40 0.93 16 5 C -0.53 -13.49 8.73 -34.44 -0.30 -13.79 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.36 11.29 55.43 0.63 -23.73 16 9 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 10 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.70 -13.78 5.02 -54.93 -0.28 -14.05 16 14 C 0.54 10.12 4.82 -10.99 -0.05 10.07 16 15 O -0.54 -12.36 13.51 5.56 0.08 -12.28 16 16 C -0.15 -2.08 2.01 -155.67 -0.31 -2.39 16 17 C -0.03 -0.40 5.30 -27.88 -0.15 -0.55 16 18 C -0.09 -1.22 4.67 -104.62 -0.49 -1.71 16 19 C -0.08 -1.04 9.71 -39.59 -0.38 -1.43 16 20 C -0.16 -2.08 10.03 -39.51 -0.40 -2.48 16 21 C 0.09 1.37 7.30 -39.42 -0.29 1.08 16 22 F -0.15 -2.24 17.27 2.25 0.04 -2.20 16 23 C -0.15 -2.28 10.03 -39.51 -0.40 -2.68 16 24 C -0.07 -1.10 9.25 -39.59 -0.37 -1.47 16 25 C -0.15 -1.79 9.74 -26.70 -0.26 -2.05 16 26 C -0.16 -1.83 9.96 -26.70 -0.27 -2.09 16 27 H 0.05 1.19 7.80 -51.93 -0.41 0.78 16 28 H 0.04 0.89 5.54 -51.93 -0.29 0.60 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.39 6.66 8.54 -40.82 -0.35 6.32 16 34 H 0.08 0.90 8.06 -51.93 -0.42 0.48 16 35 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 36 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 38 H 0.13 2.00 8.06 -52.49 -0.42 1.57 16 39 H 0.14 2.18 8.06 -52.49 -0.42 1.76 16 40 H 0.10 1.43 8.00 -51.93 -0.42 1.01 16 41 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.10 0.87 8.14 -51.92 -0.42 0.44 16 43 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 359.53 15.07 5.42 5.42 Total: -1.00 -29.80 359.53 -9.22 -39.02 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -6.35 Total: 9.93 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -3.74 Total: -17.30 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.35 Total: -37.78 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.08 Total: -12.28 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.80 -9.22 -39.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276080019.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.464 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds