Wall clock time and date at job start Tue Mar 31 2020 08:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46965 * 2 1 4 4 H 1.09001 * 109.46949 * 55.00216 * 3 2 1 5 5 C 1.50702 * 109.47143 * 174.99854 * 3 2 1 6 6 H 1.08000 * 119.99436 * 120.00105 * 5 3 2 7 7 C 1.37876 * 120.00064 * 300.00514 * 5 3 2 8 8 N 1.31512 * 119.99791 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99875 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47225 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47557 * 119.99894 * 9 7 5 12 12 H 1.48499 * 109.46868 * 239.99945 * 9 7 5 13 13 N 1.46496 * 109.47236 * 295.00555 * 3 2 1 14 14 C 1.34778 * 120.00684 * 84.99510 * 13 3 2 15 15 O 1.21277 * 119.99325 * 355.56547 * 14 13 3 16 16 C 1.50694 * 120.00072 * 175.55671 * 14 13 3 17 17 C 1.52997 * 115.55209 * 294.18135 * 16 14 13 18 18 C 1.50699 * 109.47229 * 305.40387 * 17 16 14 19 19 C 1.38244 * 119.97338 * 273.65422 * 18 17 16 20 20 C 1.38198 * 120.02067 * 179.76575 * 19 18 17 21 21 C 1.38460 * 119.97954 * 0.51316 * 20 19 18 22 22 F 1.35098 * 120.03194 * 179.76286 * 21 20 19 23 23 C 1.38467 * 119.94554 * 359.74690 * 21 20 19 24 24 C 1.38200 * 119.97277 * 359.97438 * 23 21 20 25 25 C 1.52999 * 117.49857 * 148.51370 * 16 14 13 26 26 C 1.52995 * 117.49851 * 79.85649 * 16 14 13 27 27 H 1.08999 * 109.47306 * 299.99415 * 1 2 3 28 28 H 1.09000 * 109.47400 * 59.99602 * 1 2 3 29 29 H 1.08999 * 109.46973 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46991 * 120.00105 * 2 1 3 31 31 H 1.08999 * 109.47306 * 240.00585 * 2 1 3 32 32 H 0.97006 * 119.99636 * 180.02562 * 8 7 5 33 33 H 0.97007 * 119.99561 * 265.00172 * 13 3 2 34 34 H 1.09002 * 109.47289 * 65.40649 * 17 16 14 35 35 H 1.08999 * 109.47382 * 185.40356 * 17 16 14 36 36 H 1.07997 * 119.98792 * 0.02653 * 19 18 17 37 37 H 1.08005 * 120.01306 * 180.25569 * 20 19 18 38 38 H 1.07993 * 120.01038 * 179.97438 * 23 21 20 39 39 H 1.07997 * 119.98486 * 180.02562 * 24 23 21 40 40 H 1.09001 * 117.49928 * 0.02562 * 25 16 14 41 41 H 1.08997 * 117.50078 * 145.01838 * 25 16 14 42 42 H 1.09007 * 117.50116 * 214.97559 * 26 16 14 43 43 H 1.09002 * 117.50267 * 359.97438 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3374 2.1732 9 14 6.0049 0.8814 1.3818 10 1 6.5986 1.5465 0.1943 11 1 6.3990 1.6168 2.6102 12 1 6.4970 -0.5173 1.4628 13 7 1.6523 2.0976 -1.2517 14 6 0.4350 2.6644 -1.3669 15 8 -0.3690 2.5628 -0.4646 16 6 0.0730 3.4246 -2.6167 17 6 0.8702 4.7069 -2.8634 18 6 0.7684 5.6020 -1.6554 19 6 -0.2954 6.4761 -1.5312 20 6 -0.3923 7.2940 -0.4214 21 6 0.5820 7.2453 0.5611 22 9 0.4908 8.0478 1.6441 23 6 1.6499 6.3732 0.4330 24 6 1.7417 5.5522 -0.6748 25 6 -1.3935 3.4096 -3.0529 26 6 -0.3522 2.6106 -3.8404 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 3.8293 -0.0604 2.9502 33 1 2.2718 2.1232 -1.9978 34 1 1.9157 4.4559 -3.0426 35 1 0.4665 5.2240 -3.7338 36 1 -1.0531 6.5169 -2.2996 37 1 -1.2257 7.9739 -0.3225 38 1 2.4106 6.3347 1.1986 39 1 2.5743 4.8716 -0.7747 40 1 -2.0965 2.8503 -2.4356 41 1 -1.7901 4.3131 -3.5159 42 1 -0.0642 2.9888 -4.8214 43 1 -0.3696 1.5252 -3.7417 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276080019.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:16 Heat of formation + Delta-G solvation = -62.596192 kcal Electronic energy + Delta-G solvation = -25685.579580 eV Core-core repulsion = 22030.711321 eV Total energy + Delta-G solvation = -3654.868259 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.91673 -41.25571 -39.82883 -37.91138 -36.60568 -34.22297 -33.01122 -32.63956 -32.04137 -29.05112 -27.83143 -25.39105 -24.13318 -23.95317 -23.21537 -22.55557 -21.45402 -20.46233 -18.74539 -18.45536 -17.54784 -17.32068 -17.12377 -16.63830 -16.35221 -16.32821 -16.16046 -15.24841 -15.20085 -14.93394 -14.60398 -14.53344 -14.36212 -13.88101 -13.61313 -13.38079 -13.18797 -13.16056 -12.88720 -12.86847 -12.73153 -12.68415 -12.32698 -12.15122 -12.04636 -11.90874 -11.59895 -11.37895 -11.03943 -10.84839 -10.56168 -10.36322 -10.02971 -9.54487 -9.47694 -8.15488 -6.32039 0.16825 0.31259 1.42107 1.44002 1.54833 1.93407 2.36244 2.56975 2.69598 2.93185 3.14619 3.30844 3.70593 3.80728 3.90188 3.96515 4.03978 4.07213 4.33891 4.37658 4.42113 4.48843 4.57637 4.76379 4.81282 4.83998 4.87423 4.98912 5.03237 5.05502 5.11879 5.18185 5.19273 5.27700 5.31522 5.33660 5.45598 5.57944 5.61266 5.68687 5.81657 5.97545 5.97706 6.19433 6.77868 7.11061 7.36129 7.71137 8.90036 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.011214 B = 0.005584 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.330616 B = 5012.674949 C = 6476.416178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.122 4.122 3 C 0.285 3.715 4 H -0.009 1.009 5 C -0.539 4.539 6 H 0.073 0.927 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 0.964 3.036 10 H -0.258 1.258 11 H -0.288 1.288 12 H -0.280 1.280 13 N -0.700 5.700 14 C 0.536 3.464 15 O -0.588 6.588 16 C -0.166 4.166 17 C -0.029 4.029 18 C -0.092 4.092 19 C -0.078 4.078 20 C -0.155 4.155 21 C 0.068 3.932 22 F -0.153 7.153 23 C -0.170 4.170 24 C -0.094 4.094 25 C -0.144 4.144 26 C -0.138 4.138 27 H 0.020 0.980 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.263 0.737 33 H 0.401 0.599 34 H 0.088 0.912 35 H 0.124 0.876 36 H 0.167 0.833 37 H 0.157 0.843 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.074 0.926 41 H 0.134 0.866 42 H 0.140 0.860 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.763 10.633 -15.211 19.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.161 4.161 3 C 0.181 3.819 4 H 0.009 0.991 5 C -0.577 4.577 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.556 5.556 9 Si 0.789 3.211 10 H -0.181 1.181 11 H -0.214 1.214 12 H -0.206 1.206 13 N -0.348 5.348 14 C 0.323 3.677 15 O -0.469 6.469 16 C -0.169 4.169 17 C -0.066 4.066 18 C -0.092 4.092 19 C -0.096 4.096 20 C -0.173 4.173 21 C 0.049 3.951 22 F -0.131 7.131 23 C -0.189 4.189 24 C -0.112 4.112 25 C -0.181 4.181 26 C -0.175 4.175 27 H 0.039 0.961 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.235 0.765 34 H 0.106 0.894 35 H 0.142 0.858 36 H 0.185 0.815 37 H 0.175 0.825 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.093 0.907 41 H 0.152 0.848 42 H 0.158 0.842 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.287 10.500 -14.337 18.850 hybrid contribution 1.337 -0.274 1.340 1.912 sum -4.950 10.226 -12.998 17.263 Atomic orbital electron populations 1.21678 0.97115 0.98690 1.00265 1.21796 0.93616 0.99609 1.01076 1.18244 0.93404 0.88821 0.81408 0.99087 1.21593 0.91418 1.38353 1.06379 0.90877 1.25732 1.02923 0.94586 0.95192 1.70068 1.36869 1.38698 1.09917 0.85411 0.79673 0.77765 0.78202 1.18133 1.21383 1.20619 1.46169 1.15645 1.55955 1.17047 1.20075 0.81486 0.78200 0.87924 1.90651 1.50887 1.62165 1.43219 1.21427 1.01333 0.99363 0.94806 1.20153 1.01056 0.90056 0.95301 1.20139 0.94619 0.97356 0.97095 1.21236 0.97320 0.93458 0.97555 1.21407 0.99122 1.02680 0.94114 1.17975 0.97936 0.93371 0.85793 1.91442 1.96320 1.71858 1.53514 1.21255 0.99117 0.98140 1.00381 1.21099 0.99803 0.97048 0.93227 1.23075 0.89642 1.03644 1.01719 1.23207 1.00998 0.98179 0.95109 0.96068 0.93426 0.94040 0.91369 0.94083 0.92807 0.76479 0.89394 0.85803 0.81507 0.82545 0.85701 0.85947 0.90706 0.84794 0.84176 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.47 71.98 0.61 -4.92 16 2 C -0.12 -6.04 5.45 30.60 0.17 -5.87 16 3 C 0.28 14.36 2.24 44.25 0.10 14.46 16 4 H -0.01 -0.54 7.65 -2.39 -0.02 -0.55 16 5 C -0.54 -27.88 8.73 25.60 0.22 -27.65 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.83 5.29 84.65 0.45 1.28 16 8 N -0.92 -52.78 11.29 21.45 0.24 -52.54 16 9 Si 0.96 41.95 29.54 68.60 2.03 43.98 16 10 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 11 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 13 N -0.70 -27.60 5.02 -446.10 -2.24 -29.84 16 14 C 0.54 20.04 4.82 87.65 0.42 20.47 16 15 O -0.59 -27.74 13.51 -3.02 -0.04 -27.78 16 16 C -0.17 -4.07 2.01 -52.93 -0.11 -4.18 16 17 C -0.03 -0.55 5.30 29.85 0.16 -0.39 16 18 C -0.09 -2.33 4.67 -19.86 -0.09 -2.42 16 19 C -0.08 -1.71 9.71 22.26 0.22 -1.49 16 20 C -0.15 -3.81 10.03 22.31 0.22 -3.59 16 21 C 0.07 2.10 7.30 22.38 0.16 2.26 16 22 F -0.15 -4.85 17.27 44.97 0.78 -4.07 16 23 C -0.17 -5.63 10.03 22.32 0.22 -5.41 16 24 C -0.09 -2.96 9.25 22.26 0.21 -2.76 16 25 C -0.14 -2.93 9.74 30.62 0.30 -2.63 16 26 C -0.14 -2.49 9.96 30.61 0.30 -2.18 16 27 H 0.02 1.05 7.80 -2.39 -0.02 1.03 16 28 H 0.05 2.09 5.54 -2.39 -0.01 2.08 16 29 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 3.81 5.95 -2.39 -0.01 3.79 16 31 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 33 H 0.40 13.47 8.54 -92.70 -0.79 12.68 16 34 H 0.09 1.62 8.06 -2.39 -0.02 1.60 16 35 H 0.12 1.38 8.06 -2.39 -0.02 1.36 16 36 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 38 H 0.12 4.13 8.06 -2.91 -0.02 4.11 16 39 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 40 H 0.07 1.97 8.00 -2.39 -0.02 1.95 16 41 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.14 1.47 8.14 -2.38 -0.02 1.45 16 43 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -69.94 359.53 4.55 -65.39 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 0.22 Total: 29.90 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: 3.56 Total: -25.03 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -2.00 Total: -82.38 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.04 Total: -27.78 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 0.78 Total: -4.07 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -69.94 4.55 -65.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276080019.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.792 kcal (2) G-P(sol) polarization free energy of solvation -69.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds