Wall clock time and date at job start Tue Mar 31 2020 08:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46714 * 2 1 4 4 H 1.09000 * 109.47340 * 304.99853 * 3 2 1 5 5 C 1.50699 * 109.46835 * 184.99775 * 3 2 1 6 6 H 1.08003 * 120.00410 * 245.75595 * 5 3 2 7 7 C 1.37883 * 119.99709 * 65.75909 * 5 3 2 8 8 N 1.31516 * 120.00139 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99725 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46810 * 90.00079 * 9 7 5 11 11 H 1.48496 * 109.47048 * 209.99875 * 9 7 5 12 12 H 1.48494 * 109.47419 * 329.99992 * 9 7 5 13 13 N 1.46505 * 109.46998 * 65.00245 * 3 2 1 14 14 C 1.34770 * 119.99747 * 260.83492 * 13 3 2 15 15 O 1.21285 * 120.00598 * 6.36380 * 14 13 3 16 16 C 1.50706 * 119.99991 * 186.37010 * 14 13 3 17 17 C 1.53001 * 115.54800 * 296.18071 * 16 14 13 18 18 C 1.50693 * 109.46830 * 293.59363 * 17 16 14 19 19 C 1.38248 * 119.97328 * 277.08371 * 18 17 16 20 20 C 1.38198 * 120.02378 * 179.76836 * 19 18 17 21 21 C 1.38458 * 119.97504 * 0.51355 * 20 19 18 22 22 F 1.35107 * 120.02626 * 179.76593 * 21 20 19 23 23 C 1.38459 * 119.94756 * 359.74215 * 21 20 19 24 24 C 1.38197 * 119.97337 * 0.02562 * 23 21 20 25 25 C 1.53002 * 117.50016 * 150.50756 * 16 14 13 26 26 C 1.53008 * 117.49804 * 81.85087 * 16 14 13 27 27 H 1.08995 * 109.47168 * 59.99744 * 1 2 3 28 28 H 1.09002 * 109.46911 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46795 * 299.99751 * 1 2 3 30 30 H 1.08998 * 109.47213 * 240.00586 * 2 1 3 31 31 H 1.08997 * 109.46924 * 119.99788 * 2 1 3 32 32 H 0.96994 * 119.99928 * 180.02562 * 8 7 5 33 33 H 0.96998 * 119.99989 * 80.83110 * 13 3 2 34 34 H 1.08996 * 109.47102 * 53.59321 * 17 16 14 35 35 H 1.09001 * 109.46609 * 173.59440 * 17 16 14 36 36 H 1.07999 * 119.98889 * 0.03021 * 19 18 17 37 37 H 1.08005 * 120.01523 * 180.25393 * 20 19 18 38 38 H 1.08003 * 120.01196 * 179.97438 * 23 21 20 39 39 H 1.08001 * 119.98556 * 180.02562 * 24 23 21 40 40 H 1.09005 * 117.49637 * 0.02562 * 25 16 14 41 41 H 1.08998 * 117.49757 * 145.01765 * 25 16 14 42 42 H 1.09000 * 117.49303 * 214.98076 * 26 16 14 43 43 H 1.08996 * 117.49888 * 359.97105 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1506 1.8042 0.6926 7 6 4.1389 0.9868 -1.2793 8 7 3.3977 0.5483 -2.2733 9 14 6.0006 0.9897 -1.4330 10 1 6.5401 -0.3022 -0.9380 11 1 6.3793 1.1710 -2.8574 12 1 6.5622 2.1025 -0.6260 13 7 1.6524 2.0975 1.2519 14 6 0.5726 2.9033 1.2846 15 8 -0.1445 2.9963 0.3108 16 6 0.2562 3.6891 2.5310 17 6 -0.0820 2.8553 3.7685 18 6 -1.3797 2.1237 3.5419 19 6 -2.5832 2.7683 3.7597 20 6 -3.7740 2.0998 3.5476 21 6 -3.7614 0.7807 3.1270 22 9 -4.9249 0.1247 2.9239 23 6 -2.5554 0.1345 2.9143 24 6 -1.3659 0.8065 3.1224 25 6 -0.4700 5.0247 2.3589 26 6 1.0101 5.0026 2.7485 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8177 0.2260 -3.0860 33 1 2.1729 1.9511 2.0572 34 1 0.7149 2.1341 3.9496 35 1 -0.1812 3.5120 4.6329 36 1 -2.5928 3.7959 4.0917 37 1 -4.7141 2.6047 3.7139 38 1 -2.5444 -0.8945 2.5866 39 1 -0.4251 0.3028 2.9562 40 1 -0.7194 5.3349 1.3441 41 1 -1.1885 5.3096 3.1275 42 1 1.2648 5.2730 3.7733 43 1 1.7352 5.2982 1.9903 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276080021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:19 Heat of formation + Delta-G solvation = -67.103080 kcal Electronic energy + Delta-G solvation = -25602.926364 eV Core-core repulsion = 21947.862671 eV Total energy + Delta-G solvation = -3655.063693 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.88222 -41.23927 -39.80398 -37.91678 -36.67719 -34.24721 -32.92055 -32.71953 -32.04588 -29.06995 -27.85659 -25.46020 -24.02897 -23.95094 -23.23317 -22.55069 -21.54323 -20.46381 -18.73249 -18.48139 -17.59760 -17.26247 -17.11405 -16.60616 -16.41865 -16.22899 -16.13871 -15.41896 -14.97014 -14.93840 -14.64410 -14.44309 -14.31940 -14.14985 -13.68976 -13.42385 -13.21069 -13.08624 -12.89965 -12.88080 -12.72648 -12.62230 -12.34469 -12.14754 -12.02041 -11.88256 -11.62461 -11.39396 -11.12415 -10.89801 -10.59363 -10.40116 -9.99153 -9.59026 -9.45758 -8.15729 -6.31714 0.18745 0.32816 1.43610 1.44546 1.54582 1.89195 2.36779 2.57027 2.67319 2.93159 3.15048 3.33138 3.72010 3.81465 3.87702 3.97518 4.02791 4.06255 4.29550 4.37804 4.42065 4.45318 4.56017 4.73837 4.81013 4.81754 4.86008 4.97890 5.02688 5.05017 5.09762 5.19873 5.20376 5.26258 5.31320 5.31949 5.41411 5.56552 5.62330 5.66674 5.76108 5.98669 6.02544 6.14702 6.79473 7.06537 7.36368 7.68387 8.90824 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.004344 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.006898 B = 6444.272419 C = 7499.439639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 C 0.278 3.722 4 H 0.000 1.000 5 C -0.545 4.545 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 0.966 3.034 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.264 1.264 13 N -0.699 5.699 14 C 0.537 3.463 15 O -0.596 6.596 16 C -0.163 4.163 17 C -0.031 4.031 18 C -0.091 4.091 19 C -0.080 4.080 20 C -0.155 4.155 21 C 0.068 3.932 22 F -0.152 7.152 23 C -0.163 4.163 24 C -0.095 4.095 25 C -0.145 4.145 26 C -0.139 4.139 27 H 0.015 0.985 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.263 0.737 33 H 0.402 0.598 34 H 0.087 0.913 35 H 0.124 0.876 36 H 0.164 0.836 37 H 0.154 0.846 38 H 0.133 0.867 39 H 0.127 0.873 40 H 0.071 0.929 41 H 0.136 0.864 42 H 0.143 0.857 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.181 5.586 17.914 20.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.152 4.152 3 C 0.174 3.826 4 H 0.018 0.982 5 C -0.583 4.583 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.557 5.557 9 Si 0.791 3.209 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.188 1.188 13 N -0.347 5.347 14 C 0.324 3.676 15 O -0.478 6.478 16 C -0.166 4.166 17 C -0.068 4.068 18 C -0.092 4.092 19 C -0.098 4.098 20 C -0.174 4.174 21 C 0.049 3.951 22 F -0.131 7.131 23 C -0.182 4.182 24 C -0.113 4.113 25 C -0.182 4.182 26 C -0.176 4.176 27 H 0.034 0.966 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.236 0.764 34 H 0.106 0.894 35 H 0.142 0.858 36 H 0.181 0.819 37 H 0.172 0.828 38 H 0.151 0.849 39 H 0.145 0.855 40 H 0.090 0.910 41 H 0.154 0.846 42 H 0.161 0.839 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.686 5.547 17.011 19.890 hybrid contribution 0.809 -0.764 -1.008 1.501 sum -7.877 4.783 16.004 18.468 Atomic orbital electron populations 1.21728 0.97140 0.99550 1.00522 1.21679 0.93647 0.99087 1.00768 1.18338 0.93313 0.89174 0.81790 0.98163 1.21641 0.91741 1.43080 1.01836 0.91145 1.25768 1.03050 0.94566 0.95132 1.70096 1.37065 1.42648 1.05918 0.85437 0.79529 0.78881 0.77055 1.19620 1.21563 1.18821 1.46101 1.28167 1.46906 1.13523 1.20139 0.79971 0.79059 0.88467 1.90642 1.50610 1.67349 1.39170 1.21424 1.09953 0.90535 0.94689 1.20163 0.93549 0.98386 0.94683 1.20100 0.96425 0.93682 0.98952 1.21210 0.90063 1.00801 0.97679 1.21399 1.01172 0.92566 1.02227 1.17982 0.81060 0.92391 1.03646 1.91453 1.47175 1.81417 1.93075 1.21245 0.91689 1.01720 1.03552 1.21083 0.97575 0.95108 0.97528 1.23049 0.96078 0.95951 1.03096 1.23214 0.94608 0.95165 1.04643 0.96610 0.93332 0.92189 0.92563 0.93181 0.92798 0.76392 0.89416 0.85811 0.81898 0.82812 0.84872 0.85468 0.91017 0.84647 0.83909 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.80 8.96 71.98 0.65 -5.15 16 2 C -0.11 -5.39 5.49 30.60 0.17 -5.22 16 3 C 0.28 14.01 2.09 44.25 0.09 14.10 16 4 H 0.00 0.02 7.26 -2.39 -0.02 0.01 16 5 C -0.54 -28.58 8.72 25.60 0.22 -28.36 16 6 H 0.07 3.46 7.81 -2.91 -0.02 3.44 16 7 C 0.01 0.79 5.30 84.66 0.45 1.24 16 8 N -0.92 -53.34 11.74 21.45 0.25 -53.09 16 9 Si 0.97 42.15 29.54 68.60 2.03 44.18 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 13 N -0.70 -27.68 4.68 -446.08 -2.09 -29.76 16 14 C 0.54 20.51 5.70 87.66 0.50 21.01 16 15 O -0.60 -29.09 15.17 -3.04 -0.05 -29.14 16 16 C -0.16 -4.08 1.88 -52.92 -0.10 -4.18 16 17 C -0.03 -0.56 5.22 29.85 0.16 -0.40 16 18 C -0.09 -2.03 4.86 -19.86 -0.10 -2.13 16 19 C -0.08 -1.53 9.69 22.26 0.22 -1.32 16 20 C -0.16 -3.33 10.03 22.31 0.22 -3.10 16 21 C 0.07 1.80 7.30 22.38 0.16 1.96 16 22 F -0.15 -4.21 17.27 44.97 0.78 -3.44 16 23 C -0.16 -4.42 10.03 22.31 0.22 -4.19 16 24 C -0.09 -2.49 8.16 22.26 0.18 -2.31 16 25 C -0.14 -3.16 9.74 30.62 0.30 -2.86 16 26 C -0.14 -2.79 9.92 30.62 0.30 -2.48 16 27 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.06 2.43 4.32 -2.39 -0.01 2.42 16 30 H 0.06 3.06 6.44 -2.39 -0.02 3.04 16 31 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 33 H 0.40 13.30 8.73 -92.71 -0.81 12.49 16 34 H 0.09 1.51 8.02 -2.39 -0.02 1.49 16 35 H 0.12 1.29 8.07 -2.39 -0.02 1.27 16 36 H 0.16 1.95 7.60 -2.91 -0.02 1.93 16 37 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 38 H 0.13 3.40 8.06 -2.91 -0.02 3.37 16 39 H 0.13 3.39 7.42 -2.91 -0.02 3.36 16 40 H 0.07 2.04 7.97 -2.38 -0.02 2.02 16 41 H 0.14 1.88 7.68 -2.39 -0.02 1.86 16 42 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -71.12 359.26 4.78 -66.34 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: 0.21 Total: 28.30 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 3.65 Total: -23.39 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -1.83 Total: -82.85 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.05 Total: -29.14 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.78 Total: -3.44 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -71.12 4.78 -66.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276080021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.762 kcal (2) G-P(sol) polarization free energy of solvation -71.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds