Wall clock time and date at job start Tue Mar 31 2020 09:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46824 * 2 1 4 4 C 1.53000 * 109.47135 * 239.99889 * 2 1 3 5 5 C 1.50699 * 109.46806 * 174.99903 * 4 2 1 6 6 H 1.08002 * 120.00308 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00161 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99777 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00353 * 180.02562 * 7 5 4 10 10 H 1.48486 * 109.47075 * 60.00302 * 9 7 5 11 11 H 1.48502 * 109.47070 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47039 * 300.00266 * 9 7 5 13 13 N 1.46900 * 109.46887 * 119.99910 * 2 1 3 14 14 C 1.47443 * 111.00227 * 55.12422 * 13 2 1 15 15 C 1.54312 * 107.23612 * 236.74273 * 14 13 2 16 16 C 1.55142 * 103.17714 * 337.62814 * 15 14 13 17 17 H 1.08996 * 110.99420 * 277.65160 * 16 15 14 18 18 C 1.53001 * 110.99002 * 153.82761 * 16 15 14 19 19 S 1.81400 * 109.46509 * 66.45971 * 18 16 15 20 20 C 1.76212 * 102.99834 * 179.97438 * 19 18 16 21 21 C 1.38973 * 120.07647 * 359.72406 * 20 19 18 22 22 C 1.38080 * 119.91181 * 179.76538 * 21 20 19 23 23 C 1.38299 * 120.08601 * 0.48789 * 22 21 20 24 24 C 1.38305 * 120.15914 * 359.76533 * 23 22 21 25 25 C 1.38077 * 120.07744 * 359.97438 * 24 23 22 26 26 C 1.47844 * 110.99982 * 294.28266 * 13 2 1 27 27 H 1.08998 * 109.46824 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47272 * 300.00213 * 1 2 3 29 29 H 1.09005 * 109.46370 * 60.00399 * 1 2 3 30 30 H 1.08993 * 109.46991 * 294.99556 * 4 2 1 31 31 H 1.09005 * 109.47209 * 55.00291 * 4 2 1 32 32 H 0.96999 * 120.00137 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.88254 * 117.33308 * 14 13 2 34 34 H 1.09003 * 109.88840 * 356.15438 * 14 13 2 35 35 H 1.09002 * 110.70596 * 96.10119 * 15 14 13 36 36 H 1.09005 * 110.70742 * 219.16269 * 15 14 13 37 37 H 1.08998 * 109.47295 * 186.45297 * 18 16 15 38 38 H 1.08993 * 109.47685 * 306.46005 * 18 16 15 39 39 H 1.08001 * 120.03981 * 359.97438 * 21 20 19 40 40 H 1.08004 * 119.95608 * 180.23273 * 22 21 20 41 41 H 1.08001 * 119.92312 * 179.74229 * 23 22 21 42 42 H 1.08001 * 119.96047 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.03865 * 179.97438 * 25 24 23 44 44 H 1.08999 * 110.37744 * 265.19940 * 26 13 2 45 45 H 1.09007 * 110.37325 * 27.42750 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.6149 -1.3126 6 1 4.0791 -0.0861 -0.5391 7 6 4.2306 -1.1935 -2.3576 8 7 3.5766 -1.8378 -3.2994 9 14 6.0923 -1.0622 -2.4359 10 1 6.6839 -1.6881 -1.2263 11 1 6.5874 -1.7622 -3.6485 12 1 6.4856 0.3686 -2.4956 13 7 2.0197 -0.6925 1.1995 14 6 1.4537 -2.0507 1.2935 15 6 0.7326 -2.1524 2.6540 16 6 1.4126 -1.0427 3.4985 17 1 2.3530 -1.3953 3.9219 18 6 0.4747 -0.5375 4.5966 19 16 0.1831 -1.8634 5.7998 20 6 -0.8988 -1.1080 6.9677 21 6 -1.2939 0.2135 6.7977 22 6 -2.1457 0.8006 7.7123 23 6 -2.5975 0.0784 8.8018 24 6 -2.2021 -1.2353 8.9770 25 6 -1.3549 -1.8307 8.0636 26 6 1.6611 0.0528 2.4249 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 1.7518 -1.7715 -1.2055 31 1 1.6055 -0.2617 -2.1370 32 1 4.0611 -2.2452 -4.0344 33 1 2.2531 -2.7898 1.2413 34 1 0.7424 -2.2129 0.4837 35 1 -0.3330 -1.9525 2.5412 36 1 0.8941 -3.1322 3.1035 37 1 0.9301 0.3156 5.0995 38 1 -0.4737 -0.2341 4.1534 39 1 -0.9379 0.7794 5.9495 40 1 -2.4562 1.8263 7.5789 41 1 -3.2603 0.5415 9.5178 42 1 -2.5566 -1.7962 9.8292 43 1 -1.0462 -2.8564 8.2012 44 1 2.4826 0.7016 2.7286 45 1 0.7563 0.6384 2.2619 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276304785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:22:29 Heat of formation + Delta-G solvation = 21.446685 kcal Electronic energy + Delta-G solvation = -22144.557159 eV Core-core repulsion = 19059.546448 eV Total energy + Delta-G solvation = -3085.010711 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.20521 -39.18044 -34.80779 -32.45812 -31.50479 -31.23865 -30.24718 -28.87273 -27.29296 -25.76248 -23.23554 -22.97883 -22.69545 -21.69407 -20.24952 -18.56367 -17.97225 -16.64459 -16.23071 -15.99061 -15.46227 -15.24782 -14.80988 -14.45277 -14.28728 -13.89701 -13.76060 -13.49108 -13.29070 -12.96074 -12.93615 -12.35079 -11.94418 -11.85311 -11.73124 -11.50845 -11.36213 -11.29702 -10.97178 -10.85042 -10.78189 -10.60919 -10.42712 -10.30328 -10.18837 -10.01826 -9.89336 -9.30910 -9.15095 -9.00350 -8.24072 -7.60492 -7.47080 -5.87145 -3.85067 0.91067 1.04740 1.29616 2.23813 3.40316 3.42272 3.45809 3.49694 4.38737 4.53005 4.57536 4.58626 4.61430 4.77347 4.79464 5.02151 5.07054 5.16850 5.21304 5.33035 5.42055 5.46793 5.50121 5.56897 5.65618 5.78668 5.85272 5.87643 5.96335 5.97573 6.01829 6.05249 6.06948 6.17720 6.26788 6.38905 6.49827 6.58013 6.65809 6.70057 6.98859 7.52843 7.66363 7.84730 8.01721 8.13730 8.59539 9.20556 9.76547 11.24803 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.032939 B = 0.002538 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.852289 B =11030.025050 C =11266.879389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.080 3.920 3 H 0.069 0.931 4 C 0.031 3.969 5 C -0.491 4.491 6 H 0.060 0.940 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.499 5.499 14 C 0.046 3.954 15 C -0.135 4.135 16 C -0.083 4.083 17 H 0.092 0.908 18 C -0.093 4.093 19 S -0.109 6.109 20 C -0.082 4.082 21 C -0.136 4.136 22 C -0.100 4.100 23 C -0.131 4.131 24 C -0.102 4.102 25 C -0.104 4.104 26 C 0.049 3.951 27 H 0.054 0.946 28 H 0.040 0.960 29 H 0.056 0.944 30 H 0.019 0.981 31 H 0.018 0.982 32 H 0.258 0.742 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.075 0.925 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.591 2.788 22.838 26.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.028 4.028 3 H 0.087 0.913 4 C -0.006 4.006 5 C -0.529 4.529 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.719 3.281 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.222 5.222 14 C -0.082 4.082 15 C -0.174 4.174 16 C -0.104 4.104 17 H 0.111 0.889 18 C -0.241 4.241 19 S 0.137 5.863 20 C -0.195 4.195 21 C -0.160 4.160 22 C -0.120 4.120 23 C -0.152 4.152 24 C -0.122 4.122 25 C -0.128 4.128 26 C -0.081 4.081 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.093 0.907 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.473 1.520 22.482 25.286 hybrid contribution -0.439 1.399 -0.015 1.467 sum -11.911 2.919 22.468 25.597 Atomic orbital electron populations 1.22568 0.99812 1.01385 1.00627 1.22058 0.89964 0.98526 0.92256 0.91262 1.19181 0.96401 0.95331 0.89732 1.21131 0.91792 1.33053 1.06968 0.92214 1.25012 0.98044 0.95876 0.95999 1.69956 1.35309 1.36877 1.12371 0.86683 0.86347 0.77982 0.77082 1.20354 1.21674 1.20516 1.63764 1.56526 1.01231 1.00699 1.22786 0.97893 0.92431 0.95091 1.22916 0.99368 0.98622 0.96484 1.22171 0.98002 0.96960 0.93223 0.88920 1.23702 1.03473 0.99091 0.97881 1.85667 1.56331 1.21462 1.22879 1.21924 1.01365 0.96995 0.99182 1.21232 1.00102 0.93953 1.00673 1.21078 0.96805 0.99841 0.94289 1.21173 1.00929 0.94777 0.98278 1.21095 0.97174 0.95210 0.98734 1.20787 0.98531 0.99856 0.93607 1.23185 0.99477 0.95532 0.89914 0.92695 0.94103 0.92519 0.96306 0.96394 0.93279 0.90689 0.91837 0.91782 0.90923 0.89308 0.89489 0.85802 0.85785 0.85917 0.85614 0.85531 0.90704 0.93713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.11 8.63 37.16 0.32 -2.79 16 2 C 0.08 1.61 2.23 -67.71 -0.15 1.46 16 3 H 0.07 1.43 8.13 -51.93 -0.42 1.00 16 4 C 0.03 0.78 4.35 -27.88 -0.12 0.66 16 5 C -0.49 -13.81 8.84 -34.44 -0.30 -14.12 16 6 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 9 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.50 -9.31 4.88 -222.98 -1.09 -10.39 16 14 C 0.05 0.79 5.52 -2.84 -0.02 0.78 16 15 C -0.14 -1.83 5.92 -24.91 -0.15 -1.98 16 16 C -0.08 -1.04 3.08 -88.22 -0.27 -1.32 16 17 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 18 C -0.09 -0.97 3.85 37.16 0.14 -0.83 16 19 S -0.11 -1.21 21.48 -107.50 -2.31 -3.52 16 20 C -0.08 -0.87 6.11 -39.04 -0.24 -1.10 16 21 C -0.14 -1.31 9.36 -39.37 -0.37 -1.68 16 22 C -0.10 -0.84 10.04 -39.62 -0.40 -1.23 16 23 C -0.13 -1.01 10.04 -39.53 -0.40 -1.40 16 24 C -0.10 -0.82 10.04 -39.62 -0.40 -1.21 16 25 C -0.10 -0.99 9.79 -39.37 -0.39 -1.37 16 26 C 0.05 0.71 5.98 -2.04 -0.01 0.70 16 27 H 0.05 0.92 6.06 -51.93 -0.31 0.60 16 28 H 0.04 0.60 6.28 -51.93 -0.33 0.27 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.02 0.51 6.69 -51.93 -0.35 0.16 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.06 1.16 4.79 -51.93 -0.25 0.91 16 35 H 0.06 0.83 8.01 -51.93 -0.42 0.42 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 0.84 7.73 -51.92 -0.40 0.44 16 38 H 0.09 0.88 7.73 -51.93 -0.40 0.48 16 39 H 0.12 1.09 5.88 -52.49 -0.31 0.78 16 40 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 41 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.04 0.61 5.81 -51.93 -0.30 0.31 16 LS Contribution 364.01 15.07 5.49 5.49 Total: -1.00 -30.61 364.01 -12.30 -42.91 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -7.26 Total: -0.92 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: -2.84 Total: -24.10 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: -0.35 Total: -37.04 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Atomic # 16 Polarization: -1.21 SS G_CDS: -2.31 Total: -3.52 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.61 -12.30 -42.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276304785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.354 kcal (2) G-P(sol) polarization free energy of solvation -30.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds