Wall clock time and date at job start Tue Mar 31 2020 09:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46824 * 2 1 4 4 C 1.53000 * 109.47135 * 239.99889 * 2 1 3 5 5 C 1.50699 * 109.46806 * 174.99903 * 4 2 1 6 6 H 1.08002 * 120.00308 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00161 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99777 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00353 * 180.02562 * 7 5 4 10 10 H 1.48486 * 109.47075 * 60.00302 * 9 7 5 11 11 H 1.48502 * 109.47070 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47039 * 300.00266 * 9 7 5 13 13 N 1.46900 * 109.46887 * 119.99910 * 2 1 3 14 14 C 1.47443 * 111.00227 * 55.12422 * 13 2 1 15 15 C 1.54312 * 107.23612 * 236.74273 * 14 13 2 16 16 C 1.55142 * 103.17714 * 337.62814 * 15 14 13 17 17 H 1.08996 * 110.99420 * 277.65160 * 16 15 14 18 18 C 1.53001 * 110.99002 * 153.82761 * 16 15 14 19 19 S 1.81400 * 109.46509 * 66.45971 * 18 16 15 20 20 C 1.76212 * 102.99834 * 179.97438 * 19 18 16 21 21 C 1.38973 * 120.07647 * 359.72406 * 20 19 18 22 22 C 1.38080 * 119.91181 * 179.76538 * 21 20 19 23 23 C 1.38299 * 120.08601 * 0.48789 * 22 21 20 24 24 C 1.38305 * 120.15914 * 359.76533 * 23 22 21 25 25 C 1.38077 * 120.07744 * 359.97438 * 24 23 22 26 26 C 1.47844 * 110.99982 * 294.28266 * 13 2 1 27 27 H 1.08998 * 109.46824 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47272 * 300.00213 * 1 2 3 29 29 H 1.09005 * 109.46370 * 60.00399 * 1 2 3 30 30 H 1.08993 * 109.46991 * 294.99556 * 4 2 1 31 31 H 1.09005 * 109.47209 * 55.00291 * 4 2 1 32 32 H 0.96999 * 120.00137 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.88254 * 117.33308 * 14 13 2 34 34 H 1.09003 * 109.88840 * 356.15438 * 14 13 2 35 35 H 1.09002 * 110.70596 * 96.10119 * 15 14 13 36 36 H 1.09005 * 110.70742 * 219.16269 * 15 14 13 37 37 H 1.08998 * 109.47295 * 186.45297 * 18 16 15 38 38 H 1.08993 * 109.47685 * 306.46005 * 18 16 15 39 39 H 1.08001 * 120.03981 * 359.97438 * 21 20 19 40 40 H 1.08004 * 119.95608 * 180.23273 * 22 21 20 41 41 H 1.08001 * 119.92312 * 179.74229 * 23 22 21 42 42 H 1.08001 * 119.96047 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.03865 * 179.97438 * 25 24 23 44 44 H 1.08999 * 110.37744 * 265.19940 * 26 13 2 45 45 H 1.09007 * 110.37325 * 27.42750 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.6149 -1.3126 6 1 4.0791 -0.0861 -0.5391 7 6 4.2306 -1.1935 -2.3576 8 7 3.5766 -1.8378 -3.2994 9 14 6.0923 -1.0622 -2.4359 10 1 6.6839 -1.6881 -1.2263 11 1 6.5874 -1.7622 -3.6485 12 1 6.4856 0.3686 -2.4956 13 7 2.0197 -0.6925 1.1995 14 6 1.4537 -2.0507 1.2935 15 6 0.7326 -2.1524 2.6540 16 6 1.4126 -1.0427 3.4985 17 1 2.3530 -1.3953 3.9219 18 6 0.4747 -0.5375 4.5966 19 16 0.1831 -1.8634 5.7998 20 6 -0.8988 -1.1080 6.9677 21 6 -1.2939 0.2135 6.7977 22 6 -2.1457 0.8006 7.7123 23 6 -2.5975 0.0784 8.8018 24 6 -2.2021 -1.2353 8.9770 25 6 -1.3549 -1.8307 8.0636 26 6 1.6611 0.0528 2.4249 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 1.7518 -1.7715 -1.2055 31 1 1.6055 -0.2617 -2.1370 32 1 4.0611 -2.2452 -4.0344 33 1 2.2531 -2.7898 1.2413 34 1 0.7424 -2.2129 0.4837 35 1 -0.3330 -1.9525 2.5412 36 1 0.8941 -3.1322 3.1035 37 1 0.9301 0.3156 5.0995 38 1 -0.4737 -0.2341 4.1534 39 1 -0.9379 0.7794 5.9495 40 1 -2.4562 1.8263 7.5789 41 1 -3.2603 0.5415 9.5178 42 1 -2.5566 -1.7962 9.8292 43 1 -1.0462 -2.8564 8.2012 44 1 2.4826 0.7016 2.7286 45 1 0.7563 0.6384 2.2619 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276304785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:22:28 Heat of formation + Delta-G solvation = 5.872051 kcal Electronic energy + Delta-G solvation = -22145.232526 eV Core-core repulsion = 19059.546448 eV Total energy + Delta-G solvation = -3085.686077 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.54243 -39.79934 -36.30401 -34.43734 -32.30238 -31.86569 -31.44725 -30.25907 -29.10150 -26.90016 -25.04069 -23.67091 -23.41583 -23.19162 -21.31162 -20.10328 -18.69400 -18.36013 -17.52923 -17.07283 -16.72934 -16.47193 -15.93981 -15.53737 -15.30414 -15.03098 -14.71513 -14.49183 -14.38114 -14.24385 -13.87532 -13.82978 -13.61009 -13.24546 -13.09699 -12.71456 -12.66170 -12.53634 -12.48305 -12.28891 -12.10879 -12.02722 -11.78894 -11.67072 -11.49390 -11.14386 -11.05716 -10.96910 -10.68350 -10.47621 -9.93624 -8.90585 -8.37656 -8.10035 -6.15133 0.26612 0.42033 0.50723 1.41388 1.44406 1.46212 1.51786 2.47284 2.77902 3.13857 3.26387 3.57595 3.74762 3.80235 3.93231 4.02432 4.14556 4.24273 4.27448 4.32886 4.36863 4.45159 4.51211 4.55422 4.57668 4.60812 4.70552 4.76014 4.81001 4.93718 4.98738 5.07113 5.08587 5.12037 5.23214 5.31432 5.32616 5.36566 5.46238 5.47875 5.57350 5.71298 5.89974 5.99492 6.31515 6.36583 6.53885 6.98688 7.50661 9.01699 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.032939 B = 0.002538 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.852289 B =11030.025050 C =11266.879389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.090 3.910 3 H 0.065 0.935 4 C 0.036 3.964 5 C -0.501 4.501 6 H 0.057 0.943 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.957 3.043 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.269 1.269 13 N -0.526 5.526 14 C 0.047 3.953 15 C -0.122 4.122 16 C -0.071 4.071 17 H 0.086 0.914 18 C -0.080 4.080 19 S -0.136 6.136 20 C -0.099 4.099 21 C -0.148 4.148 22 C -0.107 4.107 23 C -0.131 4.131 24 C -0.106 4.106 25 C -0.120 4.120 26 C 0.051 3.949 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.056 0.944 30 H -0.006 1.006 31 H -0.009 1.009 32 H 0.259 0.741 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.130 0.870 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.129 0.871 44 H 0.078 0.922 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.373 4.107 25.305 28.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.019 4.019 3 H 0.083 0.917 4 C -0.001 4.001 5 C -0.540 4.540 6 H 0.075 0.925 7 C -0.203 4.203 8 N -0.582 5.582 9 Si 0.783 3.217 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.194 1.194 13 N -0.250 5.250 14 C -0.081 4.081 15 C -0.160 4.160 16 C -0.091 4.091 17 H 0.104 0.896 18 C -0.229 4.229 19 S 0.109 5.891 20 C -0.211 4.211 21 C -0.172 4.172 22 C -0.127 4.127 23 C -0.152 4.152 24 C -0.125 4.125 25 C -0.143 4.143 26 C -0.079 4.079 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.012 0.988 31 H 0.010 0.990 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.148 0.852 40 H 0.163 0.837 41 H 0.166 0.834 42 H 0.167 0.833 43 H 0.147 0.853 44 H 0.096 0.904 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.262 2.854 24.972 27.966 hybrid contribution -0.239 0.987 -0.722 1.247 sum -12.501 3.841 24.250 27.551 Atomic orbital electron populations 1.22428 0.97059 1.01737 1.02088 1.21717 0.92120 0.97271 0.90746 0.91715 1.19040 0.95216 0.94238 0.91597 1.21470 0.93335 1.32498 1.06661 0.92465 1.25879 1.02982 0.95653 0.95753 1.70089 1.37163 1.37925 1.13049 0.85618 0.80504 0.78425 0.77146 1.19823 1.21298 1.19379 1.63581 1.57682 1.02020 1.01687 1.22679 0.96993 0.91438 0.97014 1.22795 0.99525 0.99509 0.94213 1.22007 0.98203 0.95715 0.93197 0.89598 1.23560 1.03292 0.99047 0.96969 1.85703 1.57262 1.22310 1.23859 1.21981 1.02027 0.97656 0.99486 1.21423 1.00627 0.93752 1.01409 1.21409 0.96279 1.00928 0.94074 1.21559 1.00590 0.94633 0.98387 1.21425 0.96444 0.95674 0.98974 1.20998 0.99163 1.00245 0.93919 1.23213 1.00304 0.95802 0.88534 0.92909 0.91095 0.92530 0.98780 0.99048 0.93279 0.93296 0.93262 0.90595 0.90357 0.87993 0.88612 0.85198 0.83732 0.83367 0.83308 0.85299 0.90366 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.68 8.63 71.98 0.62 -5.06 16 2 C 0.09 3.64 2.23 44.92 0.10 3.74 16 3 H 0.06 2.65 8.13 -2.39 -0.02 2.63 16 4 C 0.04 1.91 4.35 29.85 0.13 2.04 16 5 C -0.50 -28.87 8.84 25.60 0.23 -28.64 16 6 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 7 C -0.01 -0.40 5.46 84.65 0.46 0.07 16 8 N -0.94 -58.43 13.29 21.45 0.28 -58.15 16 9 Si 0.96 46.08 29.54 68.60 2.03 48.11 16 10 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 12 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 13 N -0.53 -19.57 4.88 -859.37 -4.19 -23.76 16 14 C 0.05 1.65 5.52 86.64 0.48 2.12 16 15 C -0.12 -3.18 5.92 31.77 0.19 -2.99 16 16 C -0.07 -1.67 3.08 -9.24 -0.03 -1.70 16 17 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 18 C -0.08 -1.49 3.85 71.98 0.28 -1.22 16 19 S -0.14 -2.86 21.48 -56.49 -1.21 -4.07 16 20 C -0.10 -1.95 6.11 22.62 0.14 -1.81 16 21 C -0.15 -2.57 9.36 22.41 0.21 -2.36 16 22 C -0.11 -1.50 10.04 22.25 0.22 -1.28 16 23 C -0.13 -1.63 10.04 22.30 0.22 -1.41 16 24 C -0.11 -1.44 10.04 22.25 0.22 -1.21 16 25 C -0.12 -2.11 9.79 22.41 0.22 -1.89 16 26 C 0.05 1.39 5.98 86.94 0.52 1.91 16 27 H 0.05 1.74 6.06 -2.39 -0.01 1.72 16 28 H 0.07 1.88 6.28 -2.39 -0.02 1.87 16 29 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 30 H -0.01 -0.35 6.69 -2.39 -0.02 -0.36 16 31 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 32 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 33 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.05 1.86 4.79 -2.39 -0.01 1.85 16 35 H 0.08 1.82 8.01 -2.39 -0.02 1.81 16 36 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.10 1.66 7.73 -2.39 -0.02 1.64 16 38 H 0.10 1.65 7.73 -2.39 -0.02 1.63 16 39 H 0.13 1.97 5.88 -2.91 -0.02 1.95 16 40 H 0.14 1.34 8.06 -2.91 -0.02 1.31 16 41 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 42 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 43 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 44 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.06 1.48 5.81 -2.38 -0.01 1.47 16 Total: -1.00 -67.42 364.01 2.07 -65.34 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.95 Total: 12.22 kcal Atomic # 6 Polarization: -43.90 SS G_CDS: 4.21 Total: -39.69 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -3.91 Total: -81.91 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Atomic # 16 Polarization: -2.86 SS G_CDS: -1.21 Total: -4.07 kcal Total: -67.42 2.07 -65.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276304785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.216 kcal (2) G-P(sol) polarization free energy of solvation -67.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds