Wall clock time and date at job start Tue Mar 31 2020 09:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46746 * 2 1 4 4 C 1.52998 * 109.46887 * 240.00561 * 2 1 3 5 5 C 1.50703 * 109.47374 * 61.85849 * 4 2 1 6 6 H 1.08004 * 119.99903 * 5.08708 * 5 4 2 7 7 C 1.37883 * 120.00322 * 185.08900 * 5 4 2 8 8 N 1.31519 * 119.99637 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99890 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46949 * 89.99935 * 9 7 5 11 11 H 1.48501 * 109.46947 * 209.99643 * 9 7 5 12 12 H 1.48493 * 109.47278 * 329.99851 * 9 7 5 13 13 N 1.46893 * 109.47391 * 120.00676 * 2 1 3 14 14 C 1.47903 * 111.00366 * 59.87421 * 13 2 1 15 15 C 1.53992 * 107.05966 * 145.84572 * 14 13 2 16 16 C 1.54592 * 105.14074 * 358.77542 * 15 14 13 17 17 H 1.08996 * 110.72411 * 96.57945 * 16 15 14 18 18 C 1.52998 * 110.72458 * 219.68470 * 16 15 14 19 19 S 1.81399 * 109.47364 * 293.54901 * 18 16 15 20 20 C 1.76196 * 103.00148 * 180.02562 * 19 18 16 21 21 C 1.38977 * 120.07924 * 359.72177 * 20 19 18 22 22 C 1.38085 * 119.91465 * 179.76645 * 21 20 19 23 23 C 1.38299 * 120.08136 * 0.49204 * 22 21 20 24 24 C 1.38306 * 120.16258 * 359.76263 * 23 22 21 25 25 C 1.38082 * 120.07827 * 359.97438 * 24 23 22 26 26 C 1.48535 * 111.00075 * 177.27168 * 13 2 1 27 27 H 1.09004 * 109.47013 * 299.99119 * 1 2 3 28 28 H 1.09001 * 109.47719 * 59.99358 * 1 2 3 29 29 H 1.09004 * 109.46889 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47136 * 181.85713 * 4 2 1 31 31 H 1.09006 * 109.47348 * 301.85779 * 4 2 1 32 32 H 0.96996 * 119.99752 * 180.02562 * 8 7 5 33 33 H 1.08993 * 109.91618 * 26.48722 * 14 13 2 34 34 H 1.09009 * 110.08106 * 265.29093 * 14 13 2 35 35 H 1.08998 * 110.30540 * 239.85799 * 15 14 13 36 36 H 1.09004 * 110.39099 * 117.73885 * 15 14 13 37 37 H 1.08992 * 109.47488 * 173.54443 * 18 16 15 38 38 H 1.09012 * 109.46944 * 53.54615 * 18 16 15 39 39 H 1.07993 * 120.04171 * 359.97438 * 21 20 19 40 40 H 1.07996 * 119.95616 * 180.23071 * 22 21 20 41 41 H 1.08003 * 119.91672 * 179.74676 * 23 22 21 42 42 H 1.07997 * 119.95712 * 179.97438 * 24 23 22 43 43 H 1.07993 * 120.03652 * 179.97438 * 25 24 23 44 44 H 1.08996 * 110.66574 * 81.84502 * 26 13 2 45 45 H 1.08995 * 110.66787 * 318.70870 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.5756 0.0155 -2.4793 6 1 1.0473 0.9523 -2.3805 7 6 1.8251 -0.5065 -3.7309 8 7 2.4689 -1.6470 -3.8513 9 14 1.2488 0.4063 -5.2554 10 1 2.3127 1.3397 -5.7052 11 1 0.9573 -0.5697 -6.3360 12 1 0.0186 1.1744 -4.9370 13 7 2.0197 -0.6926 1.1993 14 6 1.5431 -2.0923 1.2349 15 6 2.6572 -2.9325 1.8861 16 6 3.7964 -1.9309 2.1841 17 1 3.7471 -1.5869 3.2172 18 6 5.1602 -2.5585 1.8891 19 16 5.4681 -3.9123 3.0567 20 6 7.0558 -4.5016 2.5705 21 6 7.7217 -3.9101 1.5035 22 6 8.9679 -4.3715 1.1285 23 6 9.5491 -5.4275 1.8066 24 6 8.8871 -6.0220 2.8654 25 6 7.6430 -5.5624 3.2496 26 6 3.5030 -0.7698 1.2010 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1294 -0.7501 -1.2329 31 1 1.6496 -1.7388 -1.2663 32 1 2.6447 -2.0141 -4.7317 33 1 1.3551 -2.4464 0.2214 34 1 0.6308 -2.1620 1.8275 35 1 3.0018 -3.7032 1.1966 36 1 2.3000 -3.3854 2.8110 37 1 5.9386 -1.8030 1.9954 38 1 5.1684 -2.9479 0.8710 39 1 7.2664 -3.0885 0.9707 40 1 9.4875 -3.9100 0.3019 41 1 10.5222 -5.7889 1.5083 42 1 9.3439 -6.8466 3.3924 43 1 7.1266 -6.0274 4.0763 44 1 3.9363 0.1616 1.5654 45 1 3.8771 -1.0055 0.2048 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276304787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:22:34 Heat of formation + Delta-G solvation = 18.424178 kcal Electronic energy + Delta-G solvation = -22307.336245 eV Core-core repulsion = 19222.194468 eV Total energy + Delta-G solvation = -3085.141776 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.10449 -39.04001 -34.89658 -32.58692 -31.37698 -31.10002 -30.22298 -28.84698 -27.14087 -25.44348 -23.42207 -22.88452 -22.62605 -21.86527 -20.04443 -18.50644 -17.82818 -16.72405 -16.41741 -15.79457 -15.20212 -14.95196 -14.75442 -14.51372 -13.96180 -13.91680 -13.62946 -13.43358 -13.32808 -13.02491 -12.79390 -12.36118 -11.95150 -11.82852 -11.56100 -11.44870 -11.31478 -10.95846 -10.88600 -10.79809 -10.75642 -10.55160 -10.47647 -10.31793 -10.03220 -9.87344 -9.78434 -9.63595 -9.16259 -9.12863 -8.37746 -7.55578 -7.45635 -6.05772 -4.07307 1.05207 1.19255 1.44251 2.37323 3.27742 3.34661 3.37616 3.54622 4.39696 4.48821 4.67813 4.73717 4.76206 4.91450 4.98950 5.02061 5.21356 5.29144 5.32154 5.36457 5.52762 5.53793 5.57346 5.80142 5.83308 5.91735 5.96318 6.10790 6.11387 6.16252 6.19834 6.25141 6.32073 6.35586 6.40905 6.43546 6.53206 6.72335 6.83775 6.90599 6.99646 7.39235 7.49741 7.70397 7.77560 7.96764 8.38181 8.98301 9.56257 11.05286 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.015647 B = 0.003232 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.065827 B = 8660.912625 C =10049.578524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.069 3.931 3 H 0.069 0.931 4 C -0.005 4.005 5 C -0.514 4.514 6 H 0.057 0.943 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.515 5.515 14 C 0.028 3.972 15 C -0.123 4.123 16 C -0.074 4.074 17 H 0.087 0.913 18 C -0.095 4.095 19 S -0.115 6.115 20 C -0.081 4.081 21 C -0.133 4.133 22 C -0.099 4.099 23 C -0.131 4.131 24 C -0.104 4.104 25 C -0.105 4.105 26 C 0.038 3.962 27 H 0.038 0.962 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.016 0.984 31 H 0.025 0.975 32 H 0.260 0.740 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.075 0.925 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.134 -6.410 14.046 18.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.038 4.038 3 H 0.087 0.913 4 C -0.043 4.043 5 C -0.552 4.552 6 H 0.075 0.925 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.239 5.239 14 C -0.100 4.100 15 C -0.161 4.161 16 C -0.095 4.095 17 H 0.105 0.895 18 C -0.244 4.244 19 S 0.130 5.870 20 C -0.194 4.194 21 C -0.157 4.157 22 C -0.119 4.119 23 C -0.152 4.152 24 C -0.124 4.124 25 C -0.129 4.129 26 C -0.092 4.092 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.034 0.966 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.144 0.856 44 H 0.093 0.907 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.136 -6.542 15.257 18.949 hybrid contribution 0.954 0.371 -2.802 2.983 sum 10.090 -6.172 12.456 17.176 Atomic orbital electron populations 1.21685 0.95162 1.01094 1.00542 1.21921 0.95269 0.97849 0.88788 0.91299 1.19728 0.96166 0.96476 0.91880 1.21147 1.36402 1.06950 0.90737 0.92489 1.25014 0.95271 0.94962 0.99139 1.69958 1.41197 1.18795 1.23498 0.86623 0.79147 0.79562 0.82875 1.20710 1.21265 1.19832 1.65106 1.05852 1.13675 1.39274 1.22890 0.97408 0.88824 1.00851 1.22478 0.95250 0.97578 1.00819 1.21827 0.90893 0.95961 1.00773 0.89501 1.23806 1.01648 0.97925 1.01014 1.85470 1.16072 1.40395 1.45020 1.21882 0.98474 0.99755 0.99241 1.21285 0.96135 1.01132 0.97158 1.21101 0.94890 0.96558 0.99371 1.21169 1.00273 0.97028 0.96687 1.21072 0.94575 0.99606 0.97118 1.20761 0.95772 0.96162 1.00181 1.23309 0.90356 0.96918 0.98580 0.94284 0.91536 0.93611 0.96638 0.95691 0.93047 0.91820 0.91384 0.91262 0.91401 0.89314 0.88938 0.85592 0.85694 0.85954 0.85702 0.85629 0.90695 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.86 37.16 0.33 -2.11 16 2 C 0.07 1.42 2.54 -67.72 -0.17 1.25 16 3 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 4 C 0.00 -0.12 3.85 -27.88 -0.11 -0.22 16 5 C -0.51 -13.96 8.28 -34.44 -0.29 -14.25 16 6 H 0.06 1.51 7.04 -52.48 -0.37 1.14 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.24 13.29 55.43 0.74 -25.51 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.52 -9.21 5.33 -222.51 -1.18 -10.40 16 14 C 0.03 0.48 5.17 -2.75 -0.01 0.46 16 15 C -0.12 -1.79 6.02 -25.38 -0.15 -1.94 16 16 C -0.07 -1.01 3.09 -88.76 -0.27 -1.29 16 17 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 18 C -0.10 -1.20 3.71 37.16 0.14 -1.06 16 19 S -0.12 -1.43 21.47 -107.50 -2.31 -3.74 16 20 C -0.08 -0.99 6.11 -39.04 -0.24 -1.23 16 21 C -0.13 -1.58 9.36 -39.36 -0.37 -1.95 16 22 C -0.10 -1.04 10.04 -39.62 -0.40 -1.43 16 23 C -0.13 -1.22 10.04 -39.53 -0.40 -1.62 16 24 C -0.10 -0.97 10.04 -39.61 -0.40 -1.37 16 25 C -0.10 -1.14 9.79 -39.37 -0.39 -1.52 16 26 C 0.04 0.62 5.82 -1.89 -0.01 0.61 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.34 6.84 -51.93 -0.36 0.99 16 29 H 0.04 0.87 7.05 -51.93 -0.37 0.50 16 30 H 0.02 0.41 5.92 -51.93 -0.31 0.10 16 31 H 0.02 0.67 6.07 -51.93 -0.31 0.35 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 33 H 0.06 1.25 5.32 -51.93 -0.28 0.97 16 34 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 35 H 0.07 1.05 7.80 -51.93 -0.41 0.64 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 1.02 7.76 -51.93 -0.40 0.61 16 38 H 0.09 1.26 7.67 -51.92 -0.40 0.86 16 39 H 0.13 1.45 5.88 -52.49 -0.31 1.14 16 40 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 41 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 42 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.07 1.24 5.45 -51.93 -0.28 0.96 16 LS Contribution 361.30 15.07 5.44 5.44 Total: -1.00 -29.22 361.30 -12.31 -41.53 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.15 Total: 2.53 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: -2.83 Total: -26.17 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: -0.45 Total: -35.90 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.31 Total: -3.74 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.22 -12.31 -41.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276304787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.956 kcal (2) G-P(sol) polarization free energy of solvation -29.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds