Wall clock time and date at job start Tue Mar 31 2020 09:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46746 * 2 1 4 4 C 1.52998 * 109.46887 * 240.00561 * 2 1 3 5 5 C 1.50703 * 109.47374 * 61.85849 * 4 2 1 6 6 H 1.08004 * 119.99903 * 5.08708 * 5 4 2 7 7 C 1.37883 * 120.00322 * 185.08900 * 5 4 2 8 8 N 1.31519 * 119.99637 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99890 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46949 * 89.99935 * 9 7 5 11 11 H 1.48501 * 109.46947 * 209.99643 * 9 7 5 12 12 H 1.48493 * 109.47278 * 329.99851 * 9 7 5 13 13 N 1.46893 * 109.47391 * 120.00676 * 2 1 3 14 14 C 1.47903 * 111.00366 * 59.87421 * 13 2 1 15 15 C 1.53992 * 107.05966 * 145.84572 * 14 13 2 16 16 C 1.54592 * 105.14074 * 358.77542 * 15 14 13 17 17 H 1.08996 * 110.72411 * 96.57945 * 16 15 14 18 18 C 1.52998 * 110.72458 * 219.68470 * 16 15 14 19 19 S 1.81399 * 109.47364 * 293.54901 * 18 16 15 20 20 C 1.76196 * 103.00148 * 180.02562 * 19 18 16 21 21 C 1.38977 * 120.07924 * 359.72177 * 20 19 18 22 22 C 1.38085 * 119.91465 * 179.76645 * 21 20 19 23 23 C 1.38299 * 120.08136 * 0.49204 * 22 21 20 24 24 C 1.38306 * 120.16258 * 359.76263 * 23 22 21 25 25 C 1.38082 * 120.07827 * 359.97438 * 24 23 22 26 26 C 1.48535 * 111.00075 * 177.27168 * 13 2 1 27 27 H 1.09004 * 109.47013 * 299.99119 * 1 2 3 28 28 H 1.09001 * 109.47719 * 59.99358 * 1 2 3 29 29 H 1.09004 * 109.46889 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47136 * 181.85713 * 4 2 1 31 31 H 1.09006 * 109.47348 * 301.85779 * 4 2 1 32 32 H 0.96996 * 119.99752 * 180.02562 * 8 7 5 33 33 H 1.08993 * 109.91618 * 26.48722 * 14 13 2 34 34 H 1.09009 * 110.08106 * 265.29093 * 14 13 2 35 35 H 1.08998 * 110.30540 * 239.85799 * 15 14 13 36 36 H 1.09004 * 110.39099 * 117.73885 * 15 14 13 37 37 H 1.08992 * 109.47488 * 173.54443 * 18 16 15 38 38 H 1.09012 * 109.46944 * 53.54615 * 18 16 15 39 39 H 1.07993 * 120.04171 * 359.97438 * 21 20 19 40 40 H 1.07996 * 119.95616 * 180.23071 * 22 21 20 41 41 H 1.08003 * 119.91672 * 179.74676 * 23 22 21 42 42 H 1.07997 * 119.95712 * 179.97438 * 24 23 22 43 43 H 1.07993 * 120.03652 * 179.97438 * 25 24 23 44 44 H 1.08996 * 110.66574 * 81.84502 * 26 13 2 45 45 H 1.08995 * 110.66787 * 318.70870 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.5756 0.0155 -2.4793 6 1 1.0473 0.9523 -2.3805 7 6 1.8251 -0.5065 -3.7309 8 7 2.4689 -1.6470 -3.8513 9 14 1.2488 0.4063 -5.2554 10 1 2.3127 1.3397 -5.7052 11 1 0.9573 -0.5697 -6.3360 12 1 0.0186 1.1744 -4.9370 13 7 2.0197 -0.6926 1.1993 14 6 1.5431 -2.0923 1.2349 15 6 2.6572 -2.9325 1.8861 16 6 3.7964 -1.9309 2.1841 17 1 3.7471 -1.5869 3.2172 18 6 5.1602 -2.5585 1.8891 19 16 5.4681 -3.9123 3.0567 20 6 7.0558 -4.5016 2.5705 21 6 7.7217 -3.9101 1.5035 22 6 8.9679 -4.3715 1.1285 23 6 9.5491 -5.4275 1.8066 24 6 8.8871 -6.0220 2.8654 25 6 7.6430 -5.5624 3.2496 26 6 3.5030 -0.7698 1.2010 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1294 -0.7501 -1.2329 31 1 1.6496 -1.7388 -1.2663 32 1 2.6447 -2.0141 -4.7317 33 1 1.3551 -2.4464 0.2214 34 1 0.6308 -2.1620 1.8275 35 1 3.0018 -3.7032 1.1966 36 1 2.3000 -3.3854 2.8110 37 1 5.9386 -1.8030 1.9954 38 1 5.1684 -2.9479 0.8710 39 1 7.2664 -3.0885 0.9707 40 1 9.4875 -3.9100 0.3019 41 1 10.5222 -5.7889 1.5083 42 1 9.3439 -6.8466 3.3924 43 1 7.1266 -6.0274 4.0763 44 1 3.9363 0.1616 1.5654 45 1 3.8771 -1.0055 0.2048 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276304787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:22:33 Heat of formation + Delta-G solvation = 3.937166 kcal Electronic energy + Delta-G solvation = -22307.964449 eV Core-core repulsion = 19222.194468 eV Total energy + Delta-G solvation = -3085.769980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.53538 -39.82574 -36.46710 -34.52669 -32.34526 -31.89889 -31.53837 -30.23638 -29.02626 -26.69513 -25.37087 -23.72636 -23.49597 -23.31282 -21.27250 -20.07791 -18.82793 -18.57978 -17.38236 -16.99498 -16.62046 -16.46829 -15.95720 -15.60924 -15.32773 -15.14968 -14.82408 -14.69206 -14.48546 -14.30711 -13.88461 -13.84997 -13.65744 -13.19857 -13.04729 -12.80503 -12.60657 -12.58574 -12.28369 -12.21667 -12.12324 -12.04372 -11.81529 -11.67585 -11.51426 -11.37142 -11.17271 -11.08840 -10.71288 -10.50918 -9.96387 -9.14527 -8.39274 -8.20387 -6.29545 0.23674 0.39213 0.48384 1.38037 1.38427 1.40532 1.49402 2.38967 2.75150 3.11534 3.13443 3.58242 3.69411 3.79457 3.90305 3.99609 4.16111 4.22107 4.29652 4.32114 4.39462 4.48794 4.54330 4.55479 4.59195 4.66050 4.72368 4.78336 4.81721 4.92693 5.03743 5.04385 5.10208 5.15124 5.21449 5.27025 5.29953 5.39732 5.43742 5.51914 5.54523 5.61001 5.73948 5.97193 6.07548 6.10708 6.37037 6.85962 7.38257 8.90507 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.015647 B = 0.003232 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.065827 B = 8660.912625 C =10049.578524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.078 3.922 3 H 0.066 0.934 4 C 0.007 3.993 5 C -0.528 4.528 6 H 0.062 0.938 7 C 0.001 3.999 8 N -0.932 5.932 9 Si 0.958 3.042 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.262 1.262 13 N -0.509 5.509 14 C 0.029 3.971 15 C -0.117 4.117 16 C -0.061 4.061 17 H 0.103 0.897 18 C -0.089 4.089 19 S -0.117 6.117 20 C -0.102 4.102 21 C -0.153 4.153 22 C -0.111 4.111 23 C -0.129 4.129 24 C -0.103 4.103 25 C -0.115 4.115 26 C 0.036 3.964 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.041 0.959 30 H -0.008 1.008 31 H -0.002 1.002 32 H 0.261 0.739 33 H 0.030 0.970 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.119 0.881 40 H 0.139 0.861 41 H 0.151 0.849 42 H 0.155 0.845 43 H 0.136 0.864 44 H 0.089 0.911 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.719 -6.379 15.257 19.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.030 4.030 3 H 0.084 0.916 4 C -0.031 4.031 5 C -0.567 4.567 6 H 0.080 0.920 7 C -0.196 4.196 8 N -0.573 5.573 9 Si 0.783 3.217 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.187 1.187 13 N -0.232 5.232 14 C -0.099 4.099 15 C -0.155 4.155 16 C -0.081 4.081 17 H 0.121 0.879 18 C -0.237 4.237 19 S 0.128 5.872 20 C -0.215 4.215 21 C -0.177 4.177 22 C -0.130 4.130 23 C -0.150 4.150 24 C -0.122 4.122 25 C -0.139 4.139 26 C -0.094 4.094 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.010 0.990 31 H 0.016 0.984 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.092 0.908 39 H 0.137 0.863 40 H 0.157 0.843 41 H 0.168 0.832 42 H 0.173 0.827 43 H 0.154 0.846 44 H 0.107 0.893 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.723 -6.504 16.480 20.210 hybrid contribution 0.861 0.293 -3.155 3.284 sum 10.584 -6.211 13.325 18.115 Atomic orbital electron populations 1.21599 0.93942 1.01065 1.01151 1.21728 0.96229 0.97253 0.87829 0.91575 1.19571 0.94576 0.95345 0.93587 1.21565 1.36042 1.07194 0.91849 0.92031 1.25900 0.95414 0.95773 1.02534 1.70097 1.42559 1.20442 1.24209 0.85549 0.79059 0.78328 0.78766 1.19987 1.21085 1.18664 1.65138 1.06812 1.14100 1.37134 1.22904 0.99036 0.88535 0.99466 1.22435 0.94721 0.97145 1.01224 1.21727 0.91122 0.94581 1.00668 0.87864 1.23649 1.01349 0.98473 1.00274 1.85302 1.16999 1.40316 1.44571 1.22009 0.98432 1.00888 1.00146 1.21384 0.97120 1.01592 0.97626 1.21385 0.94507 0.97106 1.00012 1.21560 1.01235 0.96121 0.96062 1.21463 0.93876 0.99955 0.96935 1.21029 0.96568 0.95840 1.00451 1.23334 0.89373 0.98798 0.97875 0.91653 0.92828 0.93955 0.98954 0.98405 0.93049 0.95135 0.89765 0.92427 0.89213 0.88303 0.90753 0.86319 0.84280 0.83166 0.82725 0.84594 0.89251 0.94503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.55 8.86 71.98 0.64 -3.91 16 2 C 0.08 3.23 2.54 44.92 0.11 3.34 16 3 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 4 C 0.01 0.37 3.85 29.85 0.11 0.48 16 5 C -0.53 -29.33 8.28 25.60 0.21 -29.11 16 6 H 0.06 3.29 7.04 -2.91 -0.02 3.27 16 7 C 0.00 0.08 5.46 84.66 0.46 0.54 16 8 N -0.93 -56.34 13.29 21.45 0.28 -56.06 16 9 Si 0.96 44.10 29.54 68.60 2.03 46.12 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 12 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 13 N -0.51 -18.12 5.33 -857.88 -4.57 -22.69 16 14 C 0.03 0.97 5.17 86.45 0.45 1.42 16 15 C -0.12 -3.37 6.02 31.47 0.19 -3.18 16 16 C -0.06 -1.63 3.09 -9.59 -0.03 -1.66 16 17 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 18 C -0.09 -2.26 3.71 71.98 0.27 -2.00 16 19 S -0.12 -2.85 21.47 -56.49 -1.21 -4.07 16 20 C -0.10 -2.47 6.11 22.62 0.14 -2.33 16 21 C -0.15 -3.68 9.36 22.41 0.21 -3.47 16 22 C -0.11 -2.20 10.04 22.25 0.22 -1.98 16 23 C -0.13 -2.13 10.04 22.30 0.22 -1.91 16 24 C -0.10 -1.68 10.04 22.25 0.22 -1.46 16 25 C -0.12 -2.35 9.79 22.41 0.22 -2.13 16 26 C 0.04 1.18 5.82 86.65 0.50 1.69 16 27 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 28 H 0.05 2.14 6.84 -2.39 -0.02 2.13 16 29 H 0.04 1.60 7.05 -2.38 -0.02 1.59 16 30 H -0.01 -0.42 5.92 -2.39 -0.01 -0.44 16 31 H 0.00 -0.13 6.07 -2.38 -0.01 -0.14 16 32 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 33 H 0.03 1.25 5.32 -2.39 -0.01 1.24 16 34 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 35 H 0.06 1.79 7.80 -2.39 -0.02 1.77 16 36 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.10 2.29 7.76 -2.39 -0.02 2.27 16 38 H 0.07 2.16 7.67 -2.38 -0.02 2.14 16 39 H 0.12 2.89 5.88 -2.91 -0.02 2.87 16 40 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 41 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 42 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 43 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 44 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 45 H 0.04 1.45 5.45 -2.39 -0.01 1.44 16 Total: -1.00 -63.92 361.30 1.65 -62.28 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.96 Total: 20.08 kcal Atomic # 6 Polarization: -49.83 SS G_CDS: 4.16 Total: -45.67 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -4.28 Total: -78.74 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -2.85 SS G_CDS: -1.21 Total: -4.07 kcal Total: -63.92 1.65 -62.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276304787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.215 kcal (2) G-P(sol) polarization free energy of solvation -63.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds