Wall clock time and date at job start Tue Mar 31 2020 08:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50698 * 120.00216 * 2 1 4 4 C 1.50706 * 119.99491 * 179.97438 * 2 1 3 5 5 N 1.46907 * 109.46706 * 94.38461 * 4 2 1 6 6 C 1.46896 * 111.00111 * 302.68208 * 5 4 2 7 7 C 1.53001 * 109.47245 * 288.65221 * 6 5 4 8 8 C 1.53000 * 109.47120 * 185.09170 * 7 6 5 9 9 S 1.81001 * 109.47156 * 179.97438 * 8 7 6 10 10 C 1.76199 * 99.99963 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00038 * 0.02562 * 10 9 8 12 12 C 1.38802 * 120.00108 * 179.97438 * 10 9 8 13 13 N 1.31629 * 119.99535 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00006 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47298 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46766 * 120.00590 * 14 12 10 17 17 H 1.48499 * 109.47123 * 240.00137 * 14 12 10 18 18 C 1.46895 * 110.99955 * 66.63876 * 5 4 2 19 19 C 1.50700 * 109.47076 * 76.67059 * 18 5 4 20 20 C 1.38240 * 120.00131 * 84.26976 * 19 18 5 21 21 C 1.38226 * 120.00326 * 180.02562 * 20 19 18 22 22 C 1.38238 * 120.00228 * 359.94763 * 21 20 19 23 23 C 1.38234 * 119.99745 * 0.28268 * 22 21 20 24 24 C 1.38235 * 120.00422 * 264.24365 * 19 18 5 25 25 H 1.08000 * 119.99387 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.00275 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47050 * 274.51064 * 3 2 1 28 28 H 1.09001 * 109.47196 * 34.51126 * 3 2 1 29 29 H 1.08995 * 109.46728 * 154.51275 * 3 2 1 30 30 H 1.08994 * 109.47017 * 334.38703 * 4 2 1 31 31 H 1.08997 * 109.46846 * 214.38227 * 4 2 1 32 32 H 1.08998 * 109.47014 * 48.65089 * 6 5 4 33 33 H 1.08997 * 109.47084 * 168.65213 * 6 5 4 34 34 H 1.08998 * 109.47042 * 305.08791 * 7 6 5 35 35 H 1.08998 * 109.47517 * 65.08647 * 7 6 5 36 36 H 1.08998 * 109.46854 * 299.99736 * 8 7 6 37 37 H 1.09006 * 109.47335 * 59.99722 * 8 7 6 38 38 H 0.97002 * 119.99819 * 179.97438 * 13 12 10 39 39 H 1.09004 * 109.47436 * 316.67650 * 18 5 4 40 40 H 1.08991 * 109.47205 * 196.66957 * 18 5 4 41 41 H 1.08007 * 119.99495 * 359.97281 * 20 19 18 42 42 H 1.08007 * 120.00038 * 179.97438 * 21 20 19 43 43 H 1.08001 * 120.00104 * 180.02562 * 22 21 20 44 44 H 1.07996 * 119.99830 * 179.72601 * 23 22 21 45 45 H 1.07997 * 119.99560 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3052 0.0006 5 7 2.4000 -1.6769 -1.3803 6 6 1.1911 -1.7715 -2.2095 7 6 0.3920 -3.0124 -1.8064 8 6 -0.7987 -3.1816 -2.7522 9 16 -1.7437 -4.6501 -2.2758 10 6 -3.0159 -4.6037 -3.4940 11 1 -3.0288 -3.8149 -4.2315 12 6 -4.0009 -5.5816 -3.5064 13 7 -3.9848 -6.5432 -2.6078 14 14 -5.3500 -5.5319 -4.7974 15 1 -5.1438 -4.3588 -5.6841 16 1 -5.3072 -6.7768 -5.6060 17 1 -6.6713 -5.4213 -4.1286 18 6 3.3634 -0.7316 -1.9600 19 6 4.7386 -1.0178 -1.4141 20 6 5.5246 -1.9938 -1.9976 21 6 6.7857 -2.2567 -1.4965 22 6 7.2615 -1.5428 -0.4126 23 6 6.4737 -0.5700 0.1739 24 6 5.2143 -0.3039 -0.3301 25 1 -0.5399 0.9354 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 2.1753 1.6601 -1.0245 28 1 1.5120 2.0431 0.5822 29 1 3.0486 1.1558 0.4422 30 1 1.4426 -2.0829 0.4452 31 1 2.9796 -1.1956 0.5809 32 1 0.5791 -0.8817 -2.0623 33 1 1.4754 -1.8475 -3.2589 34 1 1.0322 -3.8925 -1.8673 35 1 0.0308 -2.8960 -0.7846 36 1 -1.4390 -2.3016 -2.6913 37 1 -0.4375 -3.2982 -3.7740 38 1 -4.6734 -7.2264 -2.6162 39 1 3.0743 0.2868 -1.7006 40 1 3.3728 -0.8417 -3.0443 41 1 5.1529 -2.5516 -2.8445 42 1 7.3997 -3.0196 -1.9522 43 1 8.2471 -1.7479 -0.0214 44 1 6.8436 -0.0154 1.0235 45 1 4.6003 0.4586 0.1257 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279373515.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:21 Heat of formation + Delta-G solvation = 33.661775 kcal Electronic energy + Delta-G solvation = -22148.297468 eV Core-core repulsion = 19063.816443 eV Total energy + Delta-G solvation = -3084.481025 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.86376 -38.33101 -34.44817 -33.33119 -32.40311 -31.04702 -31.00057 -27.85845 -26.93277 -26.24664 -25.44143 -23.01465 -22.62745 -20.99451 -20.80721 -18.39338 -17.43072 -16.84646 -16.19873 -15.86830 -15.56031 -14.97468 -14.78522 -14.68411 -14.20203 -14.17341 -13.78506 -13.65008 -13.42842 -13.03609 -12.88101 -12.66027 -12.07014 -12.00885 -11.88608 -11.76184 -11.44008 -11.37484 -11.28188 -11.06708 -11.02625 -10.94341 -10.74447 -10.57393 -10.22090 -9.50704 -9.15760 -9.04300 -9.02527 -8.86204 -8.27683 -8.23013 -6.49210 -6.20504 -3.90034 1.21482 1.29131 2.12009 3.22113 3.23664 3.31191 3.52354 3.67042 4.18805 4.25846 4.64604 4.66206 4.80011 4.82792 4.87494 4.91781 5.10000 5.15494 5.25823 5.27087 5.35547 5.38541 5.43156 5.47881 5.50957 5.58989 5.68741 5.76348 5.83073 5.89577 5.90448 5.92783 5.94416 5.96610 6.15635 6.33155 6.38552 6.39391 6.51659 6.55083 6.65349 6.71400 6.82679 6.88413 7.07753 7.14980 7.63181 8.39337 9.25947 10.87738 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.021536 B = 0.002718 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.811474 B =10297.422192 C =11066.573922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.173 4.173 3 C -0.119 4.119 4 C 0.084 3.916 5 N -0.519 5.519 6 C 0.051 3.949 7 C -0.090 4.090 8 C -0.111 4.111 9 S -0.133 6.133 10 C -0.514 4.514 11 H 0.072 0.928 12 C 0.070 3.930 13 N -0.870 5.870 14 Si 0.917 3.083 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.078 3.922 19 C -0.068 4.068 20 C -0.098 4.098 21 C -0.121 4.121 22 C -0.125 4.125 23 C -0.123 4.123 24 C -0.120 4.120 25 H 0.094 0.906 26 H 0.106 0.894 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.266 0.734 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.544 15.114 4.943 25.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.175 4.175 3 C -0.175 4.175 4 C -0.043 4.043 5 N -0.240 5.240 6 C -0.078 4.078 7 C -0.129 4.129 8 C -0.260 4.260 9 S 0.095 5.905 10 C -0.663 4.663 11 H 0.090 0.910 12 C -0.139 4.139 13 N -0.505 5.505 14 Si 0.744 3.256 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.049 4.049 19 C -0.069 4.069 20 C -0.116 4.116 21 C -0.140 4.140 22 C -0.143 4.143 23 C -0.141 4.141 24 C -0.138 4.138 25 H 0.112 0.888 26 H 0.124 0.876 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 19.847 13.721 5.838 24.825 hybrid contribution -1.523 1.617 -1.797 2.857 sum 18.324 15.338 4.041 24.235 Atomic orbital electron populations 1.23914 0.95335 1.02400 0.99277 1.22407 0.96098 0.96920 1.02060 1.21043 0.99986 0.94930 1.01575 1.21398 0.99380 0.92718 0.90806 1.62359 1.12472 1.47198 1.01977 1.22358 0.90213 0.98605 0.96653 1.21229 0.95309 0.97370 0.98973 1.23224 0.99038 1.02761 1.01009 1.84641 1.30345 1.30450 1.45034 1.22731 1.12095 1.14945 1.16483 0.90991 1.25015 0.97726 0.94668 0.96454 1.70038 1.33893 1.12986 1.33625 0.86127 0.80694 0.78171 0.80608 1.19639 1.20584 1.20602 1.21284 0.89131 0.95460 0.99065 1.19789 0.95287 0.96007 0.95775 1.21066 0.93759 0.96706 1.00076 1.21160 0.96173 0.99694 0.96924 1.21119 0.99768 0.96761 0.96691 1.21089 0.94638 0.98432 0.99986 1.21172 0.96050 1.00141 0.96450 0.88751 0.87582 0.91673 0.92005 0.91926 0.89634 0.90372 0.93658 0.91177 0.90869 0.91918 0.92430 0.92269 0.92406 0.92515 0.90318 0.85952 0.86233 0.86446 0.86411 0.86262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 12.10 29.01 0.35 -1.60 16 2 C -0.17 -1.83 4.23 -101.07 -0.43 -2.26 16 3 C -0.12 -1.01 8.58 36.00 0.31 -0.70 16 4 C 0.08 0.98 5.26 -4.97 -0.03 0.95 16 5 N -0.52 -6.31 4.58 -237.52 -1.09 -7.40 16 6 C 0.05 0.68 4.64 -3.83 -0.02 0.67 16 7 C -0.09 -1.49 5.14 -26.73 -0.14 -1.63 16 8 C -0.11 -2.26 5.67 37.16 0.21 -2.05 16 9 S -0.13 -3.51 21.44 -107.50 -2.30 -5.82 16 10 C -0.51 -14.87 9.50 30.94 0.29 -14.58 16 11 H 0.07 2.02 7.80 -52.49 -0.41 1.62 16 12 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 13 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 14 Si 0.92 21.71 29.55 -169.99 -5.02 16.69 16 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 C 0.08 0.82 5.01 -4.98 -0.02 0.79 16 19 C -0.07 -0.71 5.05 -104.62 -0.53 -1.24 16 20 C -0.10 -1.02 9.72 -39.59 -0.38 -1.40 16 21 C -0.12 -1.14 10.05 -39.59 -0.40 -1.54 16 22 C -0.13 -1.10 10.05 -39.58 -0.40 -1.50 16 23 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 24 C -0.12 -1.13 8.50 -39.58 -0.34 -1.47 16 25 H 0.09 0.98 8.05 -52.49 -0.42 0.55 16 26 H 0.11 1.37 7.20 -52.49 -0.38 0.99 16 27 H 0.06 0.54 6.87 -51.93 -0.36 0.19 16 28 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 29 H 0.06 0.48 5.51 -51.93 -0.29 0.19 16 30 H 0.09 1.09 6.75 -51.93 -0.35 0.74 16 31 H 0.08 0.86 6.48 -51.93 -0.34 0.53 16 32 H 0.05 0.61 5.50 -51.93 -0.29 0.32 16 33 H 0.07 0.94 7.69 -51.93 -0.40 0.54 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.06 1.05 6.22 -51.93 -0.32 0.73 16 36 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 37 H 0.06 1.20 8.14 -51.91 -0.42 0.78 16 38 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.06 0.55 4.27 -51.93 -0.22 0.33 16 40 H 0.08 0.81 7.62 -51.93 -0.40 0.41 16 41 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 42 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 43 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 45 H 0.12 0.98 5.52 -52.49 -0.29 0.69 16 LS Contribution 367.67 15.07 5.54 5.54 Total: -1.00 -31.17 367.67 -11.12 -42.29 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -6.97 Total: 1.31 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: -2.01 Total: -27.13 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: -0.35 Total: -32.88 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -2.30 Total: -5.82 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.17 -11.12 -42.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279373515.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.947 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds