Wall clock time and date at job start Tue Mar 31 2020 08:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50698 * 120.00216 * 2 1 4 4 C 1.50706 * 119.99491 * 179.97438 * 2 1 3 5 5 N 1.46907 * 109.46706 * 94.38461 * 4 2 1 6 6 C 1.46896 * 111.00111 * 302.68208 * 5 4 2 7 7 C 1.53001 * 109.47245 * 288.65221 * 6 5 4 8 8 C 1.53000 * 109.47120 * 185.09170 * 7 6 5 9 9 S 1.81001 * 109.47156 * 179.97438 * 8 7 6 10 10 C 1.76199 * 99.99963 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00038 * 0.02562 * 10 9 8 12 12 C 1.38802 * 120.00108 * 179.97438 * 10 9 8 13 13 N 1.31629 * 119.99535 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00006 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47298 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46766 * 120.00590 * 14 12 10 17 17 H 1.48499 * 109.47123 * 240.00137 * 14 12 10 18 18 C 1.46895 * 110.99955 * 66.63876 * 5 4 2 19 19 C 1.50700 * 109.47076 * 76.67059 * 18 5 4 20 20 C 1.38240 * 120.00131 * 84.26976 * 19 18 5 21 21 C 1.38226 * 120.00326 * 180.02562 * 20 19 18 22 22 C 1.38238 * 120.00228 * 359.94763 * 21 20 19 23 23 C 1.38234 * 119.99745 * 0.28268 * 22 21 20 24 24 C 1.38235 * 120.00422 * 264.24365 * 19 18 5 25 25 H 1.08000 * 119.99387 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.00275 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47050 * 274.51064 * 3 2 1 28 28 H 1.09001 * 109.47196 * 34.51126 * 3 2 1 29 29 H 1.08995 * 109.46728 * 154.51275 * 3 2 1 30 30 H 1.08994 * 109.47017 * 334.38703 * 4 2 1 31 31 H 1.08997 * 109.46846 * 214.38227 * 4 2 1 32 32 H 1.08998 * 109.47014 * 48.65089 * 6 5 4 33 33 H 1.08997 * 109.47084 * 168.65213 * 6 5 4 34 34 H 1.08998 * 109.47042 * 305.08791 * 7 6 5 35 35 H 1.08998 * 109.47517 * 65.08647 * 7 6 5 36 36 H 1.08998 * 109.46854 * 299.99736 * 8 7 6 37 37 H 1.09006 * 109.47335 * 59.99722 * 8 7 6 38 38 H 0.97002 * 119.99819 * 179.97438 * 13 12 10 39 39 H 1.09004 * 109.47436 * 316.67650 * 18 5 4 40 40 H 1.08991 * 109.47205 * 196.66957 * 18 5 4 41 41 H 1.08007 * 119.99495 * 359.97281 * 20 19 18 42 42 H 1.08007 * 120.00038 * 179.97438 * 21 20 19 43 43 H 1.08001 * 120.00104 * 180.02562 * 22 21 20 44 44 H 1.07996 * 119.99830 * 179.72601 * 23 22 21 45 45 H 1.07997 * 119.99560 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3052 0.0006 5 7 2.4000 -1.6769 -1.3803 6 6 1.1911 -1.7715 -2.2095 7 6 0.3920 -3.0124 -1.8064 8 6 -0.7987 -3.1816 -2.7522 9 16 -1.7437 -4.6501 -2.2758 10 6 -3.0159 -4.6037 -3.4940 11 1 -3.0288 -3.8149 -4.2315 12 6 -4.0009 -5.5816 -3.5064 13 7 -3.9848 -6.5432 -2.6078 14 14 -5.3500 -5.5319 -4.7974 15 1 -5.1438 -4.3588 -5.6841 16 1 -5.3072 -6.7768 -5.6060 17 1 -6.6713 -5.4213 -4.1286 18 6 3.3634 -0.7316 -1.9600 19 6 4.7386 -1.0178 -1.4141 20 6 5.5246 -1.9938 -1.9976 21 6 6.7857 -2.2567 -1.4965 22 6 7.2615 -1.5428 -0.4126 23 6 6.4737 -0.5700 0.1739 24 6 5.2143 -0.3039 -0.3301 25 1 -0.5399 0.9354 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 2.1753 1.6601 -1.0245 28 1 1.5120 2.0431 0.5822 29 1 3.0486 1.1558 0.4422 30 1 1.4426 -2.0829 0.4452 31 1 2.9796 -1.1956 0.5809 32 1 0.5791 -0.8817 -2.0623 33 1 1.4754 -1.8475 -3.2589 34 1 1.0322 -3.8925 -1.8673 35 1 0.0308 -2.8960 -0.7846 36 1 -1.4390 -2.3016 -2.6913 37 1 -0.4375 -3.2982 -3.7740 38 1 -4.6734 -7.2264 -2.6162 39 1 3.0743 0.2868 -1.7006 40 1 3.3728 -0.8417 -3.0443 41 1 5.1529 -2.5516 -2.8445 42 1 7.3997 -3.0196 -1.9522 43 1 8.2471 -1.7479 -0.0214 44 1 6.8436 -0.0154 1.0235 45 1 4.6003 0.4586 0.1257 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279373515.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:21 Heat of formation + Delta-G solvation = 17.692802 kcal Electronic energy + Delta-G solvation = -22148.989934 eV Core-core repulsion = 19063.816443 eV Total energy + Delta-G solvation = -3085.173491 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.68087 -39.17519 -35.46076 -34.62419 -34.39993 -31.97736 -31.71006 -28.61469 -28.12144 -27.70451 -27.05262 -24.14350 -23.33441 -22.06446 -21.76644 -19.59078 -19.24038 -17.54563 -17.18379 -16.94928 -16.89973 -16.34404 -16.02379 -15.88039 -15.45118 -15.29620 -14.89789 -14.68785 -14.32937 -14.12990 -13.86511 -13.60453 -13.38654 -13.25204 -13.04479 -12.90425 -12.82320 -12.63198 -12.52903 -12.41971 -12.30273 -12.23994 -11.83931 -11.65975 -11.56498 -11.29607 -11.15213 -10.30902 -10.02061 -9.73024 -9.60199 -9.19528 -8.66266 -8.37423 -6.13396 0.49891 0.58827 1.24535 1.31159 1.37810 1.49034 1.75277 2.28201 2.80926 2.96719 3.24577 3.35791 3.86725 3.88382 3.91439 4.04227 4.08382 4.18596 4.23006 4.31043 4.33026 4.43335 4.48919 4.53940 4.66555 4.70772 4.73946 4.75000 4.81145 4.82874 4.86827 4.99842 5.02882 5.09623 5.18006 5.22199 5.27202 5.34600 5.39861 5.64279 5.67447 5.70509 5.78231 5.85675 6.12512 6.13870 6.18390 6.22081 7.04810 8.72290 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.021536 B = 0.002718 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.811474 B =10297.422192 C =11066.573922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.164 4.164 3 C -0.117 4.117 4 C 0.085 3.915 5 N -0.526 5.526 6 C 0.063 3.937 7 C -0.076 4.076 8 C -0.084 4.084 9 S -0.199 6.199 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.014 3.986 13 N -0.908 5.908 14 Si 0.995 3.005 15 H -0.262 1.262 16 H -0.271 1.271 17 H -0.271 1.271 18 C 0.081 3.919 19 C -0.081 4.081 20 C -0.116 4.116 21 C -0.132 4.132 22 C -0.130 4.130 23 C -0.128 4.128 24 C -0.125 4.125 25 H 0.106 0.894 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.271 0.729 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.118 0.882 42 H 0.133 0.867 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.497 16.955 4.570 26.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.165 4.165 3 C -0.173 4.173 4 C -0.042 4.042 5 N -0.248 5.248 6 C -0.066 4.066 7 C -0.115 4.115 8 C -0.234 4.234 9 S 0.030 5.970 10 C -0.683 4.683 11 H 0.090 0.910 12 C -0.191 4.191 13 N -0.544 5.544 14 Si 0.816 3.184 15 H -0.186 1.186 16 H -0.197 1.197 17 H -0.196 1.196 18 C -0.045 4.045 19 C -0.082 4.082 20 C -0.135 4.135 21 C -0.149 4.149 22 C -0.148 4.148 23 C -0.146 4.146 24 C -0.144 4.144 25 H 0.124 0.876 26 H 0.103 0.897 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.136 0.864 42 H 0.150 0.850 43 H 0.156 0.844 44 H 0.158 0.842 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 20.817 15.568 5.472 26.564 hybrid contribution -1.691 1.057 -1.618 2.568 sum 19.126 16.625 3.854 25.633 Atomic orbital electron populations 1.23878 0.95769 1.01986 1.00758 1.22493 0.95833 0.97470 1.00744 1.21063 1.00334 0.93668 1.02277 1.21362 0.99562 0.92821 0.90493 1.62272 1.11949 1.48518 1.02060 1.22131 0.90595 0.96811 0.97093 1.21085 0.93974 0.98611 0.97865 1.23128 0.99192 0.99284 1.01774 1.84671 1.31584 1.34866 1.45884 1.23058 1.13017 1.15355 1.16906 0.90996 1.26081 1.00284 0.93972 0.98751 1.70169 1.35020 1.13772 1.35485 0.84963 0.77153 0.78647 0.77588 1.18642 1.19661 1.19637 1.21291 0.88753 0.95458 0.99047 1.19828 0.95180 0.96619 0.96526 1.21196 0.94556 0.97231 1.00498 1.21400 0.96038 1.00199 0.97310 1.21440 1.00723 0.96370 0.96278 1.21416 0.94370 0.98384 1.00443 1.21362 0.96602 1.00268 0.96121 0.87559 0.89740 0.91016 0.91034 0.90783 0.91457 0.89524 0.93224 0.90635 0.92039 0.92339 0.92104 0.92059 0.91990 0.91372 0.90251 0.86360 0.84950 0.84393 0.84248 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.13 12.10 67.77 0.82 -3.31 16 2 C -0.16 -3.24 4.23 -16.50 -0.07 -3.31 16 3 C -0.12 -1.69 8.58 71.24 0.61 -1.08 16 4 C 0.08 1.90 5.26 85.56 0.45 2.35 16 5 N -0.53 -12.38 4.58 -905.39 -4.15 -16.53 16 6 C 0.06 1.66 4.64 86.30 0.40 2.06 16 7 C -0.08 -2.56 5.14 30.59 0.16 -2.41 16 8 C -0.08 -3.47 5.67 71.98 0.41 -3.06 16 9 S -0.20 -10.82 21.44 -56.49 -1.21 -12.03 16 10 C -0.54 -31.42 9.50 67.95 0.65 -30.78 16 11 H 0.07 4.07 7.80 -2.91 -0.02 4.05 16 12 C 0.01 0.80 5.49 84.86 0.47 1.27 16 13 N -0.91 -55.58 13.22 21.65 0.29 -55.29 16 14 Si 0.99 44.47 29.55 68.60 2.03 46.50 16 15 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 16 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 18 C 0.08 1.58 5.01 85.56 0.43 2.01 16 19 C -0.08 -1.58 5.05 -19.86 -0.10 -1.68 16 20 C -0.12 -2.34 9.72 22.27 0.22 -2.13 16 21 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 22 C -0.13 -2.02 10.05 22.27 0.22 -1.79 16 23 C -0.13 -1.95 10.05 22.27 0.22 -1.72 16 24 C -0.13 -2.10 8.50 22.27 0.19 -1.91 16 25 H 0.11 2.08 8.05 -2.91 -0.02 2.05 16 26 H 0.08 2.24 7.20 -2.91 -0.02 2.22 16 27 H 0.07 0.98 6.87 -2.39 -0.02 0.96 16 28 H 0.07 0.93 8.10 -2.39 -0.02 0.91 16 29 H 0.07 0.90 5.51 -2.39 -0.01 0.89 16 30 H 0.07 1.74 6.75 -2.39 -0.02 1.72 16 31 H 0.09 1.79 6.48 -2.39 -0.02 1.77 16 32 H 0.05 1.28 5.50 -2.39 -0.01 1.27 16 33 H 0.08 1.93 7.69 -2.39 -0.02 1.91 16 34 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.06 2.02 6.22 -2.39 -0.01 2.00 16 36 H 0.06 2.45 8.14 -2.40 -0.02 2.43 16 37 H 0.06 2.48 8.14 -2.39 -0.02 2.47 16 38 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 39 H 0.07 1.17 4.27 -2.39 -0.01 1.16 16 40 H 0.08 1.53 7.62 -2.39 -0.02 1.51 16 41 H 0.12 2.36 8.06 -2.91 -0.02 2.34 16 42 H 0.13 1.86 8.06 -2.91 -0.02 1.84 16 43 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 44 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 45 H 0.13 1.78 5.52 -2.91 -0.02 1.77 16 Total: -1.00 -67.62 367.67 3.21 -64.42 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.96 Total: 20.50 kcal Atomic # 6 Polarization: -52.86 SS G_CDS: 5.29 Total: -47.56 kcal Atomic # 7 Polarization: -67.96 SS G_CDS: -3.86 Total: -71.83 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: -10.82 SS G_CDS: -1.21 Total: -12.03 kcal Total: -67.62 3.21 -64.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279373515.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.109 kcal (2) G-P(sol) polarization free energy of solvation -67.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds