Wall clock time and date at job start Tue Mar 31 2020 09:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 C 1.50700 * 109.46878 * 180.02562 * 15 13 12 17 17 C 1.38229 * 120.00095 * 269.72415 * 16 15 13 18 18 C 1.38235 * 120.00117 * 179.76824 * 17 16 15 19 19 C 1.38236 * 119.99891 * 0.50670 * 18 17 16 20 20 Si 1.86798 * 120.00117 * 179.72308 * 19 18 17 21 21 C 1.86292 * 109.47242 * 270.02285 * 20 19 18 22 22 C 1.86302 * 109.47025 * 30.02617 * 20 19 18 23 23 C 1.86302 * 109.47167 * 150.02056 * 20 19 18 24 24 C 1.38233 * 119.99875 * 359.74457 * 19 18 17 25 25 C 1.38233 * 119.99978 * 0.02562 * 24 19 18 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 31 31 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 32 32 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 33 33 H 1.08003 * 120.00255 * 359.97438 * 17 16 15 34 34 H 1.07997 * 119.99997 * 180.23013 * 18 17 16 35 35 H 1.08997 * 109.47490 * 60.00296 * 21 20 19 36 36 H 1.09008 * 109.47341 * 179.97438 * 21 20 19 37 37 H 1.09001 * 109.47180 * 299.99659 * 21 20 19 38 38 H 1.08996 * 109.47514 * 59.99529 * 22 20 19 39 39 H 1.09000 * 109.47266 * 180.02562 * 22 20 19 40 40 H 1.09005 * 109.46725 * 299.99456 * 22 20 19 41 41 H 1.09003 * 109.46681 * 60.00187 * 23 20 19 42 42 H 1.09000 * 109.47469 * 180.02562 * 23 20 19 43 43 H 1.09006 * 109.46907 * 300.00286 * 23 20 19 44 44 H 1.08006 * 120.00156 * 179.97438 * 24 19 18 45 45 H 1.08007 * 119.99669 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 6 2.6998 0.2399 4.7413 17 6 3.8488 0.9698 4.9818 18 6 3.8930 1.8614 6.0372 19 6 2.7917 2.0155 6.8584 20 14 2.8541 3.2148 8.2892 21 6 3.4758 2.3358 9.8096 22 6 4.0026 4.6208 7.8714 23 6 1.1459 3.8839 8.6136 24 6 1.6445 1.2818 6.6210 25 6 1.5987 0.3937 5.5627 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7088 1.1611 -3.4845 30 1 2.2490 -1.6316 1.1527 31 1 1.9776 -1.5506 3.8326 32 1 3.6492 -1.1202 3.3980 33 1 4.7109 0.8458 4.3432 34 1 4.7894 2.4344 6.2229 35 1 4.4752 1.9444 9.6199 36 1 3.5126 3.0358 10.6445 37 1 2.8037 1.5132 10.0540 38 1 3.6389 5.1351 6.9819 39 1 4.0394 5.3204 8.7065 40 1 5.0021 4.2294 7.6817 41 1 0.4738 3.0612 8.8580 42 1 1.1823 4.5840 9.4482 43 1 0.7821 4.3982 7.7240 44 1 0.7842 1.4019 7.2628 45 1 0.7024 -0.1799 5.3776 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283155581.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:18 Heat of formation + Delta-G solvation = -66.080955 kcal Electronic energy + Delta-G solvation = -21924.968767 eV Core-core repulsion = 18756.616150 eV Total energy + Delta-G solvation = -3168.352617 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.155 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.45668 -38.15494 -34.76862 -32.59197 -32.20675 -30.76930 -29.20434 -28.78353 -27.69704 -27.67377 -26.73177 -25.23232 -22.36306 -21.85346 -20.52492 -19.33099 -17.15232 -16.38037 -15.67393 -15.29100 -15.17303 -14.80431 -14.11688 -13.91320 -13.49853 -13.34619 -13.32682 -13.15251 -13.07196 -13.03228 -12.63352 -12.50763 -12.38116 -12.35910 -12.21498 -11.91623 -11.73926 -11.51980 -11.06976 -10.94393 -10.82244 -10.67887 -10.31296 -10.24813 -10.22257 -10.13353 -9.86013 -9.05802 -9.03810 -8.65707 -8.54105 -8.38675 -7.86929 -6.11144 -4.20601 1.41402 1.66932 2.57373 2.64173 2.77762 3.25710 3.30916 3.32062 3.36247 3.45873 3.92303 4.27228 4.48991 4.96419 5.01962 5.19200 5.20761 5.40694 5.42078 5.46050 5.46801 5.49278 5.50725 5.50898 5.58394 5.70020 5.73205 5.82531 6.13603 6.19528 6.24357 6.26744 6.28091 6.57129 6.66958 6.83555 6.84461 6.98747 7.17427 7.25963 7.49657 7.58814 7.71370 7.93707 8.16885 8.70364 8.80276 9.18253 9.47216 10.94774 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.030722 B = 0.002481 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.167892 B =11283.464386 C =11350.508977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.712 5.712 13 C 0.502 3.498 14 O -0.547 6.547 15 C -0.110 4.110 16 C -0.042 4.042 17 C -0.118 4.118 18 C -0.089 4.089 19 C -0.379 4.379 20 Si 1.057 2.943 21 C -0.446 4.446 22 C -0.448 4.448 23 C -0.448 4.448 24 C -0.089 4.089 25 C -0.119 4.119 26 H 0.025 0.975 27 H 0.014 0.986 28 H 0.089 0.911 29 H 0.265 0.735 30 H 0.388 0.612 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.116 0.884 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.392 0.907 22.990 23.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.360 5.360 13 C 0.286 3.714 14 O -0.425 6.425 15 C -0.151 4.151 16 C -0.042 4.042 17 C -0.136 4.136 18 C -0.107 4.107 19 C -0.421 4.421 20 Si 1.249 2.751 21 C -0.553 4.553 22 C -0.556 4.556 23 C -0.556 4.556 24 C -0.107 4.107 25 C -0.137 4.137 26 H 0.045 0.955 27 H 0.033 0.967 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.220 0.780 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.133 0.867 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.083 1.847 22.796 23.232 hybrid contribution 0.348 -1.089 -1.229 1.679 sum 4.431 0.758 21.567 22.030 Atomic orbital electron populations 1.22073 0.98568 0.99022 1.00853 1.18710 0.90962 0.93955 0.80053 0.93487 1.21192 1.32464 1.13208 0.90384 0.92156 1.24901 0.94833 0.94970 0.99064 1.69899 1.35815 1.22447 1.23958 0.86502 0.79150 0.79574 0.81820 1.21130 1.20190 1.20169 1.46532 1.65418 1.13508 1.10560 1.20290 0.78972 0.87626 0.84474 1.90678 1.50763 1.16017 1.85047 1.20800 1.03565 0.98071 0.92615 1.19374 0.94009 0.96483 0.94348 1.21048 0.97808 0.96953 0.97831 1.20936 0.98064 0.96963 0.94699 1.27195 0.95474 1.08474 1.10980 0.78164 0.67094 0.65387 0.64471 1.26106 1.06319 1.07982 1.14929 1.26124 1.10569 1.13592 1.05306 1.26124 1.18151 1.06429 1.04878 1.20931 0.97494 0.95404 0.96865 1.21037 0.97489 0.99484 0.95660 0.95534 0.96711 0.89197 0.92530 0.77991 0.88657 0.88587 0.86651 0.86634 0.91259 0.91424 0.91261 0.90939 0.91368 0.91253 0.91259 0.91365 0.90948 0.86650 0.86710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.38 16 2 C 0.26 6.87 2.56 -69.09 -0.18 6.69 16 3 H 0.05 1.41 7.58 -51.92 -0.39 1.02 16 4 C -0.53 -14.31 8.73 -34.44 -0.30 -14.61 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.22 11.32 55.43 0.63 -24.60 16 8 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.71 -15.00 5.07 -54.93 -0.28 -15.28 16 13 C 0.50 10.18 7.79 -10.98 -0.09 10.09 16 14 O -0.55 -13.51 15.70 5.56 0.09 -13.43 16 15 C -0.11 -1.62 5.83 -29.03 -0.17 -1.79 16 16 C -0.04 -0.63 4.37 -104.63 -0.46 -1.09 16 17 C -0.12 -1.71 9.70 -39.59 -0.38 -2.09 16 18 C -0.09 -1.11 9.29 -39.58 -0.37 -1.48 16 19 C -0.38 -4.30 4.59 -39.58 -0.18 -4.48 16 20 Si 1.06 7.58 12.32 -169.99 -2.09 5.48 16 21 C -0.45 -3.05 8.65 101.05 0.87 -2.17 16 22 C -0.45 -3.40 8.53 101.05 0.86 -2.54 16 23 C -0.45 -3.38 8.53 101.05 0.86 -2.52 16 24 C -0.09 -1.11 9.29 -39.59 -0.37 -1.47 16 25 C -0.12 -1.70 9.70 -39.58 -0.38 -2.08 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.39 6.96 8.54 -40.82 -0.35 6.62 16 31 H 0.10 1.17 8.08 -51.93 -0.42 0.75 16 32 H 0.10 1.19 8.08 -51.93 -0.42 0.77 16 33 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 34 H 0.12 1.15 7.43 -52.49 -0.39 0.76 16 35 H 0.07 0.48 7.96 -51.93 -0.41 0.06 16 36 H 0.07 0.40 7.96 -51.92 -0.41 -0.01 16 37 H 0.07 0.48 7.96 -51.93 -0.41 0.06 16 38 H 0.07 0.61 7.96 -51.93 -0.41 0.20 16 39 H 0.07 0.44 7.96 -51.93 -0.41 0.03 16 40 H 0.07 0.50 7.69 -51.93 -0.40 0.10 16 41 H 0.07 0.50 7.69 -51.93 -0.40 0.10 16 42 H 0.07 0.44 7.96 -51.93 -0.41 0.03 16 43 H 0.07 0.61 7.96 -51.93 -0.41 0.19 16 44 H 0.12 1.14 7.43 -52.48 -0.39 0.75 16 45 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -33.01 380.18 -8.58 -41.59 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -7.60 Total: 5.99 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: -0.03 Total: -21.24 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.35 Total: -39.87 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.09 Total: -13.43 kcal Atomic # 14 Polarization: 28.35 SS G_CDS: -7.12 Total: 21.24 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.01 -8.58 -41.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283155581.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.489 kcal (2) G-P(sol) polarization free energy of solvation -33.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds