Wall clock time and date at job start Tue Mar 31 2020 09:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47385 * 2 1 4 4 C 1.50702 * 109.46686 * 120.00192 * 2 1 3 5 5 H 1.08007 * 119.99981 * 114.47702 * 4 2 1 6 6 C 1.37872 * 120.00181 * 294.48189 * 4 2 1 7 7 N 1.31507 * 120.00188 * 164.58940 * 6 4 2 8 8 Si 1.86797 * 119.99894 * 344.86064 * 6 4 2 9 9 H 1.48501 * 109.47054 * 269.72685 * 8 6 4 10 10 H 1.48506 * 109.47355 * 29.72399 * 8 6 4 11 11 H 1.48500 * 109.47516 * 149.72369 * 8 6 4 12 12 N 1.46503 * 109.46991 * 239.99842 * 2 1 3 13 13 C 1.34774 * 120.00000 * 85.00701 * 12 2 1 14 14 O 1.21281 * 119.99791 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00282 * 179.97438 * 13 12 2 16 16 C 1.50696 * 109.47260 * 179.97438 * 15 13 12 17 17 C 1.38232 * 120.00023 * 269.72275 * 16 15 13 18 18 C 1.38233 * 120.00095 * 179.76430 * 17 16 15 19 19 C 1.38239 * 119.99727 * 0.51210 * 18 17 16 20 20 Si 1.86801 * 119.99911 * 179.71868 * 19 18 17 21 21 C 1.86291 * 109.47431 * 270.02420 * 20 19 18 22 22 C 1.86301 * 109.47014 * 30.02691 * 20 19 18 23 23 C 1.86304 * 109.46881 * 150.02238 * 20 19 18 24 24 C 1.38234 * 120.00061 * 359.74693 * 19 18 17 25 25 C 1.38232 * 119.99950 * 90.00511 * 16 15 13 26 26 H 1.08992 * 109.47288 * 173.53991 * 1 2 3 27 27 H 1.08997 * 109.47143 * 293.55201 * 1 2 3 28 28 H 1.09005 * 109.46269 * 53.54439 * 1 2 3 29 29 H 0.97004 * 120.00365 * 355.18112 * 7 6 4 30 30 H 0.97002 * 119.99993 * 265.00302 * 12 2 1 31 31 H 1.09001 * 109.47433 * 300.00072 * 15 13 12 32 32 H 1.09001 * 109.47090 * 59.99525 * 15 13 12 33 33 H 1.07998 * 120.00090 * 0.02562 * 17 16 15 34 34 H 1.08002 * 120.00585 * 180.23620 * 18 17 16 35 35 H 1.09003 * 109.47145 * 60.00288 * 21 20 19 36 36 H 1.09008 * 109.47396 * 180.02562 * 21 20 19 37 37 H 1.08999 * 109.47301 * 300.00323 * 21 20 19 38 38 H 1.08999 * 109.47185 * 59.99736 * 22 20 19 39 39 H 1.08998 * 109.46947 * 179.97438 * 22 20 19 40 40 H 1.08993 * 109.47128 * 299.99367 * 22 20 19 41 41 H 1.08999 * 109.46741 * 60.00357 * 23 20 19 42 42 H 1.08999 * 109.47351 * 179.97438 * 23 20 19 43 43 H 1.08999 * 109.47365 * 300.00294 * 23 20 19 44 44 H 1.08002 * 120.00190 * 179.97438 * 24 19 18 45 45 H 1.08000 * 120.00352 * 359.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5776 -1.6377 1.1339 6 6 1.7955 -0.1769 2.4795 7 7 1.9543 -0.9200 3.5529 8 14 1.2419 1.5993 2.6468 9 1 2.4316 2.4785 2.7762 10 1 0.4655 1.9913 1.4430 11 1 0.3884 1.7403 3.8538 12 7 2.0183 -0.6907 -1.1962 13 6 2.1472 -0.0183 -2.3571 14 8 1.8593 1.1586 -2.4114 15 6 2.6500 -0.7285 -3.5874 16 6 2.7001 0.2396 -4.7412 17 6 1.6009 0.3896 -5.5659 18 6 1.6452 1.2812 -6.6212 19 6 2.7924 2.0152 -6.8583 20 14 2.8550 3.2144 -8.2892 21 6 3.4766 2.3354 -9.8095 22 6 1.1469 3.8837 -8.6136 23 6 4.0037 4.6203 -7.8713 24 6 3.8935 1.8613 -6.0368 25 6 3.8473 0.9735 -4.9783 26 1 -0.3633 -1.0211 -0.1156 27 1 -0.3633 0.4106 0.9420 28 1 -0.3632 0.6107 -0.8266 29 1 2.1697 -1.8615 3.4635 30 1 2.2490 -1.6319 -1.1526 31 1 3.6493 -1.1205 -3.3979 32 1 1.9778 -1.5508 -3.8325 33 1 0.7061 -0.1868 -5.3831 34 1 0.7851 1.4012 -7.2633 35 1 2.8045 1.5128 -10.0540 36 1 3.5136 3.0353 -10.6444 37 1 4.4760 1.9438 -9.6196 38 1 0.7831 4.3980 -7.7241 39 1 1.1834 4.5837 -9.4483 40 1 0.4748 3.0612 -8.8581 41 1 5.0031 4.2287 -7.6815 42 1 4.0406 5.3199 -8.7064 43 1 3.6400 5.1347 -6.9818 44 1 4.7899 2.4344 -6.2222 45 1 4.7076 0.8533 -4.3365 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283155586.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:21 Heat of formation + Delta-G solvation = -65.252244 kcal Electronic energy + Delta-G solvation = -22016.098829 eV Core-core repulsion = 18847.782147 eV Total energy + Delta-G solvation = -3168.316682 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.155 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.58473 -38.30231 -34.96235 -32.69237 -32.31404 -30.84071 -29.81238 -28.89096 -27.74124 -27.72377 -26.94483 -24.79804 -22.43534 -21.85283 -20.44122 -19.50557 -17.77908 -16.52167 -16.25214 -15.42888 -15.23587 -14.80302 -14.09918 -13.73996 -13.54531 -13.40685 -13.38454 -13.23876 -13.12035 -13.05313 -12.67973 -12.66769 -12.55811 -12.40636 -12.32930 -12.24203 -11.94637 -11.76214 -11.50193 -11.30651 -10.88222 -10.54567 -10.29853 -10.18309 -10.12158 -9.92501 -9.66200 -9.23114 -9.02029 -8.72892 -8.48642 -8.41116 -8.12830 -6.56939 -4.22133 1.33934 1.59735 2.51936 2.59172 2.72421 3.28414 3.30981 3.41607 3.45378 3.60317 3.82758 4.25464 4.44111 4.86947 4.94323 5.12385 5.17897 5.36512 5.37474 5.41588 5.41824 5.42202 5.44318 5.45599 5.49036 5.59373 5.61895 5.75332 6.08952 6.12178 6.19778 6.20576 6.22079 6.39811 6.49489 6.55107 6.60166 6.68341 6.75677 6.97452 7.18592 7.30080 7.41950 7.67519 8.23901 8.50354 8.71182 9.01632 9.46671 10.82319 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.026173 B = 0.002721 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.528547 B =10286.473951 C =10587.353569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.241 3.759 3 H 0.042 0.958 4 C -0.616 4.616 5 H 0.061 0.939 6 C 0.040 3.960 7 N -0.900 5.900 8 Si 1.039 2.961 9 H -0.284 1.284 10 H -0.267 1.267 11 H -0.284 1.284 12 N -0.705 5.705 13 C 0.503 3.497 14 O -0.548 6.548 15 C -0.109 4.109 16 C -0.043 4.043 17 C -0.119 4.119 18 C -0.089 4.089 19 C -0.378 4.378 20 Si 1.057 2.943 21 C -0.446 4.446 22 C -0.448 4.448 23 C -0.448 4.448 24 C -0.088 4.088 25 C -0.118 4.118 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.029 0.971 29 H 0.269 0.731 30 H 0.392 0.608 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.116 0.884 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.223 4.664 -26.176 26.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.138 3.862 3 H 0.060 0.940 4 C -0.654 4.654 5 H 0.079 0.921 6 C -0.167 4.167 7 N -0.533 5.533 8 Si 0.866 3.134 9 H -0.210 1.210 10 H -0.192 1.192 11 H -0.210 1.210 12 N -0.354 5.354 13 C 0.288 3.712 14 O -0.426 6.426 15 C -0.150 4.150 16 C -0.044 4.044 17 C -0.137 4.137 18 C -0.107 4.107 19 C -0.420 4.420 20 Si 1.249 2.751 21 C -0.554 4.554 22 C -0.556 4.556 23 C -0.556 4.556 24 C -0.106 4.106 25 C -0.136 4.136 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.225 0.775 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.134 0.866 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.647 6.631 -25.009 25.925 hybrid contribution 0.487 -1.960 -0.715 2.143 sum 2.134 4.670 -25.724 26.231 Atomic orbital electron populations 1.22437 0.99062 0.99779 0.99961 1.19037 0.90423 0.94251 0.82491 0.94048 1.22106 1.41059 1.11147 0.91071 0.92060 1.25682 0.93910 1.05442 0.91637 1.70826 1.43477 1.08289 1.30694 0.84181 0.77581 0.75347 0.76326 1.21041 1.19218 1.20967 1.46298 1.65393 1.13696 1.09975 1.20364 0.78749 0.87617 0.84505 1.90669 1.50879 1.15985 1.85114 1.20776 1.03699 0.98089 0.92394 1.19358 0.94108 0.96521 0.94400 1.21031 0.97479 0.99454 0.95701 1.20937 0.97522 0.95360 0.96866 1.27216 0.95430 1.08446 1.10953 0.78170 0.67115 0.65376 0.64464 1.26106 1.06335 1.07993 1.14922 1.26120 1.18125 1.06442 1.04886 1.26124 1.10573 1.13586 1.05312 1.20946 0.98080 0.96980 0.94633 1.21053 0.97793 0.96911 0.97822 0.93868 0.92493 0.95203 0.92083 0.77493 0.88433 0.88530 0.86716 0.86611 0.91254 0.91388 0.91243 0.90972 0.91326 0.91256 0.91238 0.91331 0.90959 0.86577 0.86623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 8.76 37.16 0.33 -3.22 16 2 C 0.24 5.90 2.11 -69.08 -0.15 5.75 16 3 H 0.04 1.11 6.21 -51.93 -0.32 0.78 16 4 C -0.62 -16.81 9.02 -34.44 -0.31 -17.12 16 5 H 0.06 1.74 7.96 -52.48 -0.42 1.32 16 6 C 0.04 1.12 5.33 -17.82 -0.09 1.03 16 7 N -0.90 -26.99 13.69 55.43 0.76 -26.23 16 8 Si 1.04 25.35 26.17 -169.99 -4.45 20.90 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.27 -6.21 5.53 56.52 0.31 -5.89 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 12 N -0.71 -14.39 5.07 -54.93 -0.28 -14.67 16 13 C 0.50 9.74 7.79 -10.99 -0.09 9.65 16 14 O -0.55 -12.79 15.70 5.56 0.09 -12.71 16 15 C -0.11 -1.54 5.83 -29.04 -0.17 -1.71 16 16 C -0.04 -0.63 4.37 -104.63 -0.46 -1.09 16 17 C -0.12 -1.62 9.70 -39.59 -0.38 -2.00 16 18 C -0.09 -1.05 9.29 -39.58 -0.37 -1.42 16 19 C -0.38 -4.09 4.59 -39.58 -0.18 -4.27 16 20 Si 1.06 7.12 12.32 -169.99 -2.09 5.02 16 21 C -0.45 -2.90 8.65 101.05 0.87 -2.03 16 22 C -0.45 -3.17 8.53 101.05 0.86 -2.31 16 23 C -0.45 -3.21 8.53 101.05 0.86 -2.35 16 24 C -0.09 -1.06 9.29 -39.58 -0.37 -1.43 16 25 C -0.12 -1.64 9.70 -39.58 -0.38 -2.02 16 26 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 1.32 5.06 -51.93 -0.26 1.06 16 28 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.27 7.97 8.73 -40.82 -0.36 7.61 16 30 H 0.39 7.02 8.53 -40.82 -0.35 6.67 16 31 H 0.10 1.18 8.09 -51.93 -0.42 0.76 16 32 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 33 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 34 H 0.12 1.07 7.43 -52.49 -0.39 0.68 16 35 H 0.07 0.45 7.96 -51.93 -0.41 0.04 16 36 H 0.07 0.38 7.96 -51.92 -0.41 -0.03 16 37 H 0.07 0.46 7.96 -51.93 -0.41 0.04 16 38 H 0.07 0.57 7.96 -51.93 -0.41 0.15 16 39 H 0.07 0.42 7.96 -51.93 -0.41 0.00 16 40 H 0.07 0.47 7.69 -51.93 -0.40 0.07 16 41 H 0.07 0.48 7.69 -51.93 -0.40 0.08 16 42 H 0.07 0.42 7.96 -51.93 -0.41 0.01 16 43 H 0.07 0.58 7.96 -51.93 -0.41 0.16 16 44 H 0.12 1.10 7.43 -52.49 -0.39 0.71 16 45 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 375.23 15.07 5.65 5.65 Total: -1.00 -33.70 375.23 -7.94 -41.64 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -7.60 Total: 4.92 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: -0.03 Total: -24.54 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.48 Total: -40.90 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.71 kcal Atomic # 14 Polarization: 32.47 SS G_CDS: -6.54 Total: 25.93 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.70 -7.94 -41.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283155586.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.612 kcal (2) G-P(sol) polarization free energy of solvation -33.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds