Wall clock time and date at job start Tue Mar 31 2020 09:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47385 * 2 1 4 4 C 1.50702 * 109.46686 * 120.00192 * 2 1 3 5 5 H 1.08007 * 119.99981 * 114.47702 * 4 2 1 6 6 C 1.37872 * 120.00181 * 294.48189 * 4 2 1 7 7 N 1.31507 * 120.00188 * 164.58940 * 6 4 2 8 8 Si 1.86797 * 119.99894 * 344.86064 * 6 4 2 9 9 H 1.48501 * 109.47054 * 269.72685 * 8 6 4 10 10 H 1.48506 * 109.47355 * 29.72399 * 8 6 4 11 11 H 1.48500 * 109.47516 * 149.72369 * 8 6 4 12 12 N 1.46503 * 109.46991 * 239.99842 * 2 1 3 13 13 C 1.34774 * 120.00000 * 85.00701 * 12 2 1 14 14 O 1.21281 * 119.99791 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00282 * 179.97438 * 13 12 2 16 16 C 1.50696 * 109.47260 * 179.97438 * 15 13 12 17 17 C 1.38232 * 120.00023 * 269.72275 * 16 15 13 18 18 C 1.38233 * 120.00095 * 179.76430 * 17 16 15 19 19 C 1.38239 * 119.99727 * 0.51210 * 18 17 16 20 20 Si 1.86801 * 119.99911 * 179.71868 * 19 18 17 21 21 C 1.86291 * 109.47431 * 270.02420 * 20 19 18 22 22 C 1.86301 * 109.47014 * 30.02691 * 20 19 18 23 23 C 1.86304 * 109.46881 * 150.02238 * 20 19 18 24 24 C 1.38234 * 120.00061 * 359.74693 * 19 18 17 25 25 C 1.38232 * 119.99950 * 90.00511 * 16 15 13 26 26 H 1.08992 * 109.47288 * 173.53991 * 1 2 3 27 27 H 1.08997 * 109.47143 * 293.55201 * 1 2 3 28 28 H 1.09005 * 109.46269 * 53.54439 * 1 2 3 29 29 H 0.97004 * 120.00365 * 355.18112 * 7 6 4 30 30 H 0.97002 * 119.99993 * 265.00302 * 12 2 1 31 31 H 1.09001 * 109.47433 * 300.00072 * 15 13 12 32 32 H 1.09001 * 109.47090 * 59.99525 * 15 13 12 33 33 H 1.07998 * 120.00090 * 0.02562 * 17 16 15 34 34 H 1.08002 * 120.00585 * 180.23620 * 18 17 16 35 35 H 1.09003 * 109.47145 * 60.00288 * 21 20 19 36 36 H 1.09008 * 109.47396 * 180.02562 * 21 20 19 37 37 H 1.08999 * 109.47301 * 300.00323 * 21 20 19 38 38 H 1.08999 * 109.47185 * 59.99736 * 22 20 19 39 39 H 1.08998 * 109.46947 * 179.97438 * 22 20 19 40 40 H 1.08993 * 109.47128 * 299.99367 * 22 20 19 41 41 H 1.08999 * 109.46741 * 60.00357 * 23 20 19 42 42 H 1.08999 * 109.47351 * 179.97438 * 23 20 19 43 43 H 1.08999 * 109.47365 * 300.00294 * 23 20 19 44 44 H 1.08002 * 120.00190 * 179.97438 * 24 19 18 45 45 H 1.08000 * 120.00352 * 359.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5776 -1.6377 1.1339 6 6 1.7955 -0.1769 2.4795 7 7 1.9543 -0.9200 3.5529 8 14 1.2419 1.5993 2.6468 9 1 2.4316 2.4785 2.7762 10 1 0.4655 1.9913 1.4430 11 1 0.3884 1.7403 3.8538 12 7 2.0183 -0.6907 -1.1962 13 6 2.1472 -0.0183 -2.3571 14 8 1.8593 1.1586 -2.4114 15 6 2.6500 -0.7285 -3.5874 16 6 2.7001 0.2396 -4.7412 17 6 1.6009 0.3896 -5.5659 18 6 1.6452 1.2812 -6.6212 19 6 2.7924 2.0152 -6.8583 20 14 2.8550 3.2144 -8.2892 21 6 3.4766 2.3354 -9.8095 22 6 1.1469 3.8837 -8.6136 23 6 4.0037 4.6203 -7.8713 24 6 3.8935 1.8613 -6.0368 25 6 3.8473 0.9735 -4.9783 26 1 -0.3633 -1.0211 -0.1156 27 1 -0.3633 0.4106 0.9420 28 1 -0.3632 0.6107 -0.8266 29 1 2.1697 -1.8615 3.4635 30 1 2.2490 -1.6319 -1.1526 31 1 3.6493 -1.1205 -3.3979 32 1 1.9778 -1.5508 -3.8325 33 1 0.7061 -0.1868 -5.3831 34 1 0.7851 1.4012 -7.2633 35 1 2.8045 1.5128 -10.0540 36 1 3.5136 3.0353 -10.6444 37 1 4.4760 1.9438 -9.6196 38 1 0.7831 4.3980 -7.7241 39 1 1.1834 4.5837 -9.4483 40 1 0.4748 3.0612 -8.8581 41 1 5.0031 4.2287 -7.6815 42 1 4.0406 5.3199 -8.7064 43 1 3.6400 5.1347 -6.9818 44 1 4.7899 2.4344 -6.2222 45 1 4.7076 0.8533 -4.3365 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283155586.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:20 Heat of formation + Delta-G solvation = -83.492723 kcal Electronic energy + Delta-G solvation = -22016.889795 eV Core-core repulsion = 18847.782147 eV Total energy + Delta-G solvation = -3169.107648 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.155 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.93821 -39.52530 -36.82972 -34.48716 -33.70400 -31.76285 -31.55516 -29.44313 -28.25799 -28.22365 -28.09653 -26.86701 -23.37227 -23.33430 -21.85617 -21.17716 -19.78161 -17.89618 -17.58106 -16.89981 -16.49738 -15.89333 -15.53342 -15.39996 -14.80230 -14.67528 -14.32584 -14.23455 -14.10105 -13.99619 -13.86013 -13.69970 -13.57354 -13.39222 -13.28526 -13.07465 -13.02823 -12.93028 -12.86420 -12.61284 -12.49590 -12.08158 -11.80297 -11.54865 -11.13547 -10.94777 -10.76284 -10.71457 -10.68472 -10.58959 -9.90416 -9.68951 -9.44991 -8.81366 -6.47305 0.40616 0.63405 1.45986 1.46829 1.68604 1.76196 1.90627 2.08062 2.16305 2.40810 2.52577 2.73558 2.98550 3.09378 3.76914 3.99148 4.13645 4.23554 4.41236 4.49001 4.57263 4.60216 4.69315 4.76334 4.80832 4.88968 4.89990 4.93070 4.93539 4.94528 4.96951 5.06342 5.17127 5.27166 5.40447 5.52630 5.62139 5.63435 5.64550 5.64600 5.72416 5.73921 5.76478 5.99040 6.27221 6.50146 6.84494 7.25620 7.44737 8.57045 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.026173 B = 0.002721 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.528547 B =10286.473951 C =10587.353569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.244 3.756 3 H 0.020 0.980 4 C -0.611 4.611 5 H 0.042 0.958 6 C -0.005 4.005 7 N -0.929 5.929 8 Si 1.073 2.927 9 H -0.277 1.277 10 H -0.252 1.252 11 H -0.277 1.277 12 N -0.706 5.706 13 C 0.502 3.498 14 O -0.589 6.589 15 C -0.096 4.096 16 C -0.071 4.071 17 C -0.138 4.138 18 C -0.100 4.100 19 C -0.391 4.391 20 Si 1.121 2.879 21 C -0.451 4.451 22 C -0.459 4.459 23 C -0.461 4.461 24 C -0.101 4.101 25 C -0.141 4.141 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.035 0.965 29 H 0.259 0.741 30 H 0.405 0.595 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.140 0.860 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.138 0.862 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.007 5.562 -28.906 29.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.139 3.861 3 H 0.038 0.962 4 C -0.649 4.649 5 H 0.060 0.940 6 C -0.206 4.206 7 N -0.564 5.564 8 Si 0.895 3.105 9 H -0.203 1.203 10 H -0.176 1.176 11 H -0.203 1.203 12 N -0.355 5.355 13 C 0.290 3.710 14 O -0.470 6.470 15 C -0.136 4.136 16 C -0.072 4.072 17 C -0.156 4.156 18 C -0.118 4.118 19 C -0.429 4.429 20 Si 1.308 2.692 21 C -0.558 4.558 22 C -0.567 4.567 23 C -0.568 4.568 24 C -0.119 4.119 25 C -0.159 4.159 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.240 0.760 31 H 0.137 0.863 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.158 0.842 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.079 0.921 44 H 0.155 0.845 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.441 7.475 -27.731 28.757 hybrid contribution 0.604 -2.260 0.056 2.340 sum 2.045 5.216 -27.674 28.236 Atomic orbital electron populations 1.22324 0.97744 1.00581 0.99956 1.18747 0.91353 0.93014 0.83009 0.96185 1.22263 1.39998 1.10296 0.92379 0.94009 1.26814 0.93820 1.08214 0.91707 1.70922 1.45834 1.08012 1.31583 0.83729 0.77863 0.71790 0.77132 1.20347 1.17577 1.20275 1.46160 1.65667 1.14285 1.09434 1.21210 0.77375 0.87185 0.85233 1.90641 1.52537 1.18020 1.85818 1.20740 1.05138 0.98185 0.89523 1.19501 0.94909 0.97637 0.95115 1.21303 0.97516 1.00311 0.96459 1.21349 0.98811 0.94902 0.96733 1.28230 0.94427 1.08358 1.11838 0.77298 0.66343 0.63304 0.62231 1.26127 1.06296 1.08290 1.15099 1.26240 1.18518 1.06927 1.04991 1.26266 1.10955 1.14233 1.05372 1.21330 0.99476 0.96763 0.94294 1.21302 0.97921 0.97788 0.98854 0.92801 0.92925 0.94609 0.93138 0.76049 0.86345 0.85837 0.86176 0.84237 0.91186 0.90088 0.91292 0.92015 0.90040 0.90843 0.90994 0.90041 0.92055 0.84465 0.86615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.64 8.76 71.98 0.63 -6.01 16 2 C 0.24 11.84 2.11 44.25 0.09 11.93 16 3 H 0.02 1.08 6.21 -2.39 -0.01 1.06 16 4 C -0.61 -33.60 9.02 25.60 0.23 -33.37 16 5 H 0.04 2.41 7.96 -2.91 -0.02 2.39 16 6 C 0.00 -0.28 5.33 84.65 0.45 0.17 16 7 N -0.93 -56.46 13.69 21.44 0.29 -56.17 16 8 Si 1.07 51.04 26.17 68.60 1.80 52.83 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 10 H -0.25 -11.25 5.53 99.48 0.55 -10.70 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 12 N -0.71 -28.41 5.07 -446.10 -2.26 -30.67 16 13 C 0.50 19.15 7.79 87.66 0.68 19.83 16 14 O -0.59 -27.51 15.70 -3.03 -0.05 -27.56 16 15 C -0.10 -2.60 5.83 29.10 0.17 -2.43 16 16 C -0.07 -2.03 4.37 -19.87 -0.09 -2.12 16 17 C -0.14 -3.65 9.70 22.27 0.22 -3.43 16 18 C -0.10 -2.23 9.29 22.27 0.21 -2.02 16 19 C -0.39 -7.83 4.59 22.27 0.10 -7.73 16 20 Si 1.12 12.27 12.32 68.60 0.85 13.12 16 21 C -0.45 -4.49 8.65 113.37 0.98 -3.51 16 22 C -0.46 -5.36 8.53 113.37 0.97 -4.39 16 23 C -0.46 -5.58 8.53 113.37 0.97 -4.62 16 24 C -0.10 -2.31 9.29 22.27 0.21 -2.10 16 25 C -0.14 -3.85 9.70 22.27 0.22 -3.64 16 26 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.05 2.38 5.06 -2.39 -0.01 2.37 16 28 H 0.03 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.26 15.75 8.73 -92.71 -0.81 14.94 16 30 H 0.40 14.16 8.53 -92.71 -0.79 13.37 16 31 H 0.12 2.67 8.09 -2.39 -0.02 2.65 16 32 H 0.12 2.63 8.08 -2.39 -0.02 2.61 16 33 H 0.12 2.89 8.06 -2.91 -0.02 2.86 16 34 H 0.14 2.30 7.43 -2.91 -0.02 2.28 16 35 H 0.07 0.71 7.96 -2.39 -0.02 0.69 16 36 H 0.08 0.63 7.96 -2.38 -0.02 0.61 16 37 H 0.07 0.72 7.96 -2.39 -0.02 0.70 16 38 H 0.06 0.86 7.96 -2.39 -0.02 0.84 16 39 H 0.08 0.75 7.96 -2.39 -0.02 0.73 16 40 H 0.07 0.80 7.69 -2.39 -0.02 0.78 16 41 H 0.07 0.83 7.69 -2.39 -0.02 0.81 16 42 H 0.08 0.78 7.96 -2.39 -0.02 0.76 16 43 H 0.06 0.88 7.96 -2.39 -0.02 0.87 16 44 H 0.14 2.40 7.43 -2.91 -0.02 2.38 16 45 H 0.12 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -73.06 375.23 6.64 -66.43 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: -0.02 Total: 25.47 kcal Atomic # 6 Polarization: -49.48 SS G_CDS: 6.03 Total: -43.44 kcal Atomic # 7 Polarization: -84.87 SS G_CDS: -1.97 Total: -86.84 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.05 Total: -27.56 kcal Atomic # 14 Polarization: 63.31 SS G_CDS: 2.64 Total: 65.95 kcal Total: -73.06 6.64 -66.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283155586.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.067 kcal (2) G-P(sol) polarization free energy of solvation -73.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds