Wall clock time and date at job start Tue Mar 31 2020 09:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08989 * 110.27515 * 2 1 4 4 C 1.54591 * 110.31190 * 237.90432 * 2 1 3 5 5 C 1.54932 * 102.92463 * 219.03064 * 4 2 1 6 6 H 1.09002 * 110.66658 * 278.98129 * 5 4 2 7 7 C 1.50705 * 110.66613 * 156.01639 * 5 4 2 8 8 C 1.38236 * 119.99897 * 283.43170 * 7 5 4 9 9 C 1.38232 * 119.99483 * 179.79248 * 8 7 5 10 10 C 1.38239 * 120.00161 * 0.46316 * 9 8 7 11 11 C 1.38228 * 119.99984 * 359.76864 * 10 9 8 12 12 C 1.38234 * 119.99530 * 103.71270 * 7 5 4 13 13 N 1.48533 * 103.22716 * 37.41609 * 5 4 2 14 14 C 1.46896 * 111.00312 * 200.28013 * 13 5 4 15 15 C 1.52995 * 109.47580 * 170.00089 * 14 13 5 16 16 C 1.52998 * 109.47709 * 180.02562 * 15 14 13 17 17 S 1.80995 * 109.47680 * 179.97438 * 16 15 14 18 18 C 1.76191 * 100.00429 * 179.97438 * 17 16 15 19 19 H 1.08007 * 120.00033 * 359.97438 * 18 17 16 20 20 C 1.38792 * 120.00246 * 180.02562 * 18 17 16 21 21 N 1.31627 * 120.00183 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99993 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47207 * 59.99946 * 22 20 18 24 24 H 1.48506 * 109.47182 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47455 * 299.99816 * 22 20 18 26 26 C 1.47904 * 105.82079 * 320.79507 * 13 5 4 27 27 H 1.09003 * 109.47216 * 182.08558 * 1 2 3 28 28 H 1.08995 * 109.47492 * 302.09762 * 1 2 3 29 29 H 1.09004 * 109.46806 * 62.09079 * 1 2 3 30 30 H 1.08999 * 110.71886 * 100.66739 * 4 2 1 31 31 H 1.09005 * 110.72562 * 337.39192 * 4 2 1 32 32 H 1.07995 * 119.99957 * 359.97438 * 8 7 5 33 33 H 1.08003 * 120.00088 * 180.25713 * 9 8 7 34 34 H 1.08002 * 119.99728 * 179.79673 * 10 9 8 35 35 H 1.08007 * 120.00199 * 180.02562 * 11 10 9 36 36 H 1.07994 * 120.00454 * 359.97159 * 12 7 5 37 37 H 1.09003 * 109.47320 * 289.99865 * 14 13 5 38 38 H 1.09001 * 109.46929 * 49.99989 * 14 13 5 39 39 H 1.09009 * 109.47016 * 300.00121 * 15 14 13 40 40 H 1.08999 * 109.47488 * 59.99344 * 15 14 13 41 41 H 1.09001 * 109.46527 * 300.00214 * 16 15 14 42 42 H 1.09002 * 109.46854 * 59.99236 * 16 15 14 43 43 H 0.97004 * 120.00435 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.91374 * 265.97833 * 26 13 5 45 45 H 1.09000 * 109.91957 * 144.68124 * 26 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0667 -0.7703 -1.2282 5 6 3.2870 -1.5322 -0.6533 6 1 4.1571 -0.8781 -0.5964 7 6 3.5935 -2.7508 -1.4854 8 6 2.8099 -3.8835 -1.3670 9 6 3.0884 -4.9997 -2.1333 10 6 4.1563 -4.9866 -3.0111 11 6 4.9427 -3.8556 -3.1260 12 6 4.6616 -2.7378 -2.3627 13 7 2.8345 -1.9221 0.7067 14 6 3.9794 -2.2234 1.5763 15 6 3.4970 -2.3756 3.0202 16 6 4.6895 -2.6888 3.9261 17 16 4.1189 -2.8682 5.6344 18 6 5.6502 -3.2153 6.4338 19 1 6.5623 -3.2604 5.8571 20 6 5.6843 -3.4317 7.8043 21 7 4.5725 -3.3782 8.5069 22 14 7.3077 -3.8003 8.6516 23 1 8.2431 -2.6658 8.4442 24 1 7.0752 -3.9900 10.1060 25 1 7.8956 -5.0376 8.0784 26 6 2.0665 -0.7680 1.2223 27 1 -0.3634 -1.0270 0.0374 28 1 -0.3634 0.5460 0.8705 29 1 -0.3633 0.4810 -0.9082 30 1 2.3775 -0.0789 -2.0114 31 1 1.3179 -1.4682 -1.6032 32 1 1.9784 -3.8952 -0.6779 33 1 2.4737 -5.8832 -2.0439 34 1 4.3758 -5.8598 -3.6075 35 1 5.7768 -3.8452 -3.8121 36 1 5.2762 -1.8544 -2.4522 37 1 4.4489 -3.1515 1.2504 38 1 4.7031 -1.4103 1.5189 39 1 3.0274 -1.4475 3.3462 40 1 2.7731 -3.1886 3.0777 41 1 5.1593 -3.6168 3.6002 42 1 5.4129 -1.8756 3.8685 43 1 4.5963 -3.5291 9.4648 44 1 2.7178 -0.1215 1.8104 45 1 1.2356 -1.1185 1.8346 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285648319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:57 Heat of formation + Delta-G solvation = 6.665223 kcal Electronic energy + Delta-G solvation = -22175.636401 eV Core-core repulsion = 19089.984718 eV Total energy + Delta-G solvation = -3085.651683 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.15236 -38.42560 -34.75790 -32.79684 -32.41078 -31.07596 -30.85991 -28.46060 -26.53128 -25.63392 -24.55232 -23.01983 -22.44687 -21.25985 -20.29468 -19.55661 -17.43217 -17.00753 -16.45973 -15.66321 -15.07552 -14.89561 -14.78816 -14.56754 -14.06800 -13.80025 -13.68805 -13.37351 -13.30692 -13.07157 -12.82237 -12.65775 -12.50067 -12.27075 -11.69553 -11.51113 -11.42846 -11.15182 -11.08567 -11.02364 -10.86366 -10.84662 -10.75879 -10.69692 -10.59249 -10.31741 -9.51346 -9.03275 -8.96501 -8.74401 -8.41772 -8.28097 -6.50378 -6.20719 -3.90772 1.26868 1.36779 3.22976 3.24551 3.28947 3.55586 3.68598 3.96969 4.24625 4.43590 4.55965 4.71156 4.83177 4.87571 4.93419 5.10279 5.15073 5.15778 5.24016 5.31590 5.34913 5.40141 5.45331 5.48018 5.53970 5.59707 5.66466 5.73752 5.77811 5.83493 5.90920 5.94044 5.96362 6.00189 6.04444 6.13713 6.19959 6.35529 6.39516 6.47810 6.54549 6.62466 6.77851 6.91404 6.98397 7.10664 7.62171 8.38436 9.25416 10.87451 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.015107 B = 0.003013 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.999848 B = 9290.921102 C =10581.812911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 H 0.073 0.927 4 C -0.108 4.108 5 C 0.101 3.899 6 H 0.059 0.941 7 C -0.069 4.069 8 C -0.087 4.087 9 C -0.125 4.125 10 C -0.125 4.125 11 C -0.125 4.125 12 C -0.118 4.118 13 N -0.507 5.507 14 C 0.053 3.947 15 C -0.096 4.096 16 C -0.112 4.112 17 S -0.132 6.132 18 C -0.517 4.517 19 H 0.071 0.929 20 C 0.071 3.929 21 N -0.870 5.870 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.038 3.962 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.132 0.868 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.075 0.925 38 H 0.032 0.968 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.267 0.733 44 H 0.049 0.951 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.020 3.848 -23.987 24.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 H 0.091 0.909 4 C -0.146 4.146 5 C -0.007 4.007 6 H 0.077 0.923 7 C -0.070 4.070 8 C -0.105 4.105 9 C -0.143 4.143 10 C -0.143 4.143 11 C -0.143 4.143 12 C -0.137 4.137 13 N -0.231 5.231 14 C -0.076 4.076 15 C -0.135 4.135 16 C -0.261 4.261 17 S 0.096 5.904 18 C -0.665 4.665 19 H 0.089 0.911 20 C -0.138 4.138 21 N -0.506 5.506 22 Si 0.744 3.256 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.089 4.089 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.150 0.850 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.093 0.907 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.466 3.449 -23.340 24.464 hybrid contribution 2.973 0.330 0.180 2.997 sum -3.493 3.779 -23.160 23.725 Atomic orbital electron populations 1.21811 0.94266 1.02240 1.01479 1.22026 0.96590 0.99000 0.94756 0.90892 1.22608 0.96641 0.98364 0.96944 1.21650 0.96998 0.92750 0.89295 0.92294 1.19632 0.95407 0.95271 0.96648 1.21088 0.99604 0.92035 0.97767 1.21214 0.97864 0.98541 0.96727 1.21133 0.95873 0.98106 0.99167 1.21048 0.99808 0.93542 0.99911 1.21002 0.97237 0.98453 0.96977 1.64719 1.21337 1.35949 1.01050 1.22346 0.91393 1.00693 0.93176 1.21335 0.97840 1.02654 0.91639 1.23225 0.99796 1.02486 1.00610 1.84596 1.16300 1.92812 0.96654 1.22654 0.93168 1.55560 0.95107 0.91064 1.25005 0.97523 0.94835 0.96395 1.70013 1.26486 1.46650 1.07437 0.86233 0.82236 0.79003 0.78111 1.19967 1.20811 1.19921 1.22986 0.98338 0.91206 0.96416 0.92091 0.92509 0.92873 0.91239 0.90371 0.85027 0.86231 0.86476 0.86401 0.86529 0.90695 0.94927 0.91613 0.90813 0.92146 0.92440 0.92274 0.93261 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.89 37.16 0.33 -0.82 16 2 C -0.10 -0.96 3.58 -89.26 -0.32 -1.28 16 3 H 0.07 0.63 8.14 -51.94 -0.42 0.21 16 4 C -0.11 -0.98 6.02 -24.88 -0.15 -1.13 16 5 C 0.10 1.09 2.49 -66.94 -0.17 0.93 16 6 H 0.06 0.65 7.76 -51.93 -0.40 0.24 16 7 C -0.07 -0.77 4.90 -104.62 -0.51 -1.28 16 8 C -0.09 -0.98 9.24 -39.58 -0.37 -1.35 16 9 C -0.13 -1.29 10.05 -39.58 -0.40 -1.69 16 10 C -0.12 -1.21 10.05 -39.58 -0.40 -1.60 16 11 C -0.13 -1.21 10.05 -39.58 -0.40 -1.60 16 12 C -0.12 -1.21 9.69 -39.58 -0.38 -1.60 16 13 N -0.51 -6.24 4.33 -223.99 -0.97 -7.21 16 14 C 0.05 0.76 4.85 -3.83 -0.02 0.74 16 15 C -0.10 -1.61 4.96 -26.73 -0.13 -1.75 16 16 C -0.11 -2.32 5.67 37.16 0.21 -2.11 16 17 S -0.13 -3.51 21.44 -107.50 -2.30 -5.81 16 18 C -0.52 -15.07 9.50 30.94 0.29 -14.77 16 19 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 20 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 21 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 22 Si 0.92 21.79 29.55 -169.99 -5.02 16.77 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 26 C 0.04 0.44 4.99 -2.75 -0.01 0.42 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.74 7.67 -51.93 -0.40 0.34 16 32 H 0.13 1.53 7.69 -52.49 -0.40 1.13 16 33 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 34 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 36 H 0.12 1.02 8.05 -52.49 -0.42 0.60 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.03 0.46 7.89 -51.93 -0.41 0.05 16 39 H 0.07 1.10 6.63 -51.92 -0.34 0.76 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.06 1.26 8.14 -51.92 -0.42 0.83 16 42 H 0.06 1.18 8.14 -51.91 -0.42 0.76 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.05 0.60 7.14 -51.93 -0.37 0.23 16 45 H 0.08 1.01 7.69 -51.93 -0.40 0.61 16 LS Contribution 374.36 15.07 5.64 5.64 Total: -1.00 -31.11 374.36 -12.21 -43.32 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.77 Total: -0.20 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: -2.52 Total: -26.95 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: -0.24 Total: -32.76 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -2.30 Total: -5.81 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.11 -12.21 -43.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285648319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.980 kcal (2) G-P(sol) polarization free energy of solvation -31.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds