Wall clock time and date at job start Tue Mar 31 2020 09:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08989 * 110.27515 * 2 1 4 4 C 1.54591 * 110.31190 * 237.90432 * 2 1 3 5 5 C 1.54932 * 102.92463 * 219.03064 * 4 2 1 6 6 H 1.09002 * 110.66658 * 278.98129 * 5 4 2 7 7 C 1.50705 * 110.66613 * 156.01639 * 5 4 2 8 8 C 1.38236 * 119.99897 * 283.43170 * 7 5 4 9 9 C 1.38232 * 119.99483 * 179.79248 * 8 7 5 10 10 C 1.38239 * 120.00161 * 0.46316 * 9 8 7 11 11 C 1.38228 * 119.99984 * 359.76864 * 10 9 8 12 12 C 1.38234 * 119.99530 * 103.71270 * 7 5 4 13 13 N 1.48533 * 103.22716 * 37.41609 * 5 4 2 14 14 C 1.46896 * 111.00312 * 200.28013 * 13 5 4 15 15 C 1.52995 * 109.47580 * 170.00089 * 14 13 5 16 16 C 1.52998 * 109.47709 * 180.02562 * 15 14 13 17 17 S 1.80995 * 109.47680 * 179.97438 * 16 15 14 18 18 C 1.76191 * 100.00429 * 179.97438 * 17 16 15 19 19 H 1.08007 * 120.00033 * 359.97438 * 18 17 16 20 20 C 1.38792 * 120.00246 * 180.02562 * 18 17 16 21 21 N 1.31627 * 120.00183 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99993 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47207 * 59.99946 * 22 20 18 24 24 H 1.48506 * 109.47182 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47455 * 299.99816 * 22 20 18 26 26 C 1.47904 * 105.82079 * 320.79507 * 13 5 4 27 27 H 1.09003 * 109.47216 * 182.08558 * 1 2 3 28 28 H 1.08995 * 109.47492 * 302.09762 * 1 2 3 29 29 H 1.09004 * 109.46806 * 62.09079 * 1 2 3 30 30 H 1.08999 * 110.71886 * 100.66739 * 4 2 1 31 31 H 1.09005 * 110.72562 * 337.39192 * 4 2 1 32 32 H 1.07995 * 119.99957 * 359.97438 * 8 7 5 33 33 H 1.08003 * 120.00088 * 180.25713 * 9 8 7 34 34 H 1.08002 * 119.99728 * 179.79673 * 10 9 8 35 35 H 1.08007 * 120.00199 * 180.02562 * 11 10 9 36 36 H 1.07994 * 120.00454 * 359.97159 * 12 7 5 37 37 H 1.09003 * 109.47320 * 289.99865 * 14 13 5 38 38 H 1.09001 * 109.46929 * 49.99989 * 14 13 5 39 39 H 1.09009 * 109.47016 * 300.00121 * 15 14 13 40 40 H 1.08999 * 109.47488 * 59.99344 * 15 14 13 41 41 H 1.09001 * 109.46527 * 300.00214 * 16 15 14 42 42 H 1.09002 * 109.46854 * 59.99236 * 16 15 14 43 43 H 0.97004 * 120.00435 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.91374 * 265.97833 * 26 13 5 45 45 H 1.09000 * 109.91957 * 144.68124 * 26 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0667 -0.7703 -1.2282 5 6 3.2870 -1.5322 -0.6533 6 1 4.1571 -0.8781 -0.5964 7 6 3.5935 -2.7508 -1.4854 8 6 2.8099 -3.8835 -1.3670 9 6 3.0884 -4.9997 -2.1333 10 6 4.1563 -4.9866 -3.0111 11 6 4.9427 -3.8556 -3.1260 12 6 4.6616 -2.7378 -2.3627 13 7 2.8345 -1.9221 0.7067 14 6 3.9794 -2.2234 1.5763 15 6 3.4970 -2.3756 3.0202 16 6 4.6895 -2.6888 3.9261 17 16 4.1189 -2.8682 5.6344 18 6 5.6502 -3.2153 6.4338 19 1 6.5623 -3.2604 5.8571 20 6 5.6843 -3.4317 7.8043 21 7 4.5725 -3.3782 8.5069 22 14 7.3077 -3.8003 8.6516 23 1 8.2431 -2.6658 8.4442 24 1 7.0752 -3.9900 10.1060 25 1 7.8956 -5.0376 8.0784 26 6 2.0665 -0.7680 1.2223 27 1 -0.3634 -1.0270 0.0374 28 1 -0.3634 0.5460 0.8705 29 1 -0.3633 0.4810 -0.9082 30 1 2.3775 -0.0789 -2.0114 31 1 1.3179 -1.4682 -1.6032 32 1 1.9784 -3.8952 -0.6779 33 1 2.4737 -5.8832 -2.0439 34 1 4.3758 -5.8598 -3.6075 35 1 5.7768 -3.8452 -3.8121 36 1 5.2762 -1.8544 -2.4522 37 1 4.4489 -3.1515 1.2504 38 1 4.7031 -1.4103 1.5189 39 1 3.0274 -1.4475 3.3462 40 1 2.7731 -3.1886 3.0777 41 1 5.1593 -3.6168 3.6002 42 1 5.4129 -1.8756 3.8685 43 1 4.5963 -3.5291 9.4648 44 1 2.7178 -0.1215 1.8104 45 1 1.2356 -1.1185 1.8346 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285648319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:57 Heat of formation + Delta-G solvation = -8.579775 kcal Electronic energy + Delta-G solvation = -22176.297474 eV Core-core repulsion = 19089.984718 eV Total energy + Delta-G solvation = -3086.312756 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.00812 -39.24501 -35.93231 -34.61988 -33.65003 -32.13967 -31.66950 -29.28465 -27.90288 -27.40019 -25.73250 -23.90870 -23.29272 -22.39748 -21.13768 -20.53961 -19.52556 -17.80575 -17.43081 -16.90891 -16.65063 -16.18144 -16.05288 -15.69507 -15.32676 -15.01375 -14.53011 -14.51536 -14.15163 -14.10536 -13.98276 -13.78835 -13.50766 -13.34584 -13.08773 -12.95087 -12.82953 -12.73615 -12.46305 -12.28948 -12.01812 -11.90153 -11.74099 -11.60065 -11.58684 -11.44665 -11.36205 -11.14772 -10.34948 -9.73933 -9.52804 -9.40317 -8.68587 -8.38554 -6.15307 0.49522 0.59044 1.29918 1.39782 1.46414 1.71863 2.26915 2.83586 2.95475 3.02976 3.30543 3.61559 3.73346 3.90406 3.99464 4.07130 4.09497 4.21346 4.23064 4.30574 4.34958 4.38787 4.42645 4.51617 4.65451 4.68516 4.72946 4.74942 4.78458 4.80731 4.92241 4.95785 5.09099 5.15212 5.19481 5.22120 5.24225 5.25334 5.29097 5.37661 5.46516 5.63569 5.70532 5.71044 5.99608 6.10901 6.16367 6.20336 7.03279 8.70728 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.015107 B = 0.003013 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.999848 B = 9290.921102 C =10581.812911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.099 4.099 3 H 0.083 0.917 4 C -0.101 4.101 5 C 0.102 3.898 6 H 0.061 0.939 7 C -0.080 4.080 8 C -0.103 4.103 9 C -0.136 4.136 10 C -0.130 4.130 11 C -0.129 4.129 12 C -0.127 4.127 13 N -0.512 5.512 14 C 0.067 3.933 15 C -0.082 4.082 16 C -0.087 4.087 17 S -0.193 6.193 18 C -0.541 4.541 19 H 0.071 0.929 20 C 0.016 3.984 21 N -0.907 5.907 22 Si 0.994 3.006 23 H -0.264 1.264 24 H -0.273 1.273 25 H -0.265 1.265 26 C 0.035 3.965 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.131 0.869 37 H 0.068 0.932 38 H 0.036 0.964 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.272 0.728 44 H 0.041 0.959 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.817 4.164 -25.610 26.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.118 4.118 3 H 0.102 0.898 4 C -0.138 4.138 5 C -0.006 4.006 6 H 0.079 0.921 7 C -0.081 4.081 8 C -0.121 4.121 9 C -0.154 4.154 10 C -0.148 4.148 11 C -0.147 4.147 12 C -0.146 4.146 13 N -0.236 5.236 14 C -0.063 4.063 15 C -0.121 4.121 16 C -0.237 4.237 17 S 0.035 5.965 18 C -0.689 4.689 19 H 0.090 0.910 20 C -0.189 4.189 21 N -0.543 5.543 22 Si 0.815 3.185 23 H -0.189 1.189 24 H -0.198 1.198 25 H -0.189 1.189 26 C -0.093 4.093 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.139 0.861 33 H 0.149 0.851 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.149 0.851 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.276 3.770 -24.980 25.808 hybrid contribution 2.558 0.224 0.597 2.636 sum -2.718 3.993 -24.383 24.857 Atomic orbital electron populations 1.21781 0.93509 1.01944 1.02252 1.22007 0.97171 0.99091 0.93517 0.89842 1.22585 0.95765 0.98329 0.97171 1.21697 0.97728 0.92959 0.88192 0.92135 1.19724 0.95919 0.95260 0.97189 1.21104 0.99828 0.92852 0.98338 1.21438 0.98444 0.98704 0.96775 1.21440 0.95422 0.98980 0.98998 1.21376 1.00253 0.93196 0.99878 1.21235 0.97105 0.99351 0.96859 1.64684 1.20553 1.36780 1.01599 1.22090 0.92031 1.00618 0.91514 1.21194 0.95979 1.02209 0.92682 1.23142 1.01159 1.02510 0.96851 1.84600 1.17332 1.93017 1.01532 1.23011 0.93662 1.56200 0.96030 0.91038 1.26070 1.01689 0.94138 0.96999 1.70145 1.28996 1.47283 1.07919 0.85072 0.77120 0.79226 0.77042 1.18880 1.19815 1.18946 1.23018 0.97832 0.91001 0.97420 0.92883 0.92421 0.91464 0.89515 0.90733 0.86094 0.85087 0.84419 0.84244 0.85144 0.91305 0.94531 0.91559 0.91704 0.92238 0.92146 0.91899 0.94042 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.89 71.98 0.64 -1.44 16 2 C -0.10 -1.67 3.58 -9.91 -0.04 -1.71 16 3 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 4 C -0.10 -1.67 6.02 31.80 0.19 -1.48 16 5 C 0.10 2.08 2.49 44.52 0.11 2.19 16 6 H 0.06 1.22 7.76 -2.39 -0.02 1.21 16 7 C -0.08 -1.70 4.90 -19.86 -0.10 -1.80 16 8 C -0.10 -2.29 9.24 22.27 0.21 -2.09 16 9 C -0.14 -2.68 10.05 22.27 0.22 -2.46 16 10 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 11 C -0.13 -2.22 10.05 22.27 0.22 -2.00 16 12 C -0.13 -2.40 9.69 22.27 0.22 -2.18 16 13 N -0.51 -12.38 4.33 -862.57 -3.73 -16.12 16 14 C 0.07 1.88 4.85 86.30 0.42 2.30 16 15 C -0.08 -2.77 4.96 30.59 0.15 -2.62 16 16 C -0.09 -3.65 5.67 71.98 0.41 -3.24 16 17 S -0.19 -10.56 21.44 -56.49 -1.21 -11.77 16 18 C -0.54 -31.95 9.50 67.95 0.65 -31.30 16 19 H 0.07 4.07 7.80 -2.91 -0.02 4.04 16 20 C 0.02 0.93 5.49 84.86 0.47 1.39 16 21 N -0.91 -55.49 13.22 21.65 0.29 -55.20 16 22 Si 0.99 44.46 29.55 68.60 2.03 46.49 16 23 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 26 C 0.03 0.78 4.99 86.45 0.43 1.21 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.83 8.14 -2.38 -0.02 0.82 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.31 7.67 -2.38 -0.02 1.29 16 32 H 0.12 2.87 7.69 -2.91 -0.02 2.84 16 33 H 0.13 2.16 8.06 -2.91 -0.02 2.13 16 34 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 35 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 36 H 0.13 2.01 8.05 -2.91 -0.02 1.99 16 37 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.04 1.00 7.89 -2.39 -0.02 0.98 16 39 H 0.07 2.24 6.63 -2.38 -0.02 2.23 16 40 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 44 H 0.04 0.99 7.14 -2.39 -0.02 0.97 16 45 H 0.08 1.82 7.69 -2.39 -0.02 1.80 16 Total: -1.00 -67.14 374.36 2.72 -64.42 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.93 Total: 19.46 kcal Atomic # 6 Polarization: -51.71 SS G_CDS: 4.42 Total: -47.28 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -3.45 Total: -71.32 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: -10.56 SS G_CDS: -1.21 Total: -11.77 kcal Total: -67.14 2.72 -64.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285648319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.842 kcal (2) G-P(sol) polarization free energy of solvation -67.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds