Wall clock time and date at job start Tue Mar 31 2020 09:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.78743 * 2 1 4 4 C 1.54602 * 110.72354 * 236.75475 * 2 1 3 5 5 C 1.53991 * 105.14058 * 219.68303 * 4 2 1 6 6 H 1.09003 * 109.91621 * 118.13163 * 5 4 2 7 7 C 1.50703 * 109.91931 * 239.42184 * 5 4 2 8 8 C 1.38235 * 119.99521 * 77.31909 * 7 5 4 9 9 C 1.38234 * 119.99673 * 179.76616 * 8 7 5 10 10 C 1.38239 * 119.99870 * 0.50475 * 9 8 7 11 11 C 1.38236 * 120.00275 * 359.74761 * 10 9 8 12 12 C 1.38225 * 120.00055 * 257.58948 * 7 5 4 13 13 N 1.47907 * 107.05910 * 358.77862 * 5 4 2 14 14 C 1.46899 * 111.00162 * 145.84159 * 13 5 4 15 15 C 1.53001 * 109.47018 * 57.86148 * 14 13 5 16 16 C 1.53001 * 109.47127 * 174.52723 * 15 14 13 17 17 S 1.80999 * 109.47300 * 180.02562 * 16 15 14 18 18 C 1.76196 * 100.00080 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99893 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00029 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00032 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00102 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46963 * 59.99979 * 22 20 18 24 24 H 1.48498 * 109.47184 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47174 * 300.00205 * 22 20 18 26 26 C 1.48534 * 105.81683 * 25.32765 * 13 5 4 27 27 H 1.08997 * 109.47101 * 298.20156 * 1 2 3 28 28 H 1.09007 * 109.47029 * 58.20212 * 1 2 3 29 29 H 1.08998 * 109.47203 * 178.19581 * 1 2 3 30 30 H 1.08993 * 110.30932 * 338.60064 * 4 2 1 31 31 H 1.09008 * 110.30753 * 100.66980 * 4 2 1 32 32 H 1.08000 * 120.00480 * 0.02562 * 8 7 5 33 33 H 1.08003 * 120.00267 * 180.22811 * 9 8 7 34 34 H 1.08002 * 120.00008 * 179.72209 * 10 9 8 35 35 H 1.07989 * 120.00412 * 179.97438 * 11 10 9 36 36 H 1.08003 * 120.00381 * 0.02562 * 12 7 5 37 37 H 1.08996 * 109.46894 * 177.85690 * 14 13 5 38 38 H 1.09002 * 109.46868 * 297.86276 * 14 13 5 39 39 H 1.09006 * 109.46696 * 294.52381 * 15 14 13 40 40 H 1.08999 * 109.47428 * 54.52271 * 15 14 13 41 41 H 1.09005 * 109.46538 * 300.00004 * 16 15 14 42 42 H 1.08999 * 109.47335 * 59.99491 * 16 15 14 43 43 H 0.97004 * 120.00322 * 179.97438 * 21 20 18 44 44 H 1.08994 * 110.66948 * 79.22963 * 26 13 5 45 45 H 1.09003 * 110.66247 * 202.36244 * 26 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0770 -0.7927 -1.2093 5 6 3.2893 -1.5708 -0.6650 6 1 3.1161 -2.6427 -0.7611 7 6 4.5327 -1.1784 -1.4207 8 6 5.1618 0.0203 -1.1412 9 6 6.3051 0.3781 -1.8309 10 6 6.8133 -0.4580 -2.8075 11 6 6.1812 -1.6543 -3.0907 12 6 5.0408 -2.0144 -2.3972 13 7 3.4318 -1.2093 0.7621 14 6 3.9212 -2.3500 1.5478 15 6 5.2613 -2.8225 0.9807 16 6 5.8368 -3.9194 1.8787 17 16 7.4226 -4.4779 1.2082 18 6 7.8458 -5.7020 2.4028 19 1 7.1832 -5.8984 3.2328 20 6 9.0307 -6.4138 2.2772 21 7 9.8380 -6.1748 1.2654 22 14 9.4798 -7.7111 3.5440 23 1 8.4309 -8.7620 3.5696 24 1 10.7843 -8.3231 3.1849 25 1 9.5808 -7.0800 4.8844 26 6 2.0782 -0.7947 1.2118 27 1 -0.3633 0.4856 0.9056 28 1 -0.3633 0.5415 -0.8735 29 1 -0.3633 -1.0271 -0.0324 30 1 1.3208 -1.4832 -1.5824 31 1 2.3880 -0.1098 -2.0000 32 1 4.7626 0.6754 -0.3810 33 1 6.7988 1.3130 -1.6100 34 1 7.7040 -0.1764 -3.3495 35 1 6.5779 -2.3073 -3.8538 36 1 4.5466 -2.9488 -2.6189 37 1 4.0530 -2.0459 2.5862 38 1 3.1977 -3.1636 1.4964 39 1 5.1116 -3.2170 -0.0244 40 1 5.9557 -1.9831 0.9418 41 1 5.9864 -3.5248 2.8837 42 1 5.1425 -4.7587 1.9175 43 1 10.6663 -6.6721 1.1777 44 1 1.4560 -1.6665 1.4134 45 1 2.1444 -0.1559 2.0925 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285648332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:05 Heat of formation + Delta-G solvation = -6.996751 kcal Electronic energy + Delta-G solvation = -22707.199953 eV Core-core repulsion = 19620.955842 eV Total energy + Delta-G solvation = -3086.244110 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.09891 -39.08456 -35.94681 -34.60846 -33.28768 -32.48785 -31.63147 -29.21858 -27.99972 -27.37621 -25.43473 -23.78962 -23.31736 -22.42769 -21.26759 -20.48367 -19.52752 -17.95835 -16.99819 -16.90077 -16.73591 -16.13236 -15.97625 -15.87714 -15.47732 -15.00038 -14.49749 -14.40122 -14.11397 -14.09308 -13.91475 -13.63416 -13.46770 -13.32455 -13.11111 -12.92674 -12.91366 -12.61796 -12.31375 -12.27738 -12.20906 -11.87478 -11.80861 -11.65028 -11.46805 -11.42152 -11.24680 -11.13956 -10.31083 -9.68588 -9.43948 -9.40949 -8.66430 -8.37232 -6.13594 0.56351 0.64399 1.30061 1.39768 1.46518 1.73964 2.28126 2.85862 2.96500 3.08380 3.32822 3.62795 3.76453 3.91388 3.98808 4.07066 4.13864 4.24197 4.27168 4.33443 4.38753 4.41114 4.47182 4.57183 4.70044 4.70719 4.72623 4.78421 4.82864 4.85029 4.86967 4.99214 5.02043 5.15411 5.20837 5.25900 5.29210 5.30685 5.33290 5.38411 5.47593 5.68601 5.73149 5.74542 6.02078 6.12406 6.17309 6.25361 7.04338 8.71914 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016079 B = 0.003641 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.011869 B = 7688.021344 C = 9009.157701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 H 0.083 0.917 4 C -0.113 4.113 5 C 0.104 3.896 6 H 0.051 0.949 7 C -0.069 4.069 8 C -0.098 4.098 9 C -0.133 4.133 10 C -0.135 4.135 11 C -0.132 4.132 12 C -0.133 4.133 13 N -0.515 5.515 14 C 0.063 3.937 15 C -0.076 4.076 16 C -0.088 4.088 17 S -0.193 6.193 18 C -0.541 4.541 19 H 0.072 0.928 20 C 0.016 3.984 21 N -0.907 5.907 22 Si 0.993 3.007 23 H -0.264 1.264 24 H -0.274 1.274 25 H -0.264 1.264 26 C 0.037 3.963 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.129 0.871 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.119 0.881 37 H 0.081 0.919 38 H 0.039 0.961 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.271 0.729 44 H 0.049 0.951 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.870 13.935 -5.156 23.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 H 0.102 0.898 4 C -0.151 4.151 5 C -0.004 4.004 6 H 0.069 0.931 7 C -0.069 4.069 8 C -0.116 4.116 9 C -0.151 4.151 10 C -0.153 4.153 11 C -0.150 4.150 12 C -0.151 4.151 13 N -0.239 5.239 14 C -0.067 4.067 15 C -0.114 4.114 16 C -0.238 4.238 17 S 0.036 5.964 18 C -0.689 4.689 19 H 0.090 0.910 20 C -0.189 4.189 21 N -0.544 5.544 22 Si 0.815 3.185 23 H -0.189 1.189 24 H -0.199 1.199 25 H -0.189 1.189 26 C -0.090 4.090 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.147 0.853 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.137 0.863 37 H 0.100 0.900 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.758 14.635 -6.089 23.067 hybrid contribution -0.306 -2.128 1.520 2.633 sum -17.064 12.507 -4.569 21.644 Atomic orbital electron populations 1.21741 0.93109 1.02120 1.02619 1.22039 0.96319 0.99329 0.92981 0.89837 1.22528 0.95254 0.98916 0.98402 1.21270 0.92881 0.97900 0.88363 0.93126 1.19748 0.96647 0.94713 0.95805 1.21034 0.95368 0.96535 0.98699 1.21425 0.96712 1.00517 0.96457 1.21377 1.00330 0.94859 0.98742 1.21302 0.95929 0.97241 1.00545 1.21161 0.97184 0.99528 0.97239 1.64641 1.24460 1.33321 1.01449 1.22167 0.94693 0.91674 0.98179 1.21143 0.96385 0.96055 0.97852 1.23166 0.98348 1.00575 1.01673 1.84713 1.22886 1.49001 1.39806 1.23023 1.09593 1.23841 1.12399 0.91023 1.26069 0.94963 0.99462 0.98425 1.70155 1.11798 1.41549 1.30868 0.85078 0.77817 0.77623 0.77973 1.18887 1.19895 1.18901 1.23390 0.87740 0.98965 0.98880 0.91641 0.91724 0.92649 0.90310 0.90885 0.85286 0.84716 0.84960 0.85494 0.86291 0.90037 0.94244 0.92328 0.92452 0.92028 0.92162 0.91973 0.93234 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.16 71.98 0.66 -0.89 16 2 C -0.09 -1.31 3.66 -9.59 -0.04 -1.34 16 3 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.11 -1.99 6.12 31.47 0.19 -1.79 16 5 C 0.10 2.42 2.09 44.31 0.09 2.51 16 6 H 0.05 1.28 7.30 -2.39 -0.02 1.26 16 7 C -0.07 -1.81 3.12 -19.87 -0.06 -1.87 16 8 C -0.10 -2.56 9.32 22.27 0.21 -2.35 16 9 C -0.13 -3.38 10.05 22.27 0.22 -3.16 16 10 C -0.14 -3.53 10.05 22.27 0.22 -3.31 16 11 C -0.13 -3.65 10.05 22.27 0.22 -3.43 16 12 C -0.13 -3.70 9.02 22.27 0.20 -3.50 16 13 N -0.52 -12.06 4.30 -862.42 -3.71 -15.77 16 14 C 0.06 1.69 4.83 86.30 0.42 2.11 16 15 C -0.08 -2.64 4.18 30.59 0.13 -2.51 16 16 C -0.09 -3.73 5.67 71.98 0.41 -3.32 16 17 S -0.19 -10.66 21.44 -56.49 -1.21 -11.87 16 18 C -0.54 -32.06 9.50 67.95 0.65 -31.42 16 19 H 0.07 4.08 7.80 -2.91 -0.02 4.06 16 20 C 0.02 0.91 5.49 84.86 0.47 1.38 16 21 N -0.91 -55.90 13.22 21.65 0.29 -55.61 16 22 Si 0.99 44.66 29.55 68.60 2.03 46.68 16 23 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 25 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 26 C 0.04 0.66 6.00 86.65 0.52 1.18 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.05 0.63 8.10 -2.39 -0.02 0.61 16 30 H 0.08 1.23 7.82 -2.39 -0.02 1.21 16 31 H 0.07 1.32 7.68 -2.38 -0.02 1.30 16 32 H 0.13 3.16 7.74 -2.91 -0.02 3.14 16 33 H 0.13 2.80 8.06 -2.91 -0.02 2.78 16 34 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 35 H 0.13 3.14 8.06 -2.92 -0.02 3.11 16 36 H 0.12 3.11 8.04 -2.91 -0.02 3.09 16 37 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.04 1.02 8.00 -2.39 -0.02 1.00 16 39 H 0.06 2.14 5.95 -2.38 -0.01 2.12 16 40 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 42 H 0.06 2.49 8.14 -2.40 -0.02 2.47 16 43 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 44 H 0.05 0.85 7.84 -2.39 -0.02 0.84 16 45 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -68.19 372.04 2.84 -65.35 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.93 Total: 22.92 kcal Atomic # 6 Polarization: -56.23 SS G_CDS: 4.51 Total: -51.71 kcal Atomic # 7 Polarization: -67.96 SS G_CDS: -3.42 Total: -71.38 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: -10.66 SS G_CDS: -1.21 Total: -11.87 kcal Total: -68.19 2.84 -65.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285648332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.357 kcal (2) G-P(sol) polarization free energy of solvation -68.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds