Wall clock time and date at job start Tue Mar 31 2020 08:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47205 * 2 1 4 4 C 1.53003 * 109.47391 * 239.99807 * 2 1 3 5 5 N 1.46504 * 109.47062 * 119.99680 * 2 1 3 6 6 C 1.34584 * 125.74544 * 75.00110 * 5 2 1 7 7 N 1.30871 * 107.62397 * 179.97438 * 6 5 2 8 8 C 1.34548 * 107.26978 * 359.97438 * 7 6 5 9 9 C 1.47871 * 126.04956 * 180.26421 * 8 7 6 10 10 O 1.21556 * 120.00041 * 173.59507 * 9 8 7 11 11 N 1.34773 * 119.99842 * 353.59552 * 9 8 7 12 12 C 1.46492 * 120.00289 * 4.26542 * 11 9 8 13 13 C 1.50703 * 109.47225 * 83.49184 * 12 11 9 14 14 H 1.08006 * 119.99635 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00207 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99764 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99860 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46996 * 90.00155 * 17 15 13 19 19 H 1.48502 * 109.46609 * 209.99998 * 17 15 13 20 20 H 1.48500 * 109.47147 * 329.99812 * 17 15 13 21 21 C 1.46505 * 119.99712 * 184.26974 * 11 9 8 22 22 C 1.52996 * 109.47134 * 94.90458 * 21 11 9 23 23 C 1.47198 * 109.47150 * 179.97438 * 22 21 11 24 24 N 9.02499 * 131.63104 * 142.86139 * 5 1 2 25 25 N 1.28845 * 125.74813 * 254.97689 * 5 2 1 26 26 H 1.08996 * 109.47052 * 300.00513 * 1 2 3 27 27 H 1.09003 * 109.46878 * 60.00254 * 1 2 3 28 28 H 1.09003 * 109.46983 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47234 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46995 * 299.99674 * 3 2 1 31 31 H 1.08996 * 109.47534 * 59.99783 * 3 2 1 32 32 H 1.09005 * 109.46683 * 300.00288 * 4 2 1 33 33 H 1.08994 * 109.46943 * 59.99550 * 4 2 1 34 34 H 1.08997 * 109.47587 * 180.02562 * 4 2 1 35 35 H 1.08000 * 126.19086 * 359.97438 * 6 5 2 36 36 H 1.08999 * 109.47206 * 203.49327 * 12 11 9 37 37 H 1.08998 * 109.47304 * 323.49287 * 12 11 9 38 38 H 0.96998 * 119.99573 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.46798 * 214.90571 * 21 11 9 40 40 H 1.08998 * 109.46847 * 334.90416 * 21 11 9 41 41 H 1.08999 * 109.47370 * 299.99762 * 22 21 11 42 42 H 1.09002 * 109.47754 * 60.00104 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0139 -2.0220 1.3923 7 7 2.5283 -2.2503 2.5738 8 6 2.8507 -1.0575 3.1063 9 6 3.4673 -0.8342 4.4317 10 8 3.8200 0.2825 4.7576 11 7 3.6382 -1.8688 5.2782 12 6 3.2999 -3.2286 4.8509 13 6 4.4543 -3.8146 4.0796 14 1 5.3502 -3.2322 3.9229 15 6 4.3663 -5.0939 3.5729 16 7 5.3736 -5.6050 2.8993 17 14 2.8164 -6.1010 3.8432 18 1 1.8684 -5.8600 2.7258 19 1 3.1659 -7.5434 3.8935 20 1 2.1829 -5.7001 5.1251 21 6 4.1623 -1.6336 6.6260 22 6 2.9980 -1.4931 7.6086 23 6 3.5246 -1.2574 8.9628 24 7 3.9291 -1.0750 10.0083 25 7 2.5248 -0.1255 2.2376 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 -1.7490 -1.2492 33 1 1.6767 -0.2076 -2.1392 34 1 3.1300 -0.7217 -1.2490 35 1 1.6514 -2.7674 0.6999 36 1 3.0979 -3.8450 5.7269 37 1 2.4151 -3.2000 4.2149 38 1 5.3118 -6.5052 2.5432 39 1 4.7896 -2.4738 6.9236 40 1 4.7543 -0.7184 6.6309 41 1 2.3707 -0.6529 7.3110 42 1 2.4059 -2.4083 7.6037 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291511251.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:11 Heat of formation + Delta-G solvation = 98.635699 kcal Electronic energy + Delta-G solvation = -25443.193005 eV Core-core repulsion = 21847.528998 eV Total energy + Delta-G solvation = -3595.664007 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.04668 -39.17006 -37.25682 -36.65868 -35.29562 -32.73529 -32.19166 -31.25623 -30.35934 -27.77689 -27.74263 -27.60117 -25.26795 -22.93058 -22.73744 -22.01255 -19.84692 -18.90688 -17.59453 -16.95887 -16.75134 -16.27502 -16.09633 -15.75412 -14.71618 -14.62739 -14.38912 -14.28898 -14.08443 -13.82359 -13.41071 -13.03523 -12.89824 -12.63418 -12.59224 -12.51777 -12.32416 -12.23991 -12.06050 -12.00958 -11.72751 -11.52074 -11.47620 -11.04389 -10.94149 -10.67585 -10.56105 -10.19105 -9.86965 -9.69110 -9.43171 -9.29995 -9.06709 -8.48280 -7.85077 -6.00868 -3.96791 1.87615 2.40943 2.66551 2.86140 2.92862 3.31445 3.36998 3.38436 3.52050 3.97386 4.18353 4.31694 4.43920 4.45758 4.53960 4.66757 4.99510 5.10543 5.15991 5.24553 5.29231 5.32668 5.33801 5.34540 5.45262 5.48574 5.53905 5.62665 5.69007 5.86805 5.98418 6.04822 6.22599 6.45395 6.50495 6.78273 6.88705 7.14691 7.40666 7.67011 7.68645 7.99704 8.44378 8.58732 8.83135 9.02897 9.60502 11.12921 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.010780 B = 0.005616 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.688984 B = 4984.333194 C = 6895.343160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.169 3.831 3 C -0.146 4.146 4 C -0.160 4.160 5 N -0.300 5.300 6 C 0.171 3.829 7 N -0.424 5.424 8 C 0.151 3.849 9 C 0.620 3.380 10 O -0.548 6.548 11 N -0.573 5.573 12 C 0.194 3.806 13 C -0.506 4.506 14 H 0.070 0.930 15 C 0.079 3.921 16 N -0.903 5.903 17 Si 0.875 3.125 18 H -0.274 1.274 19 H -0.292 1.292 20 H -0.267 1.267 21 C 0.125 3.875 22 C -0.046 4.046 23 C 0.221 3.779 24 N -0.447 5.447 25 N -0.262 5.262 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.213 0.787 36 H 0.028 0.972 37 H 0.072 0.928 38 H 0.261 0.739 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.519 8.348 -8.208 17.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.086 3.914 3 C -0.204 4.204 4 C -0.219 4.219 5 N -0.097 5.097 6 C -0.124 4.124 7 N -0.147 5.147 8 C -0.128 4.128 9 C 0.404 3.596 10 O -0.424 6.424 11 N -0.303 5.303 12 C 0.074 3.926 13 C -0.545 4.545 14 H 0.088 0.912 15 C -0.122 4.122 16 N -0.542 5.542 17 Si 0.703 3.297 18 H -0.200 1.200 19 H -0.219 1.219 20 H -0.192 1.192 21 C -0.001 4.001 22 C -0.088 4.088 23 C -0.097 4.097 24 N -0.125 5.125 25 N -0.100 5.100 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.229 0.771 36 H 0.046 0.954 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.127 0.873 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.512 9.383 -6.270 16.121 hybrid contribution -0.952 -1.171 -0.892 1.753 sum -12.464 8.212 -7.162 16.556 Atomic orbital electron populations 1.22240 0.92229 1.03495 1.03647 1.21011 0.94946 0.94146 0.81279 1.21966 1.02640 0.92524 1.03272 1.22249 1.02904 1.01180 0.95527 1.47737 1.42372 1.06349 1.13279 1.26576 1.02740 0.85849 0.97270 1.71907 1.13004 1.24144 1.05646 1.23536 1.05893 0.85639 0.97759 1.16293 0.78069 0.84070 0.81118 1.90738 1.51792 1.23672 1.76203 1.47649 1.62079 1.09053 1.11559 1.20410 0.99409 0.76814 0.95996 1.21129 1.00679 0.99445 1.33226 0.91175 1.24701 0.95676 0.97327 0.94520 1.69910 1.31130 1.16179 1.37029 0.86887 0.84363 0.79221 0.79259 1.19962 1.21859 1.19209 1.21219 0.93951 1.04284 0.80610 1.19782 1.00074 1.05414 0.83494 1.29023 0.93342 0.92687 0.94637 1.81175 1.09027 1.09640 1.12647 1.74182 1.14487 1.25622 0.95727 0.91400 0.90041 0.91387 0.91293 0.90804 0.90677 0.91100 0.89788 0.91056 0.77090 0.95374 0.91048 0.92897 0.88864 0.89175 0.87270 0.86944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 8.72 37.16 0.32 -0.85 16 2 C 0.17 1.64 1.23 -131.82 -0.16 1.48 16 3 C -0.15 -1.39 8.04 37.16 0.30 -1.09 16 4 C -0.16 -1.24 8.28 37.16 0.31 -0.93 16 5 N -0.30 -4.34 3.17 -49.83 -0.16 -4.50 16 6 C 0.17 2.66 11.71 -90.48 -1.06 1.60 16 7 N -0.42 -8.45 7.18 -12.36 -0.09 -8.54 16 8 C 0.15 3.08 7.63 -156.35 -1.19 1.89 16 9 C 0.62 13.03 7.62 -12.32 -0.09 12.94 16 10 O -0.55 -12.19 16.57 5.32 0.09 -12.10 16 11 N -0.57 -11.22 2.47 -176.17 -0.44 -11.66 16 12 C 0.19 4.18 3.85 -5.20 -0.02 4.16 16 13 C -0.51 -13.25 8.96 -34.44 -0.31 -13.56 16 14 H 0.07 2.11 8.06 -52.48 -0.42 1.68 16 15 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 16 N -0.90 -26.44 13.96 55.43 0.77 -25.66 16 17 Si 0.87 20.02 27.47 -169.99 -4.67 15.35 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -5.72 6.54 56.52 0.37 -5.35 16 21 C 0.12 1.99 5.42 -4.04 -0.02 1.97 16 22 C -0.05 -0.58 6.02 -29.52 -0.18 -0.76 16 23 C 0.22 3.10 15.43 -20.77 -0.32 2.78 16 24 N -0.45 -7.35 18.54 42.14 0.78 -6.57 16 25 N -0.26 -4.77 11.10 32.07 0.36 -4.41 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.81 8.02 -51.93 -0.42 0.40 16 32 H 0.07 0.50 7.34 -51.93 -0.38 0.11 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.21 2.46 7.53 -52.49 -0.40 2.07 16 36 H 0.03 0.58 7.08 -51.93 -0.37 0.21 16 37 H 0.07 1.56 4.72 -51.93 -0.25 1.31 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.09 1.47 8.11 -51.93 -0.42 1.05 16 40 H 0.09 1.48 7.23 -51.93 -0.38 1.10 16 41 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 359.28 15.07 5.41 5.41 Total: -1.00 -34.66 359.28 -6.46 -41.12 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -6.00 Total: -0.13 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: -2.52 Total: 11.68 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: 1.23 Total: -61.33 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.67 Total: 15.35 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.66 -6.46 -41.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291511251.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.756 kcal (2) G-P(sol) polarization free energy of solvation -34.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds